RNA–Protein interactions for RNA: ENST00000524356.1

PCM1-223, Transcript of pericentriolar material 1, human

TSL 2

Gene PCM1, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PCM1-223	ENST00000524356	NYAP1	Q6ZVC0	841 aa		12.65	□□□□□ -0.38
PCM1-223	ENST00000524356	ZFR	Q96KR1	1074 aa	Known RBP	12.64	□□□□□ -0.39
PCM1-223	ENST00000524356	MAP3K9	P80192	1104 aa		12.63	□□□□□ -0.39
PCM1-223	ENST00000524356	EMILIN3	Q9NT22	766 aa		12.62	□□□□□ -0.39
PCM1-223	ENST00000524356	KIAA1468	Q9P260	1216 aa		12.62	□□□□□ -0.39
PCM1-223	ENST00000524356	LARP6	Q9BRS8	491 aa	Known RBP	12.61	□□□□□ -0.39
PCM1-223	ENST00000524356	RYDEN	Q9NUL5	291 aa	Known RBP	12.6	□□□□□ -0.39
PCM1-223	ENST00000524356	DDX27	Q96GQ7	796 aa	Known RBP	12.59	□□□□□ -0.39
PCM1-223	ENST00000524356	SEPT9	Q9UHD8	586 aa	Predicted RBP	12.59	□□□□□ -0.39
PCM1-223	ENST00000524356	LAPTM4A	Q15012	233 aa		12.58	□□□□□ -0.4
PCM1-223	ENST00000524356	TYW1B	Q6NUM6	668 aa		12.57	□□□□□ -0.4
PCM1-223	ENST00000524356	FBXW7	Q969H0	707 aa		12.57	□□□□□ -0.4
PCM1-223	ENST00000524356	MFSD10	Q14728	455 aa		12.56	□□□□□ -0.4
PCM1-223	ENST00000524356	TRAF7	Q6Q0C0	670 aa		12.56	□□□□□ -0.4
PCM1-223	ENST00000524356	PHF14	O94880	888 aa		12.55	□□□□□ -0.4
PCM1-223	ENST00000524356	GFRA3	O60609	400 aa		12.54	□□□□□ -0.4
PCM1-223	ENST00000524356	ONECUT3	O60422	494 aa	Predicted RBP	12.53	□□□□□ -0.4
PCM1-223	ENST00000524356	TSR3	Q9UJK0	312 aa	Known RBP	12.51	□□□□□ -0.41
PCM1-223	ENST00000524356	HPS5	Q9UPZ3	1129 aa		12.51	□□□□□ -0.41
PCM1-223	ENST00000524356	FAM98C	Q17RN3	349 aa	Known RBP	12.5	□□□□□ -0.41
PCM1-223	ENST00000524356	C6orf132	Q5T0Z8	1188 aa		12.5	□□□□□ -0.41
PCM1-223	ENST00000524356	TRIM6-TRIM34	B2RNG4	842 aa		12.49	□□□□□ -0.41
PCM1-223	ENST00000524356	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	12.49	□□□□□ -0.41
PCM1-223	ENST00000524356	LRCH3	Q96II8	777 aa		12.47	□□□□□ -0.41
PCM1-223	ENST00000524356	GTPBP6	O43824	516 aa	Predicted RBP	12.46	□□□□□ -0.41
PCM1-223	ENST00000524356	NRG2	O14511	850 aa	Predicted RBP	12.43	□□□□□ -0.42
PCM1-223	ENST00000524356	PRKD2	Q9BZL6	878 aa		12.43	□□□□□ -0.42
PCM1-223	ENST00000524356	TJAP1	Q5JTD0	557 aa		12.42	□□□□□ -0.42
PCM1-223	ENST00000524356	EPAS1	Q99814	870 aa		12.42	□□□□□ -0.42
PCM1-223	ENST00000524356	RBM33	Q96EV2	1170 aa	Known RBP	12.39	□□□□□ -0.43
PCM1-223	ENST00000524356	TSKS	Q9UJT2	592 aa		12.37	□□□□□ -0.43
PCM1-223	ENST00000524356	PPP4C	P60510	307 aa		12.36	□□□□□ -0.43
PCM1-223	ENST00000524356	CADPS2	Q86UW7	1296 aa		12.36	□□□□□ -0.43
PCM1-223	ENST00000524356	PPP1R18	Q6NYC8	613 aa		12.35	□□□□□ -0.43
PCM1-223	ENST00000524356	DPYSL4	O14531	572 aa		12.34	□□□□□ -0.43
PCM1-223	ENST00000524356		V9GY48	417 aa	Predicted RBP	12.34	□□□□□ -0.43
PCM1-223	ENST00000524356	CAMK2B	Q13554	666 aa		12.33	□□□□□ -0.44
PCM1-223	ENST00000524356	MTR	Q99707	1265 aa		12.33	□□□□□ -0.44
PCM1-223	ENST00000524356	ZNF787	Q6DD87	383 aa		12.31	□□□□□ -0.44
PCM1-223	ENST00000524356	SAMD7	Q7Z3H4	446 aa		12.31	□□□□□ -0.44
PCM1-223	ENST00000524356	DDX12P	Q92771	950 aa		12.31	□□□□□ -0.44
PCM1-223	ENST00000524356	TSR1	Q2NL82	804 aa	Known RBP	12.3	□□□□□ -0.44
PCM1-223	ENST00000524356	PACS2	Q86VP3	889 aa		12.3	□□□□□ -0.44
PCM1-223	ENST00000524356	IL21	Q9HBE4	155 aa		12.29	□□□□□ -0.44
PCM1-223	ENST00000524356	SMAP	O00193	183 aa		12.28	□□□□□ -0.44
PCM1-223	ENST00000524356	ZNF516	Q92618	1163 aa		12.28	□□□□□ -0.44
PCM1-223	ENST00000524356	EN1	Q05925	392 aa	Predicted RBP	12.27	□□□□□ -0.45
PCM1-223	ENST00000524356	ZNF775	Q96BV0	537 aa	Predicted RBP	12.27	□□□□□ -0.45
PCM1-223	ENST00000524356	PDZRN3	Q9UPQ7	1066 aa		12.27	□□□□□ -0.45
PCM1-223	ENST00000524356	C3orf80	F5H4A9	247 aa		12.26	□□□□□ -0.45
PCM1-223	ENST00000524356	EIF4ENIF1	Q9NRA8	985 aa	Known RBP	12.26	□□□□□ -0.45
PCM1-223	ENST00000524356	FAM198A	Q9UFP1	575 aa		12.26	□□□□□ -0.45
PCM1-223	ENST00000524356	MAP3K7	O43318	606 aa		12.23	□□□□□ -0.45
PCM1-223	ENST00000524356	NBR1	Q14596	966 aa		12.23	□□□□□ -0.45
PCM1-223	ENST00000524356	NKX2-3	Q8TAU0	364 aa		12.22	□□□□□ -0.45
PCM1-223	ENST00000524356	CDCA7L	Q96GN5	454 aa		12.22	□□□□□ -0.45
PCM1-223	ENST00000524356	APLP1	P51693	650 aa		12.19	□□□□□ -0.46
PCM1-223	ENST00000524356	PRSS12	P56730	875 aa		12.18	□□□□□ -0.46
PCM1-223	ENST00000524356	TATDN2	Q93075	761 aa		12.16	□□□□□ -0.46
PCM1-223	ENST00000524356	PRIM1	P49642	420 aa	Known RBP	12.15	□□□□□ -0.46
PCM1-223	ENST00000524356	PDIA6	Q15084	440 aa		12.14	□□□□□ -0.47
PCM1-223	ENST00000524356	TRIM67	Q6ZTA4	783 aa		12.14	□□□□□ -0.47
PCM1-223	ENST00000524356	PNMA3	Q9UL41	463 aa		12.14	□□□□□ -0.47
PCM1-223	ENST00000524356	RNF40	O75150	1001 aa		12.13	□□□□□ -0.47
PCM1-223	ENST00000524356	NBPF26	B4DH59	902 aa		12.12	□□□□□ -0.47
PCM1-223	ENST00000524356	COPS2	P61201	443 aa		12.09	□□□□□ -0.47
PCM1-223	ENST00000524356	GGCX	P38435	758 aa		12.08	□□□□□ -0.48
PCM1-223	ENST00000524356	NUDT18	Q6ZVK8	323 aa		12.08	□□□□□ -0.48
PCM1-223	ENST00000524356	CERK	Q8TCT0	537 aa		12.08	□□□□□ -0.48
PCM1-223	ENST00000524356	EMID1	Q96A84	441 aa	Predicted RBP	12.08	□□□□□ -0.48
PCM1-223	ENST00000524356	POTEC	B2RU33	542 aa		12.07	□□□□□ -0.48
PCM1-223	ENST00000524356	TMUB1	Q9BVT8	246 aa		12.07	□□□□□ -0.48
PCM1-223	ENST00000524356	MYT1	Q01538	1121 aa		12.05	□□□□□ -0.48
PCM1-223	ENST00000524356	CDHR5	Q9HBB8	845 aa		12.04	□□□□□ -0.48
PCM1-223	ENST00000524356	SPDYE16	A6NNV3	312 aa	Predicted RBP	12.02	□□□□□ -0.49
PCM1-223	ENST00000524356	ZPR1	O75312	459 aa		12.02	□□□□□ -0.49
PCM1-223	ENST00000524356	HDGF	P51858	240 aa	Known RBP	12.02	□□□□□ -0.49
PCM1-223	ENST00000524356	PKDCC	Q504Y2	493 aa		12.01	□□□□□ -0.49
PCM1-223	ENST00000524356	SWT1	Q5T5J6	900 aa	Known RBP	12.01	□□□□□ -0.49
PCM1-223	ENST00000524356	RNF223	E7ERA6	249 aa		12	□□□□□ -0.49
PCM1-223	ENST00000524356	SLC19A1	P41440	591 aa		12	□□□□□ -0.49
PCM1-223	ENST00000524356	RBM27	Q9P2N5	1060 aa	Known RBP	12	□□□□□ -0.49
PCM1-223	ENST00000524356	DGAT1	O75907	488 aa		11.98	□□□□□ -0.49
PCM1-223	ENST00000524356	GRXCR2	A6NFK2	248 aa		11.97	□□□□□ -0.49
PCM1-223	ENST00000524356	SLF2	Q8IX21	1173 aa		11.97	□□□□□ -0.49
PCM1-223	ENST00000524356	TTC13	Q8NBP0	860 aa		11.97	□□□□□ -0.49
PCM1-223	ENST00000524356	NECTIN2	Q92692	538 aa		11.97	□□□□□ -0.49
PCM1-223	ENST00000524356	PRR20E	P86478	221 aa		11.96	□□□□□ -0.49
PCM1-223	ENST00000524356	PRR20C	P86479	221 aa		11.96	□□□□□ -0.49
PCM1-223	ENST00000524356	PRR20D	P86480	221 aa		11.96	□□□□□ -0.49
PCM1-223	ENST00000524356	PRR20B	P86481	221 aa		11.96	□□□□□ -0.49
PCM1-223	ENST00000524356	PRR20A	P86496	221 aa		11.96	□□□□□ -0.49
PCM1-223	ENST00000524356	LCE2A	Q5TA79	106 aa	Predicted RBP	11.96	□□□□□ -0.49
PCM1-223	ENST00000524356	SPRYD7	Q5W111	196 aa		11.96	□□□□□ -0.49
PCM1-223	ENST00000524356	OSBP	P22059	807 aa		11.95	□□□□□ -0.5
PCM1-223	ENST00000524356	ZNF598	Q86UK7	904 aa	Known RBP	11.94	□□□□□ -0.5
PCM1-223	ENST00000524356	DCAF8L2	P0C7V8	631 aa		11.93	□□□□□ -0.5
PCM1-223	ENST00000524356	TLL1	O43897	1013 aa		11.92	□□□□□ -0.5
PCM1-223	ENST00000524356	BLOC1S3	Q6QNY0	202 aa		11.92	□□□□□ -0.5
PCM1-223	ENST00000524356	PCDHB3	Q9Y5E6	796 aa		11.92	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 203.4 ms