RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 NUP153P49790 1475 aaKnown RBP8.98□□□□□ -0.97
SF3B1-201ENST00000335508 CDK13Q14004 1512 aaKnown RBP8.98□□□□□ -0.97
SF3B1-201ENST00000335508 ADGRL1O94910 1474 aa8.98□□□□□ -0.97
SF3B1-201ENST00000335508 CCDC136Q96JN2 1154 aa8.98□□□□□ -0.97
SF3B1-201ENST00000335508 SALL2Q9Y467 1007 aaPredicted RBP8.98□□□□□ -0.97
SF3B1-201ENST00000335508 GPATCH8Q9UKJ3 1502 aaKnown RBP8.98□□□□□ -0.97
SF3B1-201ENST00000335508 ABCC5O15440 1437 aa8.98□□□□□ -0.97
SF3B1-201ENST00000335508 NGDNQ8NEJ9 315 aaKnown RBP8.97□□□□□ -0.97
SF3B1-201ENST00000335508 ARHGEF11O15085 1522 aa8.97□□□□□ -0.97
SF3B1-201ENST00000335508 ERICH6BQ5W0A0 696 aa8.97□□□□□ -0.97
SF3B1-201ENST00000335508 PRKRIP1Q9H875 184 aaPredicted RBP8.97□□□□□ -0.97
SF3B1-201ENST00000335508 SCAF1Q9H7N4 1312 aaKnown RBP8.96□□□□□ -0.97
SF3B1-201ENST00000335508 CGNL1Q0VF96 1302 aa8.96□□□□□ -0.98
SF3B1-201ENST00000335508 U2SURPO15042 1029 aaKnown RBP8.96□□□□□ -0.98
SF3B1-201ENST00000335508 ADAMTS12P58397 1594 aa8.96□□□□□ -0.98
SF3B1-201ENST00000335508 FKBP8Q14318 412 aa8.95□□□□□ -0.98
SF3B1-201ENST00000335508 FANCAO15360 1455 aa8.94□□□□□ -0.98
SF3B1-201ENST00000335508 SENP3Q9H4L4 574 aaPredicted RBP8.94□□□□□ -0.98
SF3B1-201ENST00000335508 ABCC2Q92887 1545 aa8.94□□□□□ -0.98
SF3B1-201ENST00000335508 TXNDC2Q86VQ3 553 aa8.94□□□□□ -0.98
SF3B1-201ENST00000335508 TEX14Q8IWB6 1497 aa8.94□□□□□ -0.98
SF3B1-201ENST00000335508 U2AF1L5P0DN76 240 aaPredicted RBP8.94□□□□□ -0.98
SF3B1-201ENST00000335508 U2AF1Q01081 240 aaKnown RBP eCLIP8.94□□□□□ -0.981e-13■■□□□ 13.1
SF3B1-201ENST00000335508 CC2D1BQ5T0F9 858 aaKnown RBP8.94□□□□□ -0.98
SF3B1-201ENST00000335508 MYH16Q9H6N6 1097 aa8.94□□□□□ -0.98
SF3B1-201ENST00000335508 CFAP70Q5T0N1 1121 aa8.93□□□□□ -0.98
SF3B1-201ENST00000335508 UPF2Q9HAU5 1272 aaKnown RBP8.93□□□□□ -0.98
SF3B1-201ENST00000335508 ASXL2Q76L83 1435 aa8.93□□□□□ -0.98
SF3B1-201ENST00000335508 LMOD3Q0VAK6 560 aa8.93□□□□□ -0.98
SF3B1-201ENST00000335508 SUPT6HQ7KZ85 1726 aaKnown RBP8.92□□□□□ -0.98
SF3B1-201ENST00000335508 PRDM2Q13029 1718 aa8.92□□□□□ -0.98
SF3B1-201ENST00000335508 PCF11O94913 1555 aaKnown RBP8.92□□□□□ -0.98
SF3B1-201ENST00000335508 MYBBP1AQ9BQG0 1328 aaKnown RBP8.92□□□□□ -0.98
SF3B1-201ENST00000335508 ABCC10Q5T3U5 1492 aa8.91□□□□□ -0.98
SF3B1-201ENST00000335508 ANKLE2Q86XL3 938 aa8.91□□□□□ -0.98
SF3B1-201ENST00000335508 HDAC5Q9UQL6 1122 aa8.91□□□□□ -0.98
SF3B1-201ENST00000335508 BCL11AQ9H165 835 aa8.91□□□□□ -0.98
SF3B1-201ENST00000335508 CAMSAP2Q08AD1 1489 aa8.91□□□□□ -0.98
SF3B1-201ENST00000335508 DISP1Q96F81 1524 aa8.91□□□□□ -0.98
SF3B1-201ENST00000335508 WDR7Q9Y4E6 1490 aa8.91□□□□□ -0.98
SF3B1-201ENST00000335508 TNNT2P45379 298 aaPredicted RBP8.91□□□□□ -0.98
SF3B1-201ENST00000335508 PANK3Q9H999 370 aa8.9□□□□□ -0.98
SF3B1-201ENST00000335508 RTEL1-TNFRSF6BF6WH68 1400 aa8.9□□□□□ -0.98
SF3B1-201ENST00000335508 CCDC7Q96M83 1385 aa8.9□□□□□ -0.98
SF3B1-201ENST00000335508 NEUROD2Q15784 382 aa8.9□□□□□ -0.98
SF3B1-201ENST00000335508 IPO8O15397 1037 aaKnown RBP8.89□□□□□ -0.99
SF3B1-201ENST00000335508 COG3Q96JB2 828 aa8.89□□□□□ -0.99
SF3B1-201ENST00000335508 MINK1Q8N4C8 1332 aaPredicted RBP8.89□□□□□ -0.99
SF3B1-201ENST00000335508 KIF7Q2M1P5 1343 aa8.89□□□□□ -0.99
SF3B1-201ENST00000335508 ZNF518AQ6AHZ1 1483 aa8.89□□□□□ -0.99
SF3B1-201ENST00000335508 IDI1Q13907 227 aa8.88□□□□□ -0.99
SF3B1-201ENST00000335508 ABCA5Q8WWZ7 1642 aa8.88□□□□□ -0.99
SF3B1-201ENST00000335508 KIF14Q15058 1648 aa8.88□□□□□ -0.99
SF3B1-201ENST00000335508 RTF1Q92541 710 aaKnown RBP8.88□□□□□ -0.99
SF3B1-201ENST00000335508 ZNF692Q9BU19 519 aaPredicted RBP8.88□□□□□ -0.99
SF3B1-201ENST00000335508 EIF4G3O43432 1585 aaKnown RBP8.88□□□□□ -0.99
SF3B1-201ENST00000335508 ATAD2Q6PL18 1390 aa8.88□□□□□ -0.99
SF3B1-201ENST00000335508 ANP32AP39687 249 aaKnown RBP8.87□□□□□ -0.99
SF3B1-201ENST00000335508 NUTM2DQ5VT03 806 aaPredicted RBP8.87□□□□□ -0.99
SF3B1-201ENST00000335508 CCDC61Q9Y6R9 512 aa8.87□□□□□ -0.99
SF3B1-201ENST00000335508 AMPHP49418 695 aa8.87□□□□□ -0.99
SF3B1-201ENST00000335508 NBPF8Q3BBV2 869 aa8.87□□□□□ -0.99
SF3B1-201ENST00000335508 GOLGA2Q08379 1002 aa8.86□□□□□ -0.99
SF3B1-201ENST00000335508 RTL5Q5HYW3 569 aaPredicted RBP8.86□□□□□ -0.99
SF3B1-201ENST00000335508 KIAA0556O60303 1618 aa8.86□□□□□ -0.99
SF3B1-201ENST00000335508 ZBTB7CA1YPR0 619 aa8.86□□□□□ -0.99
SF3B1-201ENST00000335508 PAK3O75914 559 aaPredicted RBP8.86□□□□□ -0.99
SF3B1-201ENST00000335508 FTSJ3Q8IY81 847 aaKnown RBP8.86□□□□□ -0.99
SF3B1-201ENST00000335508 SHANK2Q9UPX8 1470 aa8.86□□□□□ -0.99
SF3B1-201ENST00000335508 RPRD2Q5VT52 1461 aaKnown RBP8.85□□□□□ -0.99
SF3B1-201ENST00000335508 NBPF1Q3BBV0 1214 aa8.85□□□□□ -0.99
SF3B1-201ENST00000335508 TCOF1Q13428 1488 aaKnown RBP8.85□□□□□ -0.99
SF3B1-201ENST00000335508 CNTLNQ9NXG0 1405 aa8.84□□□□□ -0.99
SF3B1-201ENST00000335508 PUS7Q96PZ0 661 aaKnown RBP8.84□□□□□ -0.99
SF3B1-201ENST00000335508 PPP4R2Q9NY27 417 aa8.84□□□□□ -0.99
SF3B1-201ENST00000335508 TARBP1Q13395 1621 aaKnown RBP8.84□□□□□ -0.99
SF3B1-201ENST00000335508 UHRF1BP1LA0JNW5 1464 aa8.84□□□□□ -0.99
SF3B1-201ENST00000335508 A2MP01023 1474 aa8.84□□□□□ -0.99
SF3B1-201ENST00000335508 TMEM132EQ6IEE7 984 aa8.84□□□□□ -0.99
SF3B1-201ENST00000335508 RAPGEF6Q8TEU7 1601 aa8.83□□□□□ -1
SF3B1-201ENST00000335508 CSB-PGBD3P0DP91 1061 aa8.83□□□□□ -1
SF3B1-201ENST00000335508 PROSER2Q86WR7 435 aaPredicted RBP8.83□□□□□ -1
SF3B1-201ENST00000335508 NEO1Q92859 1461 aa8.83□□□□□ -1
SF3B1-201ENST00000335508 ERBINQ96RT1 1412 aa8.83□□□□□ -1
SF3B1-201ENST00000335508 KDM5BQ9UGL1 1544 aa8.83□□□□□ -1
SF3B1-201ENST00000335508 SOX12O15370 315 aa8.83□□□□□ -1
SF3B1-201ENST00000335508 ATF3P18847 181 aa8.83□□□□□ -1
SF3B1-201ENST00000335508 RTN4Q9NQC3 1192 aaKnown RBP8.82□□□□□ -1
SF3B1-201ENST00000335508 PODXL2Q9NZ53 605 aa8.82□□□□□ -1
SF3B1-201ENST00000335508 SUPT16HQ9Y5B9 1047 aaKnown RBP8.82□□□□□ -1
SF3B1-201ENST00000335508 BRD4O60885 1362 aaPredicted RBP8.82□□□□□ -1
SF3B1-201ENST00000335508 GPRASP1Q5JY77 1395 aa8.82□□□□□ -1
SF3B1-201ENST00000335508 PLEKHG5O94827 1062 aa8.81□□□□□ -1
SF3B1-201ENST00000335508 STK31Q9BXU1 1019 aa8.81□□□□□ -1
SF3B1-201ENST00000335508 DIAPH1O60610 1272 aaKnown RBP8.81□□□□□ -1
SF3B1-201ENST00000335508 C14orf93Q9H972 538 aaKnown RBP8.81□□□□□ -1
SF3B1-201ENST00000335508 CEP170Q5SW79 1584 aa8.81□□□□□ -1
SF3B1-201ENST00000335508 ZBED9Q6R2W3 1325 aa8.81□□□□□ -1
SF3B1-201ENST00000335508 CFAP44Q96MT7 982 aa8.8□□□□□ -1
SF3B1-201ENST00000335508 DMRT2Q9Y5R5 561 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms