RNA–Protein interactions for RNA: ENST00000414174.1

SF3B1-203, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 4

Gene SF3B1, Length 593 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-203ENST00000414174 NKX1-1Q15270 411 aaPredicted RBP6.74□□□□□ -1.33
SF3B1-203ENST00000414174 PPP1R15BQ5SWA1 713 aa6.73□□□□□ -1.33
SF3B1-203ENST00000414174 ZFRQ96KR1 1074 aaKnown RBP6.73□□□□□ -1.33
SF3B1-203ENST00000414174 WBP1LQ9NX94 342 aa6.73□□□□□ -1.33
SF3B1-203ENST00000414174 PROX2Q3B8N5 592 aa6.71□□□□□ -1.34
SF3B1-203ENST00000414174 CHGAP10645 457 aaKnown RBP6.7□□□□□ -1.34
SF3B1-203ENST00000414174 COL9A1P20849 921 aa6.7□□□□□ -1.34
SF3B1-203ENST00000414174 PDE4AP27815 886 aa6.7□□□□□ -1.34
SF3B1-203ENST00000414174 ZNF787Q6DD87 383 aa6.7□□□□□ -1.34
SF3B1-203ENST00000414174 DNAJC5Q9H3Z4 198 aa6.7□□□□□ -1.34
SF3B1-203ENST00000414174 KIAA1468Q9P260 1216 aa6.7□□□□□ -1.34
SF3B1-203ENST00000414174 FBXW7Q969H0 707 aa6.69□□□□□ -1.34
SF3B1-203ENST00000414174 TSR3Q9UJK0 312 aaKnown RBP6.69□□□□□ -1.34
SF3B1-203ENST00000414174 PCDHGA10Q9Y5H3 936 aa6.69□□□□□ -1.34
SF3B1-203ENST00000414174 V9GY48 417 aaPredicted RBP6.68□□□□□ -1.34
SF3B1-203ENST00000414174 MAP3K9P80192 1104 aa6.67□□□□□ -1.34
SF3B1-203ENST00000414174 PRKD2Q9BZL6 878 aa6.67□□□□□ -1.34
SF3B1-203ENST00000414174 RYDENQ9NUL5 291 aaKnown RBP6.67□□□□□ -1.34
SF3B1-203ENST00000414174 FAM98CQ17RN3 349 aaKnown RBP6.66□□□□□ -1.34
SF3B1-203ENST00000414174 TYW1BQ6NUM6 668 aa6.66□□□□□ -1.34
SF3B1-203ENST00000414174 ZNF775Q96BV0 537 aaPredicted RBP6.66□□□□□ -1.34
SF3B1-203ENST00000414174 PHF14O94880 888 aa6.65□□□□□ -1.34
SF3B1-203ENST00000414174 CDKN2AIPQ9NXV6 580 aaPredicted RBP6.65□□□□□ -1.34
SF3B1-203ENST00000414174 NCKAP5LQ9HCH0 1330 aa6.65□□□□□ -1.35
SF3B1-203ENST00000414174 LRCH3Q96II8 777 aa6.64□□□□□ -1.35
SF3B1-203ENST00000414174 HPS5Q9UPZ3 1129 aa6.64□□□□□ -1.35
SF3B1-203ENST00000414174 TJAP1Q5JTD0 557 aa6.63□□□□□ -1.35
SF3B1-203ENST00000414174 TRIM6-TRIM34B2RNG4 842 aa6.62□□□□□ -1.35
SF3B1-203ENST00000414174 RTN4Q9NQC3 1192 aaKnown RBP6.62□□□□□ -1.35
SF3B1-203ENST00000414174 C6orf132Q5T0Z8 1188 aa6.61□□□□□ -1.35
SF3B1-203ENST00000414174 SEPT9Q9UHD8 586 aaPredicted RBP6.61□□□□□ -1.35
SF3B1-203ENST00000414174 GTPBP6O43824 516 aaPredicted RBP6.6□□□□□ -1.35
SF3B1-203ENST00000414174 PPP4CP60510 307 aa6.6□□□□□ -1.35
SF3B1-203ENST00000414174 PPP1R18Q6NYC8 613 aa6.6□□□□□ -1.35
SF3B1-203ENST00000414174 DDX27Q96GQ7 796 aaKnown RBP6.6□□□□□ -1.35
SF3B1-203ENST00000414174 EPAS1Q99814 870 aa6.6□□□□□ -1.35
SF3B1-203ENST00000414174 PDZRN3Q9UPQ7 1066 aa6.6□□□□□ -1.35
SF3B1-203ENST00000414174 MFSD10Q14728 455 aa6.59□□□□□ -1.35
SF3B1-203ENST00000414174 LARP6Q9BRS8 491 aaKnown RBP6.59□□□□□ -1.35
SF3B1-203ENST00000414174 IL21Q9HBE4 155 aa6.58□□□□□ -1.36
SF3B1-203ENST00000414174 EIF4ENIF1Q9NRA8 985 aaKnown RBP6.58□□□□□ -1.36
SF3B1-203ENST00000414174 EMILIN3Q9NT22 766 aa6.57□□□□□ -1.36
SF3B1-203ENST00000414174 DCAF8L2P0C7V8 631 aa6.56□□□□□ -1.36
SF3B1-203ENST00000414174 PACS2Q86VP3 889 aa6.56□□□□□ -1.36
SF3B1-203ENST00000414174 AMER1Q5JTC6 1135 aaPredicted RBP6.54□□□□□ -1.36
SF3B1-203ENST00000414174 MTRQ99707 1265 aa6.54□□□□□ -1.36
SF3B1-203ENST00000414174 TMUB1Q9BVT8 246 aa6.53□□□□□ -1.36
SF3B1-203ENST00000414174 CADPS2Q86UW7 1296 aa6.52□□□□□ -1.37
SF3B1-203ENST00000414174 GGCXP38435 758 aa6.51□□□□□ -1.37
SF3B1-203ENST00000414174 TSKSQ9UJT2 592 aa6.51□□□□□ -1.37
SF3B1-203ENST00000414174 DGAT1O75907 488 aa6.5□□□□□ -1.37
SF3B1-203ENST00000414174 ERICH6Q7L0X2 663 aa6.5□□□□□ -1.37
SF3B1-203ENST00000414174 SAMD7Q7Z3H4 446 aa6.5□□□□□ -1.37
SF3B1-203ENST00000414174 ZNF516Q92618 1163 aa6.5□□□□□ -1.37
SF3B1-203ENST00000414174 LCE2AQ5TA79 106 aaPredicted RBP6.49□□□□□ -1.37
SF3B1-203ENST00000414174 TREML4Q6UXN2 200 aa6.49□□□□□ -1.37
SF3B1-203ENST00000414174 TRIM67Q6ZTA4 783 aa6.47□□□□□ -1.37
SF3B1-203ENST00000414174 RBM33Q96EV2 1170 aaKnown RBP6.47□□□□□ -1.37
SF3B1-203ENST00000414174 POTECB2RU33 542 aa6.46□□□□□ -1.38
SF3B1-203ENST00000414174 CAMK2BQ13554 666 aa6.46□□□□□ -1.38
SF3B1-203ENST00000414174 PKDCCQ504Y2 493 aa6.46□□□□□ -1.38
SF3B1-203ENST00000414174 NKX2-3Q8TAU0 364 aa6.46□□□□□ -1.38
SF3B1-203ENST00000414174 BBXQ8WY36 941 aaPredicted RBP6.46□□□□□ -1.38
SF3B1-203ENST00000414174 PRR20EP86478 221 aa6.45□□□□□ -1.38
SF3B1-203ENST00000414174 PRR20CP86479 221 aa6.45□□□□□ -1.38
SF3B1-203ENST00000414174 PRR20DP86480 221 aa6.45□□□□□ -1.38
SF3B1-203ENST00000414174 PRR20BP86481 221 aa6.45□□□□□ -1.38
SF3B1-203ENST00000414174 PRR20AP86496 221 aa6.45□□□□□ -1.38
SF3B1-203ENST00000414174 NECTIN2Q92692 538 aa6.45□□□□□ -1.38
SF3B1-203ENST00000414174 SLC19A1P41440 591 aa6.44□□□□□ -1.38
SF3B1-203ENST00000414174 APLP1P51693 650 aa6.44□□□□□ -1.38
SF3B1-203ENST00000414174 HDGFP51858 240 aaKnown RBP6.44□□□□□ -1.38
SF3B1-203ENST00000414174 PRSS12P56730 875 aa6.44□□□□□ -1.38
SF3B1-203ENST00000414174 EN1Q05925 392 aaPredicted RBP6.44□□□□□ -1.38
SF3B1-203ENST00000414174 CERKQ8TCT0 537 aa6.44□□□□□ -1.38
SF3B1-203ENST00000414174 CDCA7LQ96GN5 454 aa6.44□□□□□ -1.38
SF3B1-203ENST00000414174 TATDN2Q93075 761 aa6.43□□□□□ -1.38
SF3B1-203ENST00000414174 ARXQ96QS3 562 aa6.43□□□□□ -1.38
SF3B1-203ENST00000414174 SMAPO00193 183 aa6.42□□□□□ -1.38
SF3B1-203ENST00000414174 PRKCSHP14314 528 aaPredicted RBP6.42□□□□□ -1.38
SF3B1-203ENST00000414174 TSR1Q2NL82 804 aaKnown RBP6.42□□□□□ -1.38
SF3B1-203ENST00000414174 DDX12PQ92771 950 aa6.42□□□□□ -1.38
SF3B1-203ENST00000414174 DPYSL4O14531 572 aa6.41□□□□□ -1.38
SF3B1-203ENST00000414174 MAP3K7O43318 606 aa6.41□□□□□ -1.38
SF3B1-203ENST00000414174 ZNF598Q86UK7 904 aaKnown RBP6.41□□□□□ -1.38
SF3B1-203ENST00000414174 FAM198AQ9UFP1 575 aa6.41□□□□□ -1.38
SF3B1-203ENST00000414174 NBPF26B4DH59 902 aa6.4□□□□□ -1.38
SF3B1-203ENST00000414174 ZPR1O75312 459 aa6.4□□□□□ -1.38
SF3B1-203ENST00000414174 SPRYD7Q5W111 196 aa6.4□□□□□ -1.38
SF3B1-203ENST00000414174 EMID1Q96A84 441 aaPredicted RBP6.4□□□□□ -1.38
SF3B1-203ENST00000414174 STK17AQ9UEE5 414 aa6.4□□□□□ -1.38
SF3B1-203ENST00000414174 PNMA3Q9UL41 463 aa6.39□□□□□ -1.39
SF3B1-203ENST00000414174 RNF223E7ERA6 249 aa6.38□□□□□ -1.39
SF3B1-203ENST00000414174 C3orf80F5H4A9 247 aa6.38□□□□□ -1.39
SF3B1-203ENST00000414174 NBR1Q14596 966 aa6.38□□□□□ -1.39
SF3B1-203ENST00000414174 COPS2P61201 443 aa6.37□□□□□ -1.39
SF3B1-203ENST00000414174 SPRYD3Q8NCJ5 442 aa6.37□□□□□ -1.39
SF3B1-203ENST00000414174 GDF9O60383 454 aa6.36□□□□□ -1.39
SF3B1-203ENST00000414174 PAXIP1Q6ZW49 1069 aaPredicted RBP6.36□□□□□ -1.39
SF3B1-203ENST00000414174 SLF2Q8IX21 1173 aa6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms