RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 NGEFQ8N5V2 710 aa17.54■□□□□ 0.4
COL7A1-201ENST00000328333 KIF15Q9NS87 1388 aa17.54■□□□□ 0.4
COL7A1-201ENST00000328333 DDX49Q9Y6V7 483 aaKnown RBP17.54■□□□□ 0.4
COL7A1-201ENST00000328333 RDXP35241 583 aaKnown RBP17.54■□□□□ 0.4
COL7A1-201ENST00000328333 ZBED9Q6R2W3 1325 aa17.53■□□□□ 0.4
COL7A1-201ENST00000328333 CCP110O43303 1012 aa17.53■□□□□ 0.4
COL7A1-201ENST00000328333 STK31Q9BXU1 1019 aa17.53■□□□□ 0.4
COL7A1-201ENST00000328333 TPD52L1Q16890 204 aaPredicted RBP17.53■□□□□ 0.4
COL7A1-201ENST00000328333 CENPJQ9HC77 1338 aaPredicted RBP17.53■□□□□ 0.4
COL7A1-201ENST00000328333 MYO6Q9UM54 1294 aa17.53■□□□□ 0.4
COL7A1-201ENST00000328333 ERCC4Q92889 916 aaPredicted RBP17.52■□□□□ 0.4
COL7A1-201ENST00000328333 ROCK1Q13464 1354 aa17.52■□□□□ 0.4
COL7A1-201ENST00000328333 NLRP13Q86W25 1043 aa17.51■□□□□ 0.39
COL7A1-201ENST00000328333 NAT10Q9H0A0 1025 aaKnown RBP17.51■□□□□ 0.39
COL7A1-201ENST00000328333 CGNL1Q0VF96 1302 aa17.51■□□□□ 0.39
COL7A1-201ENST00000328333 SF3A1Q15459 793 aaKnown RBP17.51■□□□□ 0.39
COL7A1-201ENST00000328333 H3BQV1 296 aa17.51■□□□□ 0.39
COL7A1-201ENST00000328333 IFFO2Q5TF58 517 aa17.51■□□□□ 0.39
COL7A1-201ENST00000328333 ISY1Q9ULR0 285 aaKnown RBP17.5■□□□□ 0.39
COL7A1-201ENST00000328333 TRIM6-TRIM34B2RNG4 842 aa17.5■□□□□ 0.39
COL7A1-201ENST00000328333 FMN1Q68DA7 1419 aa17.49■□□□□ 0.39
COL7A1-201ENST00000328333 CCAR2Q8N163 923 aaKnown RBP17.49■□□□□ 0.39
COL7A1-201ENST00000328333 CCDC39Q9UFE4 941 aa17.49■□□□□ 0.39
COL7A1-201ENST00000328333 FAM13BQ9NYF5 915 aa17.48■□□□□ 0.39
COL7A1-201ENST00000328333 HDGFL2Q7Z4V5 671 aaPredicted RBP17.47■□□□□ 0.39
COL7A1-201ENST00000328333 SMC4Q9NTJ3 1288 aa17.46■□□□□ 0.39
COL7A1-201ENST00000328333 CAGE1Q8TC20 777 aa17.46■□□□□ 0.39
COL7A1-201ENST00000328333 USP8P40818 1118 aa17.45■□□□□ 0.38
COL7A1-201ENST00000328333 NUCB2P80303 420 aa17.45■□□□□ 0.38
COL7A1-201ENST00000328333 DCAF11Q8TEB1 546 aa17.45■□□□□ 0.38
COL7A1-201ENST00000328333 NCBP3Q53F19 620 aaKnown RBP17.44■□□□□ 0.38
COL7A1-201ENST00000328333 HOMER1Q86YM7 354 aa17.44■□□□□ 0.38
COL7A1-201ENST00000328333 H0YHG0 523 aa17.44■□□□□ 0.38
COL7A1-201ENST00000328333 CAVIN1Q6NZI2 390 aaKnown RBP17.44■□□□□ 0.38
COL7A1-201ENST00000328333 PKNOX2Q96KN3 472 aa17.44■□□□□ 0.38
COL7A1-201ENST00000328333 PRM3Q9NNZ6 103 aa17.44■□□□□ 0.38
COL7A1-201ENST00000328333 KIF7Q2M1P5 1343 aa17.43■□□□□ 0.38
COL7A1-201ENST00000328333 LETM1O95202 739 aaPredicted RBP17.43■□□□□ 0.38
COL7A1-201ENST00000328333 GORABQ5T7V8 394 aa17.43■□□□□ 0.38
COL7A1-201ENST00000328333 MRE11P49959 708 aa17.42■□□□□ 0.38
COL7A1-201ENST00000328333 GOLGA6L7A0A1B0GV03 622 aa17.42■□□□□ 0.38
COL7A1-201ENST00000328333 INCENPQ9NQS7 918 aa17.42■□□□□ 0.38
COL7A1-201ENST00000328333 RUFY2Q8WXA3 655 aa17.41■□□□□ 0.38
COL7A1-201ENST00000328333 MNS1Q8NEH6 495 aa17.41■□□□□ 0.38
COL7A1-201ENST00000328333 CPLX2Q6PUV4 134 aaKnown RBP17.41■□□□□ 0.38
COL7A1-201ENST00000328333 CCDC173Q0VFZ6 552 aa17.41■□□□□ 0.38
COL7A1-201ENST00000328333 UACAQ9BZF9 1416 aa17.41■□□□□ 0.38
COL7A1-201ENST00000328333 RRP9O43818 475 aaKnown RBP17.41■□□□□ 0.38
COL7A1-201ENST00000328333 LEKR1Q6ZMV7 388 aa17.41■□□□□ 0.38
COL7A1-201ENST00000328333 CCDC47Q96A33 483 aaKnown RBP17.4■□□□□ 0.38
COL7A1-201ENST00000328333 TSPYL1Q9H0U9 437 aa17.4■□□□□ 0.38
COL7A1-201ENST00000328333 SRPK2P78362 688 aaKnown RBP17.4■□□□□ 0.38
COL7A1-201ENST00000328333 PES1O00541 588 aaKnown RBP17.4■□□□□ 0.38
COL7A1-201ENST00000328333 TMX4Q9H1E5 349 aaPredicted RBP17.4■□□□□ 0.38
COL7A1-201ENST00000328333 NASPP49321 788 aaPredicted RBP17.39■□□□□ 0.37
COL7A1-201ENST00000328333 PDE4AP27815 886 aa17.39■□□□□ 0.37
COL7A1-201ENST00000328333 FAM184AQ8NB25 1140 aa17.39■□□□□ 0.37
COL7A1-201ENST00000328333 ZRSR2Q15696 482 aaKnown RBP17.39■□□□□ 0.37
COL7A1-201ENST00000328333 CHMP5Q9NZZ3 219 aa17.39■□□□□ 0.37
COL7A1-201ENST00000328333 ZKSCAN1P17029 563 aaPredicted RBP17.38■□□□□ 0.37
COL7A1-201ENST00000328333 TERF2IPQ9NYB0 399 aa17.38■□□□□ 0.37
COL7A1-201ENST00000328333 MYBBP1AQ9BQG0 1328 aaKnown RBP17.38■□□□□ 0.37
COL7A1-201ENST00000328333 U2AF1L5P0DN76 240 aaPredicted RBP17.37■□□□□ 0.37
COL7A1-201ENST00000328333 U2AF1Q01081 240 aaKnown RBP eCLIP17.37■□□□□ 0.37
COL7A1-201ENST00000328333 CCDC18Q5T9S5 1454 aa17.37■□□□□ 0.37
COL7A1-201ENST00000328333 ZNF592Q92610 1267 aa17.37■□□□□ 0.37
COL7A1-201ENST00000328333 AKAP17AQ02040 695 aaKnown RBP17.37■□□□□ 0.37
COL7A1-201ENST00000328333 ANO8Q9HCE9 1232 aaPredicted RBP17.37■□□□□ 0.37
COL7A1-201ENST00000328333 EIF4G1Q04637 1599 aaKnown RBP17.36■□□□□ 0.37
COL7A1-201ENST00000328333 HSPA5P11021 654 aaKnown RBP17.36■□□□□ 0.37
COL7A1-201ENST00000328333 RNF20Q5VTR2 975 aa17.36■□□□□ 0.37
COL7A1-201ENST00000328333 IFT57Q9NWB7 429 aa17.36■□□□□ 0.37
COL7A1-201ENST00000328333 NEXNQ0ZGT2 675 aa17.35■□□□□ 0.37
COL7A1-201ENST00000328333 MBD3O95983 291 aa17.35■□□□□ 0.37
COL7A1-201ENST00000328333 CREBRFQ8IUR6 639 aa17.34■□□□□ 0.37
COL7A1-201ENST00000328333 E9PSI1 815 aa17.34■□□□□ 0.37
COL7A1-201ENST00000328333 SIN3AQ96ST3 1273 aa17.34■□□□□ 0.37
COL7A1-201ENST00000328333 TXLNBQ8N3L3 684 aa17.34■□□□□ 0.37
COL7A1-201ENST00000328333 APBB1O00213 710 aa17.34■□□□□ 0.37
COL7A1-201ENST00000328333 RAB3GAP2Q9H2M9 1393 aa17.34■□□□□ 0.37
COL7A1-201ENST00000328333 WWC1Q8IX03 1113 aa17.33■□□□□ 0.37
COL7A1-201ENST00000328333 ANKRD30AQ9BXX3 1397 aa17.33■□□□□ 0.36
COL7A1-201ENST00000328333 TRIM29Q14134 588 aa17.32■□□□□ 0.36
COL7A1-201ENST00000328333 SASS6Q6UVJ0 657 aa17.32■□□□□ 0.36
COL7A1-201ENST00000328333 PATL2C9JE40 543 aaKnown RBP17.32■□□□□ 0.36
COL7A1-201ENST00000328333 DDX19BQ9UMR2 479 aa17.31■□□□□ 0.36
COL7A1-201ENST00000328333 PLEKHG5O94827 1062 aa17.3■□□□□ 0.36
COL7A1-201ENST00000328333 KIAA0754O94854 1291 aa17.3■□□□□ 0.36
COL7A1-201ENST00000328333 SYNE3Q6ZMZ3 975 aa17.3■□□□□ 0.36
COL7A1-201ENST00000328333 GOLGA6L10A6NI86 522 aa17.3■□□□□ 0.36
COL7A1-201ENST00000328333 RRP1P56182 461 aaKnown RBP17.3■□□□□ 0.36
COL7A1-201ENST00000328333 IQCEQ6IPM2 695 aa17.3■□□□□ 0.36
COL7A1-201ENST00000328333 SENP3-EIF4A1A0A087X0R7 540 aa17.29■□□□□ 0.36
COL7A1-201ENST00000328333 CCDC73Q6ZRK6 1079 aa17.29■□□□□ 0.36
COL7A1-201ENST00000328333 DEF6Q9H4E7 631 aa17.28■□□□□ 0.36
COL7A1-201ENST00000328333 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.28■□□□□ 0.36
COL7A1-201ENST00000328333 TAF7LQ5H9L4 462 aa17.28■□□□□ 0.36
COL7A1-201ENST00000328333 EIF3JO75822 258 aaKnown RBP17.28■□□□□ 0.36
COL7A1-201ENST00000328333 SMARCA2P51531 1590 aa17.28■□□□□ 0.36
COL7A1-201ENST00000328333 CUX1P39880 1505 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms