RNA–Protein interactions for RNA: ENST00000307017.8

USP38-201, Transcript of ubiquitin specific peptidase 38, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP38, Length 7,009 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP38-201ENST00000307017 IFFO2Q5TF58 517 aa15.72■□□□□ 0.11
USP38-201ENST00000307017 SYAP1Q96A49 352 aaPredicted RBP15.72■□□□□ 0.11
USP38-201ENST00000307017 MARCH6O60337 910 aa15.7■□□□□ 0.1
USP38-201ENST00000307017 FRAT2O75474 233 aaPredicted RBP15.7■□□□□ 0.1
USP38-201ENST00000307017 C11orf95C9JLR9 678 aaPredicted RBP15.7■□□□□ 0.1
USP38-201ENST00000307017 RBM10P98175 930 aaKnown RBP15.7■□□□□ 0.1
USP38-201ENST00000307017 CHMP4BQ9H444 224 aaKnown RBP15.69■□□□□ 0.1
USP38-201ENST00000307017 GSE1Q14687 1217 aa15.69■□□□□ 0.1
USP38-201ENST00000307017 TTLL5Q6EMB2 1281 aa15.69■□□□□ 0.1
USP38-201ENST00000307017 PCMTD1Q96MG8 357 aaPredicted RBP15.68■□□□□ 0.1
USP38-201ENST00000307017 G3V3G9 751 aa15.68■□□□□ 0.1
USP38-201ENST00000307017 DCAF8Q5TAQ9 597 aa15.68■□□□□ 0.1
USP38-201ENST00000307017 IPO8O15397 1037 aaKnown RBP15.68■□□□□ 0.1
USP38-201ENST00000307017 PDE4AP27815 886 aa15.68■□□□□ 0.1
USP38-201ENST00000307017 MTMR7Q9Y216 660 aa15.67■□□□□ 0.1
USP38-201ENST00000307017 COG6Q9Y2V7 657 aa15.67■□□□□ 0.1
USP38-201ENST00000307017 KIF16BQ96L93 1317 aa15.67■□□□□ 0.1
USP38-201ENST00000307017 PMFBP1Q8TBY8 1022 aa15.67■□□□□ 0.1
USP38-201ENST00000307017 TPM3P06753 285 aa15.65■□□□□ 0.1
USP38-201ENST00000307017 STK11IPQ8N1F8 1099 aa15.65■□□□□ 0.1
USP38-201ENST00000307017 CCNB3Q8WWL7 1395 aa15.65■□□□□ 0.1
USP38-201ENST00000307017 IL27Q8NEV9 243 aa15.65■□□□□ 0.1
USP38-201ENST00000307017 HDGFL2Q7Z4V5 671 aaPredicted RBP15.65■□□□□ 0.1
USP38-201ENST00000307017 CENPJQ9HC77 1338 aaPredicted RBP15.64■□□□□ 0.1
USP38-201ENST00000307017 EIF2S2P20042 333 aaKnown RBP15.64■□□□□ 0.09
USP38-201ENST00000307017 CNKSR2Q8WXI2 1034 aa15.64■□□□□ 0.09
USP38-201ENST00000307017 USP35Q9P2H5 1018 aa15.63■□□□□ 0.09
USP38-201ENST00000307017 FAM184AQ8NB25 1140 aa15.63■□□□□ 0.09
USP38-201ENST00000307017 STK31Q9BXU1 1019 aa15.63■□□□□ 0.09
USP38-201ENST00000307017 GOLGA6L19H0YKK7 550 aa15.62■□□□□ 0.09
USP38-201ENST00000307017 CCER2I3L3R5 266 aa15.62■□□□□ 0.09
USP38-201ENST00000307017 SETQ01105 290 aaPredicted RBP15.62■□□□□ 0.09
USP38-201ENST00000307017 GPATCH3Q96I76 525 aa15.62■□□□□ 0.09
USP38-201ENST00000307017 R3HCC1Q9Y3T6 440 aaKnown RBP15.62■□□□□ 0.09
USP38-201ENST00000307017 BRPF3Q9ULD4 1205 aa15.61■□□□□ 0.09
USP38-201ENST00000307017 TRAK1Q9UPV9 953 aa15.61■□□□□ 0.09
USP38-201ENST00000307017 RNF214Q8ND24 703 aa15.61■□□□□ 0.09
USP38-201ENST00000307017 CEP89Q96ST8 783 aa15.6■□□□□ 0.09
USP38-201ENST00000307017 ST18O60284 1047 aa15.6■□□□□ 0.09
USP38-201ENST00000307017 FYB1O15117 783 aa15.6■□□□□ 0.09
USP38-201ENST00000307017 ANO2Q9NQ90 1003 aa15.6■□□□□ 0.09
USP38-201ENST00000307017 CCDC27Q2M243 656 aa15.6■□□□□ 0.09
USP38-201ENST00000307017 SOGA1O94964 1423 aa15.6■□□□□ 0.09
USP38-201ENST00000307017 BECN2A8MW95 431 aa15.6■□□□□ 0.09
USP38-201ENST00000307017 HOMER1Q86YM7 354 aa15.6■□□□□ 0.09
USP38-201ENST00000307017 HTATSF1O43719 755 aaKnown RBP15.59■□□□□ 0.09
USP38-201ENST00000307017 RSPH6AQ9H0K4 717 aa15.58■□□□□ 0.09
USP38-201ENST00000307017 RAB3GAP2Q9H2M9 1393 aa15.58■□□□□ 0.09
USP38-201ENST00000307017 MPHOSPH9Q99550 1183 aa15.58■□□□□ 0.08
USP38-201ENST00000307017 MSH5O43196 834 aa15.57■□□□□ 0.08
USP38-201ENST00000307017 PLCD4Q9BRC7 762 aa15.57■□□□□ 0.08
USP38-201ENST00000307017 SETD5Q9C0A6 1442 aa15.57■□□□□ 0.08
USP38-201ENST00000307017 NAP1L1P55209 391 aaKnown RBP15.57■□□□□ 0.08
USP38-201ENST00000307017 HNRNPMP52272 730 aaKnown RBP eCLIP15.57■□□□□ 0.08
USP38-201ENST00000307017 APPP05067 770 aa15.56■□□□□ 0.08
USP38-201ENST00000307017 SPAG9O60271 1321 aaKnown RBP15.56■□□□□ 0.08
USP38-201ENST00000307017 AMPHP49418 695 aa15.56■□□□□ 0.08
USP38-201ENST00000307017 ABCC8Q09428 1581 aa15.55■□□□□ 0.08
USP38-201ENST00000307017 VPS37CA5D8V6 355 aaPredicted RBP15.55■□□□□ 0.08
USP38-201ENST00000307017 CHMP4CQ96CF2 233 aa15.55■□□□□ 0.08
USP38-201ENST00000307017 DDX11L8A8MPP1 907 aa15.55■□□□□ 0.08
USP38-201ENST00000307017 PANK3Q9H999 370 aa15.55■□□□□ 0.08
USP38-201ENST00000307017 PHF14O94880 888 aa15.54■□□□□ 0.08
USP38-201ENST00000307017 GTF2E1P29083 439 aaPredicted RBP15.54■□□□□ 0.08
USP38-201ENST00000307017 IFT57Q9NWB7 429 aa15.54■□□□□ 0.08
USP38-201ENST00000307017 BICD2Q8TD16 824 aa15.54■□□□□ 0.08
USP38-201ENST00000307017 FAM161AQ3B820 660 aa15.53■□□□□ 0.08
USP38-201ENST00000307017 PDILTQ8N807 584 aa15.53■□□□□ 0.08
USP38-201ENST00000307017 KANK1Q14678 1352 aa15.52■□□□□ 0.08
USP38-201ENST00000307017 CSPP1Q1MSJ5 1256 aa15.52■□□□□ 0.08
USP38-201ENST00000307017 L3MBTL2Q969R5 705 aa15.52■□□□□ 0.08
USP38-201ENST00000307017 WRNQ14191 1432 aaPredicted RBP eCLIP15.52■□□□□ 0.071e-7■■■■■ 66.8
USP38-201ENST00000307017 DHX16O60231 1041 aaKnown RBP15.52■□□□□ 0.07
USP38-201ENST00000307017 SPC24Q8NBT2 197 aa15.52■□□□□ 0.07
USP38-201ENST00000307017 NGDNQ8NEJ9 315 aaKnown RBP15.52■□□□□ 0.07
USP38-201ENST00000307017 SYTL4Q96C24 671 aaPredicted RBP15.52■□□□□ 0.07
USP38-201ENST00000307017 RRP1P56182 461 aaKnown RBP15.51■□□□□ 0.07
USP38-201ENST00000307017 TSR1Q2NL82 804 aaKnown RBP15.51■□□□□ 0.07
USP38-201ENST00000307017 CEBPZQ03701 1054 aaKnown RBP15.51■□□□□ 0.07
USP38-201ENST00000307017 NUP155O75694 1391 aa15.49■□□□□ 0.07
USP38-201ENST00000307017 LNPKQ9C0E8 428 aa15.49■□□□□ 0.07
USP38-201ENST00000307017 TMX4Q9H1E5 349 aaPredicted RBP15.49■□□□□ 0.07
USP38-201ENST00000307017 KLHL34Q8N239 644 aa15.49■□□□□ 0.07
USP38-201ENST00000307017 HMMRO75330 724 aa15.48■□□□□ 0.07
USP38-201ENST00000307017 NUTM2GQ5VZR2 741 aa15.48■□□□□ 0.07
USP38-201ENST00000307017 PANK1Q8TE04 598 aa15.48■□□□□ 0.07
USP38-201ENST00000307017 TNIKQ9UKE5 1360 aa15.48■□□□□ 0.07
USP38-201ENST00000307017 MAP4K4O95819 1239 aaPredicted RBP15.48■□□□□ 0.07
USP38-201ENST00000307017 RALBP1Q15311 655 aa15.47■□□□□ 0.07
USP38-201ENST00000307017 ARHGAP35Q9NRY4 1499 aa15.47■□□□□ 0.07
USP38-201ENST00000307017 C1orf115Q9H7X2 142 aa15.47■□□□□ 0.07
USP38-201ENST00000307017 APAF1O14727 1248 aa15.47■□□□□ 0.07
USP38-201ENST00000307017 HMOX1P09601 288 aa15.47■□□□□ 0.07
USP38-201ENST00000307017 AKAP17AQ02040 695 aaKnown RBP15.47■□□□□ 0.07
USP38-201ENST00000307017 FAM177BA6PVY3 158 aa15.46■□□□□ 0.07
USP38-201ENST00000307017 ST20-MTHFSA0A0A6YYL1 179 aa15.46■□□□□ 0.07
USP38-201ENST00000307017 IBSPP21815 317 aaPredicted RBP15.46■□□□□ 0.07
USP38-201ENST00000307017 AEBP2Q6ZN18 517 aaPredicted RBP15.46■□□□□ 0.07
USP38-201ENST00000307017 NFXL1Q6ZNB6 911 aa15.46■□□□□ 0.07
USP38-201ENST00000307017 DIAPH3Q9NSV4 1193 aa15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms