RNA–Protein interactions for RNA: ENST00000316407.8

USF3-201, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 13,708 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-201ENST00000316407 CEP89Q96ST8 783 aa10.77□□□□□ -0.68
USF3-201ENST00000316407 AEBP1Q8IUX7 1158 aa10.77□□□□□ -0.69
USF3-201ENST00000316407 NASPP49321 788 aaPredicted RBP10.77□□□□□ -0.69
USF3-201ENST00000316407 CCDC9Q9Y3X0 531 aaKnown RBP10.77□□□□□ -0.69
USF3-201ENST00000316407 SF3A1Q15459 793 aaKnown RBP10.77□□□□□ -0.69
USF3-201ENST00000316407 ZNF330Q9Y3S2 320 aaPredicted RBP10.77□□□□□ -0.69
USF3-201ENST00000316407 PRDM10Q9NQV6 1147 aa10.76□□□□□ -0.69
USF3-201ENST00000316407 NFKBIBQ15653 356 aa10.76□□□□□ -0.69
USF3-201ENST00000316407 CWC15Q9P013 229 aaKnown RBP10.76□□□□□ -0.69
USF3-201ENST00000316407 ERICH4A6NGS2 130 aa10.76□□□□□ -0.69
USF3-201ENST00000316407 RDXP35241 583 aaKnown RBP10.76□□□□□ -0.69
USF3-201ENST00000316407 RBM25P49756 843 aaKnown RBP10.75□□□□□ -0.69
USF3-201ENST00000316407 VPS53Q5VIR6 699 aa10.75□□□□□ -0.69
USF3-201ENST00000316407 RUFY1Q96T51 708 aa10.75□□□□□ -0.69
USF3-201ENST00000316407 RSF1Q96T23 1441 aaPredicted RBP10.75□□□□□ -0.69
USF3-201ENST00000316407 SLC4A10Q6U841 1118 aa10.75□□□□□ -0.69
USF3-201ENST00000316407 GPATCH3Q96I76 525 aa10.74□□□□□ -0.69
USF3-201ENST00000316407 TMF1P82094 1093 aa10.74□□□□□ -0.69
USF3-201ENST00000316407 CCDC66A2RUB6 948 aa10.74□□□□□ -0.69
USF3-201ENST00000316407 FOSBP53539 338 aa10.74□□□□□ -0.69
USF3-201ENST00000316407 HSP90B2PQ58FF3 399 aa10.74□□□□□ -0.69
USF3-201ENST00000316407 GORABQ5T7V8 394 aa10.74□□□□□ -0.69
USF3-201ENST00000316407 EXOC6Q8TAG9 804 aa10.74□□□□□ -0.69
USF3-201ENST00000316407 KAT6BQ8WYB5 2073 aa10.73□□□□□ -0.69
USF3-201ENST00000316407 U2AF1L5P0DN76 240 aaPredicted RBP10.73□□□□□ -0.69
USF3-201ENST00000316407 U2AF1Q01081 240 aaKnown RBP eCLIP10.73□□□□□ -0.69
USF3-201ENST00000316407 SRPK2P78362 688 aaKnown RBP10.73□□□□□ -0.69
USF3-201ENST00000316407 CCDC34Q96HJ3 373 aa10.73□□□□□ -0.69
USF3-201ENST00000316407 BCL2L13Q9BXK5 485 aa10.73□□□□□ -0.69
USF3-201ENST00000316407 ROCK2O75116 1388 aaKnown RBP10.73□□□□□ -0.69
USF3-201ENST00000316407 TTLL5Q6EMB2 1281 aa10.73□□□□□ -0.69
USF3-201ENST00000316407 RILPL2Q969X0 211 aa10.73□□□□□ -0.69
USF3-201ENST00000316407 CENPJQ9HC77 1338 aaPredicted RBP10.73□□□□□ -0.69
USF3-201ENST00000316407 TPM1P09493 284 aa10.72□□□□□ -0.69
USF3-201ENST00000316407 EEA1Q15075 1411 aa10.72□□□□□ -0.69
USF3-201ENST00000316407 RTF1Q92541 710 aaKnown RBP10.72□□□□□ -0.69
USF3-201ENST00000316407 RNF214Q8ND24 703 aa10.72□□□□□ -0.69
USF3-201ENST00000316407 AK7Q96M32 723 aa10.72□□□□□ -0.69
USF3-201ENST00000316407 PCMTD1Q96MG8 357 aaPredicted RBP10.72□□□□□ -0.69
USF3-201ENST00000316407 CCNB3Q8WWL7 1395 aa10.72□□□□□ -0.69
USF3-201ENST00000316407 MPNDQ8N594 471 aa10.72□□□□□ -0.69
USF3-201ENST00000316407 MNS1Q8NEH6 495 aa10.71□□□□□ -0.69
USF3-201ENST00000316407 ARGLU1Q9NWB6 273 aaPredicted RBP10.71□□□□□ -0.7
USF3-201ENST00000316407 CENPQQ7L2Z9 268 aaPredicted RBP10.71□□□□□ -0.7
USF3-201ENST00000316407 TOMM22Q9NS69 142 aa10.71□□□□□ -0.7
USF3-201ENST00000316407 RRP7AQ9Y3A4 280 aaKnown RBP10.71□□□□□ -0.7
USF3-201ENST00000316407 CRBNQ96SW2 442 aa10.71□□□□□ -0.7
USF3-201ENST00000316407 TPM2P07951 284 aa10.71□□□□□ -0.7
USF3-201ENST00000316407 CFDP1Q9UEE9 299 aaPredicted RBP10.7□□□□□ -0.7
USF3-201ENST00000316407 ANKRD45Q5TZF3 282 aa10.7□□□□□ -0.7
USF3-201ENST00000316407 ATP6V1DQ9Y5K8 247 aa10.7□□□□□ -0.7
USF3-201ENST00000316407 MTERF4Q7Z6M4 381 aaKnown RBP10.7□□□□□ -0.7
USF3-201ENST00000316407 CCDC191Q8NCU4 936 aa10.7□□□□□ -0.7
USF3-201ENST00000316407 NAP1L1P55209 391 aaKnown RBP10.69□□□□□ -0.7
USF3-201ENST00000316407 BICD2Q8TD16 824 aa10.69□□□□□ -0.7
USF3-201ENST00000316407 CCDC39Q9UFE4 941 aa10.69□□□□□ -0.7
USF3-201ENST00000316407 SPC24Q8NBT2 197 aa10.69□□□□□ -0.7
USF3-201ENST00000316407 UQCRHLA0A096LP55 91 aa10.69□□□□□ -0.7
USF3-201ENST00000316407 UQCRHP07919 91 aa10.69□□□□□ -0.7
USF3-201ENST00000316407 TSPYL1Q9H0U9 437 aa10.69□□□□□ -0.7
USF3-201ENST00000316407 NPM1P06748 294 aaKnown RBP eCLIP10.68□□□□□ -0.7
USF3-201ENST00000316407 ZNF526Q8TF50 670 aaPredicted RBP10.68□□□□□ -0.7
USF3-201ENST00000316407 AXDND1Q5T1B0 1012 aaPredicted RBP10.68□□□□□ -0.7
USF3-201ENST00000316407 CAGE1Q8TC20 777 aa10.68□□□□□ -0.7
USF3-201ENST00000316407 RRP1P56182 461 aaKnown RBP10.68□□□□□ -0.7
USF3-201ENST00000316407 PDILTQ8N807 584 aa10.67□□□□□ -0.7
USF3-201ENST00000316407 MEX3CQ5U5Q3 659 aaKnown RBP10.67□□□□□ -0.7
USF3-201ENST00000316407 LEKR1Q6ZMV7 388 aa10.67□□□□□ -0.7
USF3-201ENST00000316407 IPO7O95373 1038 aaKnown RBP10.67□□□□□ -0.7
USF3-201ENST00000316407 ZHX1Q9UKY1 873 aaPredicted RBP10.67□□□□□ -0.7
USF3-201ENST00000316407 PAK3O75914 559 aaPredicted RBP10.67□□□□□ -0.7
USF3-201ENST00000316407 FRAT2O75474 233 aaPredicted RBP10.67□□□□□ -0.7
USF3-201ENST00000316407 FAM184AQ8NB25 1140 aa10.67□□□□□ -0.7
USF3-201ENST00000316407 SETD5Q9C0A6 1442 aa10.66□□□□□ -0.7
USF3-201ENST00000316407 VPS37CA5D8V6 355 aaPredicted RBP10.66□□□□□ -0.7
USF3-201ENST00000316407 HMMRO75330 724 aa10.66□□□□□ -0.7
USF3-201ENST00000316407 DIAPH3Q9NSV4 1193 aa10.66□□□□□ -0.7
USF3-201ENST00000316407 CAVIN1Q6NZI2 390 aaKnown RBP10.66□□□□□ -0.7
USF3-201ENST00000316407 KIF3AQ9Y496 699 aa10.66□□□□□ -0.7
USF3-201ENST00000316407 RRP9O43818 475 aaKnown RBP10.65□□□□□ -0.7
USF3-201ENST00000316407 STK26Q9P289 416 aa10.65□□□□□ -0.7
USF3-201ENST00000316407 IBSPP21815 317 aaPredicted RBP10.65□□□□□ -0.71
USF3-201ENST00000316407 RALBP1Q15311 655 aa10.64□□□□□ -0.71
USF3-201ENST00000316407 SASS6Q6UVJ0 657 aa10.64□□□□□ -0.71
USF3-201ENST00000316407 ACBD3Q9H3P7 528 aa10.64□□□□□ -0.71
USF3-201ENST00000316407 E9PSI1 815 aa10.63□□□□□ -0.71
USF3-201ENST00000316407 MARCH6O60337 910 aa10.63□□□□□ -0.71
USF3-201ENST00000316407 CHMP4AQ9BY43 222 aa10.63□□□□□ -0.71
USF3-201ENST00000316407 COG6Q9Y2V7 657 aa10.63□□□□□ -0.71
USF3-201ENST00000316407 MRE11P49959 708 aa10.63□□□□□ -0.71
USF3-201ENST00000316407 ARHGAP35Q9NRY4 1499 aa10.63□□□□□ -0.71
USF3-201ENST00000316407 EIF4G1Q04637 1599 aaKnown RBP10.63□□□□□ -0.71
USF3-201ENST00000316407 CDR1P51861 262 aa10.63□□□□□ -0.71
USF3-201ENST00000316407 ZFP91Q96JP5 570 aaPredicted RBP10.63□□□□□ -0.71
USF3-201ENST00000316407 TRIM5Q9C035 493 aa10.62□□□□□ -0.71
USF3-201ENST00000316407 CEP164Q9UPV0 1460 aa10.62□□□□□ -0.71
USF3-201ENST00000316407 TNNT1P13805 278 aa10.62□□□□□ -0.71
USF3-201ENST00000316407 STK31Q9BXU1 1019 aa10.62□□□□□ -0.71
USF3-201ENST00000316407 ANO2Q9NQ90 1003 aa10.62□□□□□ -0.71
USF3-201ENST00000316407 CGNL1Q0VF96 1302 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms