RNA–Protein interactions for RNA: ENST00000343200.9

VCAN-203, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 9,455 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-203ENST00000343200 CALCOCO1Q9P1Z2 691 aa7.54□□□□□ -1.2
VCAN-203ENST00000343200 NAT10Q9H0A0 1025 aaKnown RBP7.53□□□□□ -1.2
VCAN-203ENST00000343200 RSPH4AQ5TD94 716 aa7.53□□□□□ -1.2
VCAN-203ENST00000343200 DNAJC2Q99543 621 aaKnown RBP7.53□□□□□ -1.2
VCAN-203ENST00000343200 CAVIN1Q6NZI2 390 aaKnown RBP7.53□□□□□ -1.2
VCAN-203ENST00000343200 RWDD1Q9H446 243 aaPredicted RBP7.53□□□□□ -1.2
VCAN-203ENST00000343200 MAPK8IP2Q13387 824 aaPredicted RBP7.53□□□□□ -1.2
VCAN-203ENST00000343200 EIF3JO75822 258 aaKnown RBP7.53□□□□□ -1.2
VCAN-203ENST00000343200 SPATA24Q86W54 205 aa7.53□□□□□ -1.2
VCAN-203ENST00000343200 AEBP1Q8IUX7 1158 aa7.53□□□□□ -1.2
VCAN-203ENST00000343200 RALBP1Q15311 655 aa7.53□□□□□ -1.2
VCAN-203ENST00000343200 IPO8O15397 1037 aaKnown RBP7.52□□□□□ -1.21
VCAN-203ENST00000343200 PMFBP1Q8TBY8 1022 aa7.52□□□□□ -1.21
VCAN-203ENST00000343200 BAZ1AQ9NRL2 1556 aaPredicted RBP7.52□□□□□ -1.21
VCAN-203ENST00000343200 PHLDB1Q86UU1 1377 aa7.52□□□□□ -1.21
VCAN-203ENST00000343200 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.52□□□□□ -1.21
VCAN-203ENST00000343200 MRE11P49959 708 aa7.51□□□□□ -1.21
VCAN-203ENST00000343200 DHX8Q14562 1220 aaKnown RBP7.51□□□□□ -1.21
VCAN-203ENST00000343200 CHMP4CQ96CF2 233 aa7.51□□□□□ -1.21
VCAN-203ENST00000343200 SCN8AQ9UQD0 1980 aa7.51□□□□□ -1.21
VCAN-203ENST00000343200 STAG3Q9UJ98 1225 aa7.51□□□□□ -1.21
VCAN-203ENST00000343200 RASSF8Q8NHQ8 419 aa7.51□□□□□ -1.21
VCAN-203ENST00000343200 CREBRFQ8IUR6 639 aa7.51□□□□□ -1.21
VCAN-203ENST00000343200 CCDC173Q0VFZ6 552 aa7.51□□□□□ -1.21
VCAN-203ENST00000343200 SETSIPP0DME0 302 aa7.5□□□□□ -1.21
VCAN-203ENST00000343200 KNL1Q8NG31 2342 aa7.5□□□□□ -1.21
VCAN-203ENST00000343200 MFAP1P55081 439 aaKnown RBP7.5□□□□□ -1.21
VCAN-203ENST00000343200 RCAN3Q9UKA8 241 aa7.5□□□□□ -1.21
VCAN-203ENST00000343200 SCRIBQ14160 1630 aa7.5□□□□□ -1.21
VCAN-203ENST00000343200 CT47B1P0C2W7 299 aaPredicted RBP7.5□□□□□ -1.21
VCAN-203ENST00000343200 LUZP1Q86V48 1076 aa7.5□□□□□ -1.21
VCAN-203ENST00000343200 R3HCC1Q9Y3T6 440 aaKnown RBP7.5□□□□□ -1.21
VCAN-203ENST00000343200 PDIA4P13667 645 aaKnown RBP7.49□□□□□ -1.21
VCAN-203ENST00000343200 IQCEQ6IPM2 695 aa7.49□□□□□ -1.21
VCAN-203ENST00000343200 CACNA1FO60840 1977 aa7.49□□□□□ -1.21
VCAN-203ENST00000343200 CHD4Q14839 1912 aa7.49□□□□□ -1.21
VCAN-203ENST00000343200 UQCRHLA0A096LP55 91 aa7.49□□□□□ -1.21
VCAN-203ENST00000343200 UQCRHP07919 91 aa7.49□□□□□ -1.21
VCAN-203ENST00000343200 GPATCH11Q8N954 259 aa7.49□□□□□ -1.21
VCAN-203ENST00000343200 CLIP1P30622 1438 aa7.49□□□□□ -1.21
VCAN-203ENST00000343200 H3BQV1 296 aa7.49□□□□□ -1.21
VCAN-203ENST00000343200 FAM161AQ3B820 660 aa7.49□□□□□ -1.21
VCAN-203ENST00000343200 IFFO2Q5TF58 517 aa7.49□□□□□ -1.21
VCAN-203ENST00000343200 PDCL2Q8N4E4 241 aa7.48□□□□□ -1.21
VCAN-203ENST00000343200 ESF1Q9H501 851 aaKnown RBP7.48□□□□□ -1.21
VCAN-203ENST00000343200 SWAP70Q9UH65 585 aa7.48□□□□□ -1.21
VCAN-203ENST00000343200 KTN1Q86UP2 1357 aaKnown RBP7.48□□□□□ -1.21
VCAN-203ENST00000343200 PAIP2Q9BPZ3 127 aaKnown RBP7.48□□□□□ -1.21
VCAN-203ENST00000343200 NUDCQ9Y266 331 aa7.48□□□□□ -1.21
VCAN-203ENST00000343200 CGNL1Q0VF96 1302 aa7.48□□□□□ -1.21
VCAN-203ENST00000343200 BBXQ8WY36 941 aaPredicted RBP7.48□□□□□ -1.21
VCAN-203ENST00000343200 ISY1Q9ULR0 285 aaKnown RBP7.48□□□□□ -1.21
VCAN-203ENST00000343200 PDCL3Q9H2J4 239 aa7.48□□□□□ -1.21
VCAN-203ENST00000343200 ERICH4A6NGS2 130 aa7.48□□□□□ -1.21
VCAN-203ENST00000343200 GOLGA6L10A0A0M3HER8 536 aa7.48□□□□□ -1.21
VCAN-203ENST00000343200 TMCO5BA8MYB1 307 aa7.48□□□□□ -1.21
VCAN-203ENST00000343200 CPSF2Q9P2I0 782 aaKnown RBP7.48□□□□□ -1.21
VCAN-203ENST00000343200 SLTMQ9NWH9 1034 aaKnown RBP eCLIP7.47□□□□□ -1.21
VCAN-203ENST00000343200 ERLIN1O75477 346 aa7.47□□□□□ -1.21
VCAN-203ENST00000343200 MYH2Q9UKX2 1941 aa7.47□□□□□ -1.21
VCAN-203ENST00000343200 SLC26A8Q96RN1 970 aa7.47□□□□□ -1.21
VCAN-203ENST00000343200 ERLIN2O94905 339 aa7.47□□□□□ -1.21
VCAN-203ENST00000343200 RNF20Q5VTR2 975 aa7.47□□□□□ -1.21
VCAN-203ENST00000343200 HIRIP3Q9BW71 556 aaPredicted RBP7.47□□□□□ -1.21
VCAN-203ENST00000343200 CLGNO14967 610 aa7.47□□□□□ -1.21
VCAN-203ENST00000343200 U2SURPO15042 1029 aaKnown RBP7.47□□□□□ -1.21
VCAN-203ENST00000343200 LETM1O95202 739 aaPredicted RBP7.46□□□□□ -1.21
VCAN-203ENST00000343200 SF3A1Q15459 793 aaKnown RBP7.46□□□□□ -1.21
VCAN-203ENST00000343200 CCAR1Q8IX12 1150 aaKnown RBP7.46□□□□□ -1.21
VCAN-203ENST00000343200 CENPQQ7L2Z9 268 aaPredicted RBP7.46□□□□□ -1.21
VCAN-203ENST00000343200 ZNF777Q9ULD5 760 aaPredicted RBP7.46□□□□□ -1.21
VCAN-203ENST00000343200 CCDC9Q9Y3X0 531 aaKnown RBP7.46□□□□□ -1.21
VCAN-203ENST00000343200 EZRP15311 586 aaKnown RBP7.46□□□□□ -1.21
VCAN-203ENST00000343200 GTF2A1P52655 376 aaPredicted RBP7.46□□□□□ -1.21
VCAN-203ENST00000343200 ENOX2Q16206 610 aaKnown RBP7.46□□□□□ -1.21
VCAN-203ENST00000343200 RABEP1Q15276 862 aa7.46□□□□□ -1.22
VCAN-203ENST00000343200 TTLL5Q6EMB2 1281 aa7.46□□□□□ -1.22
VCAN-203ENST00000343200 BCCIPQ9P287 314 aaKnown RBP eCLIP7.46□□□□□ -1.22
VCAN-203ENST00000343200 SEPT6Q14141 434 aa7.46□□□□□ -1.22
VCAN-203ENST00000343200 TIGD1Q96MW7 591 aa7.46□□□□□ -1.22
VCAN-203ENST00000343200 TRIP11Q15643 1979 aa7.46□□□□□ -1.22
VCAN-203ENST00000343200 CTR9Q6PD62 1173 aa7.46□□□□□ -1.22
VCAN-203ENST00000343200 KIF7Q2M1P5 1343 aa7.46□□□□□ -1.22
VCAN-203ENST00000343200 CGNQ9P2M7 1197 aaKnown RBP7.45□□□□□ -1.22
VCAN-203ENST00000343200 GOLGA3Q08378 1498 aa7.45□□□□□ -1.22
VCAN-203ENST00000343200 MTUS2Q5JR59 1369 aa7.45□□□□□ -1.22
VCAN-203ENST00000343200 RSF1Q96T23 1441 aaPredicted RBP7.45□□□□□ -1.22
VCAN-203ENST00000343200 WDR66Q8TBY9 1149 aa7.45□□□□□ -1.22
VCAN-203ENST00000343200 LRRCC1Q9C099 1032 aa7.45□□□□□ -1.22
VCAN-203ENST00000343200 MYH13Q9UKX3 1938 aa7.45□□□□□ -1.22
VCAN-203ENST00000343200 ANKRD18AQ8IVF6 992 aa7.45□□□□□ -1.22
VCAN-203ENST00000343200 ITPRIPQ8IWB1 547 aa7.45□□□□□ -1.22
VCAN-203ENST00000343200 CFAP57Q96MR6 1250 aa7.45□□□□□ -1.22
VCAN-203ENST00000343200 ZMYND15Q9H091 742 aa7.45□□□□□ -1.22
VCAN-203ENST00000343200 KDM2AQ9Y2K7 1162 aa7.45□□□□□ -1.22
VCAN-203ENST00000343200 KIAA1328Q86T90 577 aa7.45□□□□□ -1.22
VCAN-203ENST00000343200 MYH1P12882 1939 aa7.44□□□□□ -1.22
VCAN-203ENST00000343200 CENPHQ9H3R5 247 aa7.44□□□□□ -1.22
VCAN-203ENST00000343200 MYO15BQ96JP2 1530 aa7.44□□□□□ -1.22
VCAN-203ENST00000343200 TRIM6-TRIM34B2RNG4 842 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms