RNA–Protein interactions for RNA: ENST00000448494.1

LINC00342-202, long intergenic non-protein coding RNA 342, humanhuman

TSL 2 BASIC

Gene LINC00342, Length 2,351 nt, Biotype lincRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00342-202ENST00000448494 OSCARQ8IYS5 282 aa13.64□□□□□ -0.23
LINC00342-202ENST00000448494 NCOA1Q15788 1441 aa13.64□□□□□ -0.23
LINC00342-202ENST00000448494 HSPA5P11021 654 aaKnown RBP13.64□□□□□ -0.23
LINC00342-202ENST00000448494 ARAP1Q96P48 1450 aa13.63□□□□□ -0.23
LINC00342-202ENST00000448494 KDM2BQ8NHM5 1336 aa13.63□□□□□ -0.23
LINC00342-202ENST00000448494 GZF1Q9H116 711 aaPredicted RBP13.63□□□□□ -0.23
LINC00342-202ENST00000448494 MMP14P50281 582 aa13.63□□□□□ -0.23
LINC00342-202ENST00000448494 HS1BP3Q53T59 392 aa13.63□□□□□ -0.23
LINC00342-202ENST00000448494 CENPQQ7L2Z9 268 aaPredicted RBP13.63□□□□□ -0.23
LINC00342-202ENST00000448494 CCDC7Q96M83 1385 aa13.62□□□□□ -0.23
LINC00342-202ENST00000448494 DNAJC2Q99543 621 aaKnown RBP13.62□□□□□ -0.23
LINC00342-202ENST00000448494 MYOM3Q5VTT5 1437 aa13.62□□□□□ -0.23
LINC00342-202ENST00000448494 ZNF500O60304 480 aaPredicted RBP13.61□□□□□ -0.23
LINC00342-202ENST00000448494 CSPP1Q1MSJ5 1256 aa13.61□□□□□ -0.23
LINC00342-202ENST00000448494 KDM5BQ9UGL1 1544 aa13.61□□□□□ -0.23
LINC00342-202ENST00000448494 VIRMAQ69YN4 1812 aaKnown RBP13.61□□□□□ -0.23
LINC00342-202ENST00000448494 SLKQ9H2G2 1235 aaPredicted RBP13.6□□□□□ -0.23
LINC00342-202ENST00000448494 EIF4G2P78344 907 aaKnown RBP eCLIP13.59□□□□□ -0.23
LINC00342-202ENST00000448494 SASS6Q6UVJ0 657 aa13.59□□□□□ -0.23
LINC00342-202ENST00000448494 FANCD2Q9BXW9 1451 aa13.59□□□□□ -0.23
LINC00342-202ENST00000448494 RIMBP3CA6NJZ7 1639 aa13.59□□□□□ -0.23
LINC00342-202ENST00000448494 RIMBP3BA6NNM3 1639 aa13.59□□□□□ -0.23
LINC00342-202ENST00000448494 RIMBP3Q9UFD9 1639 aa13.59□□□□□ -0.23
LINC00342-202ENST00000448494 DDX11L8A8MPP1 907 aa13.59□□□□□ -0.23
LINC00342-202ENST00000448494 CLGNO14967 610 aa13.58□□□□□ -0.24
LINC00342-202ENST00000448494 RAPGEF2Q9Y4G8 1499 aa13.58□□□□□ -0.24
LINC00342-202ENST00000448494 SKAP1Q86WV1 359 aa13.58□□□□□ -0.24
LINC00342-202ENST00000448494 ARID3AQ99856 593 aa13.57□□□□□ -0.24
LINC00342-202ENST00000448494 USP19O94966 1318 aa13.57□□□□□ -0.24
LINC00342-202ENST00000448494 PDE3BQ13370 1112 aa13.57□□□□□ -0.24
LINC00342-202ENST00000448494 CGNQ9P2M7 1197 aaKnown RBP13.57□□□□□ -0.24
LINC00342-202ENST00000448494 IRX5P78411 483 aaPredicted RBP13.56□□□□□ -0.24
LINC00342-202ENST00000448494 CNKSR2Q8WXI2 1034 aa13.56□□□□□ -0.24
LINC00342-202ENST00000448494 TMC1Q8TDI8 760 aa13.54□□□□□ -0.24
LINC00342-202ENST00000448494 HSP90B1P14625 803 aaKnown RBP13.54□□□□□ -0.24
LINC00342-202ENST00000448494 NOL7Q9UMY1 257 aaKnown RBP13.54□□□□□ -0.24
LINC00342-202ENST00000448494 POLR1AO95602 1720 aaPredicted RBP13.54□□□□□ -0.24
LINC00342-202ENST00000448494 MCM5P33992 734 aa13.53□□□□□ -0.24
LINC00342-202ENST00000448494 AXDND1Q5T1B0 1012 aaPredicted RBP13.53□□□□□ -0.24
LINC00342-202ENST00000448494 YY1AP1Q9H869 796 aa13.53□□□□□ -0.24
LINC00342-202ENST00000448494 URB2Q14146 1524 aaKnown RBP13.52□□□□□ -0.24
LINC00342-202ENST00000448494 ZBTB22O15209 634 aa13.52□□□□□ -0.24
LINC00342-202ENST00000448494 CBX1P83916 185 aa13.52□□□□□ -0.24
LINC00342-202ENST00000448494 PNISRQ8TF01 805 aaKnown RBP13.52□□□□□ -0.24
LINC00342-202ENST00000448494 CRBNQ96SW2 442 aa13.52□□□□□ -0.24
LINC00342-202ENST00000448494 CHMP5Q9NZZ3 219 aa13.52□□□□□ -0.25
LINC00342-202ENST00000448494 LRPPRCP42704 1394 aaKnown RBP13.52□□□□□ -0.25
LINC00342-202ENST00000448494 CFTRP13569 1480 aa13.51□□□□□ -0.25
LINC00342-202ENST00000448494 HAP1P54257 671 aaPredicted RBP13.51□□□□□ -0.25
LINC00342-202ENST00000448494 PTMSP20962 102 aa13.51□□□□□ -0.25
LINC00342-202ENST00000448494 SCAPERQ9BY12 1400 aa13.51□□□□□ -0.25
LINC00342-202ENST00000448494 HDAC5Q9UQL6 1122 aa13.51□□□□□ -0.25
LINC00342-202ENST00000448494 NBPF1Q3BBV0 1214 aa13.5□□□□□ -0.25
LINC00342-202ENST00000448494 SKOR2Q2VWA4 1001 aaPredicted RBP13.5□□□□□ -0.25
LINC00342-202ENST00000448494 GAS2L3Q86XJ1 694 aa13.5□□□□□ -0.25
LINC00342-202ENST00000448494 ZNF622Q969S3 477 aaKnown RBP eCLIP13.5□□□□□ -0.25
LINC00342-202ENST00000448494 PSEN1P49768 467 aa13.49□□□□□ -0.25
LINC00342-202ENST00000448494 E9PSI1 815 aa13.49□□□□□ -0.25
LINC00342-202ENST00000448494 NASPP49321 788 aaPredicted RBP13.49□□□□□ -0.25
LINC00342-202ENST00000448494 CNPY4Q8N129 248 aa13.49□□□□□ -0.25
LINC00342-202ENST00000448494 TSPYL1Q9H0U9 437 aa13.49□□□□□ -0.25
LINC00342-202ENST00000448494 ARHGEF11O15085 1522 aa13.48□□□□□ -0.25
LINC00342-202ENST00000448494 NLRP1Q9C000 1473 aa13.48□□□□□ -0.25
LINC00342-202ENST00000448494 MYRIPQ8NFW9 859 aa13.48□□□□□ -0.25
LINC00342-202ENST00000448494 GEMIN8Q9NWZ8 242 aaKnown RBP13.48□□□□□ -0.25
LINC00342-202ENST00000448494 CCDC66A2RUB6 948 aa13.47□□□□□ -0.25
LINC00342-202ENST00000448494 KCNJ4P48050 445 aa13.47□□□□□ -0.25
LINC00342-202ENST00000448494 KCNG1Q9UIX4 513 aa13.47□□□□□ -0.25
LINC00342-202ENST00000448494 DHX29Q7Z478 1369 aaKnown RBP13.47□□□□□ -0.25
LINC00342-202ENST00000448494 NINLQ9Y2I6 1382 aa13.47□□□□□ -0.25
LINC00342-202ENST00000448494 TBC1D2Q9BYX2 928 aa13.46□□□□□ -0.25
LINC00342-202ENST00000448494 CCDC144AA2RUR9 1427 aa13.46□□□□□ -0.25
LINC00342-202ENST00000448494 UACAQ9BZF9 1416 aa13.46□□□□□ -0.25
LINC00342-202ENST00000448494 IBTKQ9P2D0 1353 aaPredicted RBP13.46□□□□□ -0.25
LINC00342-202ENST00000448494 XPCQ01831 940 aaPredicted RBP13.46□□□□□ -0.25
LINC00342-202ENST00000448494 ATP2B3Q16720 1220 aa13.46□□□□□ -0.25
LINC00342-202ENST00000448494 GTF2F1P35269 517 aaKnown RBP eCLIP13.45□□□□□ -0.26
LINC00342-202ENST00000448494 ZNF771Q7L3S4 317 aaPredicted RBP13.45□□□□□ -0.26
LINC00342-202ENST00000448494 PRIMPOLQ96LW4 560 aa13.44□□□□□ -0.26
LINC00342-202ENST00000448494 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.44□□□□□ -0.26
LINC00342-202ENST00000448494 ZKSCAN5Q9Y2L8 839 aa13.44□□□□□ -0.26
LINC00342-202ENST00000448494 RBM25P49756 843 aaKnown RBP13.44□□□□□ -0.26
LINC00342-202ENST00000448494 GABPB1Q06547 395 aaPredicted RBP13.44□□□□□ -0.26
LINC00342-202ENST00000448494 ZNF710Q8N1W2 664 aa13.44□□□□□ -0.26
LINC00342-202ENST00000448494 TULP1O00294 542 aaPredicted RBP13.43□□□□□ -0.26
LINC00342-202ENST00000448494 TIGD1Q96MW7 591 aa13.43□□□□□ -0.26
LINC00342-202ENST00000448494 SLC52A1Q9NWF4 448 aa13.43□□□□□ -0.26
LINC00342-202ENST00000448494 KIF7Q2M1P5 1343 aa13.43□□□□□ -0.26
LINC00342-202ENST00000448494 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.43□□□□□ -0.26
LINC00342-202ENST00000448494 TULP2O00295 520 aa13.43□□□□□ -0.26
LINC00342-202ENST00000448494 APPP05067 770 aa13.43□□□□□ -0.26
LINC00342-202ENST00000448494 HMGN5P82970 282 aaKnown RBP13.43□□□□□ -0.26
LINC00342-202ENST00000448494 WWC1Q8IX03 1113 aa13.43□□□□□ -0.26
LINC00342-202ENST00000448494 SOX12O15370 315 aa13.42□□□□□ -0.26
LINC00342-202ENST00000448494 AMER1Q5JTC6 1135 aaPredicted RBP13.42□□□□□ -0.26
LINC00342-202ENST00000448494 PRDM2Q13029 1718 aa13.42□□□□□ -0.26
LINC00342-202ENST00000448494 PTMAP06454 111 aaKnown RBP13.42□□□□□ -0.26
LINC00342-202ENST00000448494 MAPK8IP2Q13387 824 aaPredicted RBP13.42□□□□□ -0.26
LINC00342-202ENST00000448494 PDLIM2Q96JY6 352 aa13.42□□□□□ -0.26
LINC00342-202ENST00000448494 UPF2Q9HAU5 1272 aaKnown RBP13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 6.5 ms