RNA–Protein interactions for RNA: ENST00000621181.4

CLK1-215, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best) BASIC

Gene CLK1, Length 1,843 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-215ENST00000621181 SYCE2Q6PIF2 218 aa8.88□□□□□ -0.99
CLK1-215ENST00000621181 SYNE3Q6ZMZ3 975 aa8.88□□□□□ -0.99
CLK1-215ENST00000621181 FAM228AQ86W67 206 aa8.88□□□□□ -0.99
CLK1-215ENST00000621181 CCDC60Q8IWA6 550 aaPredicted RBP8.88□□□□□ -0.99
CLK1-215ENST00000621181 LRRC43Q8N309 656 aa8.88□□□□□ -0.99
CLK1-215ENST00000621181 RIPOR3Q96MK2 946 aa8.88□□□□□ -0.99
CLK1-215ENST00000621181 LRRC2Q9BYS8 371 aa8.88□□□□□ -0.99
CLK1-215ENST00000621181 TMEM117Q9H0C3 514 aa8.88□□□□□ -0.99
CLK1-215ENST00000621181 CWH43Q9H720 699 aa8.88□□□□□ -0.99
CLK1-215ENST00000621181 ELAC1Q9H777 363 aaKnown RBP8.88□□□□□ -0.99
CLK1-215ENST00000621181 RIC8AQ9NPQ8 531 aa8.88□□□□□ -0.99
CLK1-215ENST00000621181 TCEAL9Q9UHQ7 104 aa8.88□□□□□ -0.99
CLK1-215ENST00000621181 MYH9P35579 1960 aaKnown RBP8.88□□□□□ -0.99
CLK1-215ENST00000621181 FAM186AA6NE01 2351 aa8.87□□□□□ -0.99
CLK1-215ENST00000621181 SPTBN4Q9H254 2564 aa8.87□□□□□ -0.99
CLK1-215ENST00000621181 HIDE1A8MVS5 230 aa8.87□□□□□ -0.99
CLK1-215ENST00000621181 MEIS1O00470 390 aa8.87□□□□□ -0.99
CLK1-215ENST00000621181 ZSCAN20P17040 1043 aaPredicted RBP8.87□□□□□ -0.99
CLK1-215ENST00000621181 SREBF1P36956 1147 aa8.87□□□□□ -0.99
CLK1-215ENST00000621181 ZNF484Q5JVG2 852 aa8.87□□□□□ -0.99
CLK1-215ENST00000621181 SWSAP1Q6NVH7 229 aa8.87□□□□□ -0.99
CLK1-215ENST00000621181 MIS18BP1Q6P0N0 1132 aa8.87□□□□□ -0.99
CLK1-215ENST00000621181 KCNT2Q6UVM3 1135 aa8.87□□□□□ -0.99
CLK1-215ENST00000621181 ABHD15Q6UXT9 468 aa8.87□□□□□ -0.99
CLK1-215ENST00000621181 TEX2Q8IWB9 1127 aa8.87□□□□□ -0.99
CLK1-215ENST00000621181 UBALD2Q8IYN6 164 aa8.87□□□□□ -0.99
CLK1-215ENST00000621181 RNF169Q8NCN4 708 aa8.87□□□□□ -0.99
CLK1-215ENST00000621181 KREMEN2Q8NCW0 462 aa8.87□□□□□ -0.99
CLK1-215ENST00000621181 CASP10Q92851 521 aa8.87□□□□□ -0.99
CLK1-215ENST00000621181 ZNF558Q96NG5 402 aa8.87□□□□□ -0.99
CLK1-215ENST00000621181 SORCS3Q9UPU3 1222 aa8.87□□□□□ -0.99
CLK1-215ENST00000621181 DCHS1Q96JQ0 3298 aa8.87□□□□□ -0.99
CLK1-215ENST00000621181 CNTNAP5Q8WYK1 1306 aa8.87□□□□□ -0.99
CLK1-215ENST00000621181 SMCO2A6NFE2 343 aa8.87□□□□□ -0.99
CLK1-215ENST00000621181 ZBTB42B2RXF5 422 aa8.87□□□□□ -0.99
CLK1-215ENST00000621181 IPO5O00410 1097 aaKnown RBP8.87□□□□□ -0.99
CLK1-215ENST00000621181 C22orf31O95567 290 aa8.87□□□□□ -0.99
CLK1-215ENST00000621181 ITIH3Q06033 890 aa8.87□□□□□ -0.99
CLK1-215ENST00000621181 AP3B2Q13367 1082 aa8.87□□□□□ -0.99
CLK1-215ENST00000621181 COL9A3Q14050 684 aaPredicted RBP8.87□□□□□ -0.99
CLK1-215ENST00000621181 BMS1Q14692 1282 aaKnown RBP8.87□□□□□ -0.99
CLK1-215ENST00000621181 TYW1BQ6NUM6 668 aa8.87□□□□□ -0.99
CLK1-215ENST00000621181 PPP1R18Q6NYC8 613 aa8.87□□□□□ -0.99
CLK1-215ENST00000621181 PLA2G4DQ86XP0 818 aa8.87□□□□□ -0.99
CLK1-215ENST00000621181 TMEM87AQ8NBN3 555 aa8.87□□□□□ -0.99
CLK1-215ENST00000621181 BBXQ8WY36 941 aaPredicted RBP8.87□□□□□ -0.99
CLK1-215ENST00000621181 NECTIN4Q96NY8 510 aa8.87□□□□□ -0.99
CLK1-215ENST00000621181 CASD1Q96PB1 797 aa8.87□□□□□ -0.99
CLK1-215ENST00000621181 MAP7D2Q96T17 732 aa8.87□□□□□ -0.99
CLK1-215ENST00000621181 POMKQ9H5K3 350 aa8.87□□□□□ -0.99
CLK1-215ENST00000621181 RBM28Q9NW13 759 aaKnown RBP8.87□□□□□ -0.99
CLK1-215ENST00000621181 SPG21Q9NZD8 308 aa8.87□□□□□ -0.99
CLK1-215ENST00000621181 CDH22Q9UJ99 828 aa8.87□□□□□ -0.99
CLK1-215ENST00000621181 CEP131Q9UPN4 1083 aa8.87□□□□□ -0.99
CLK1-215ENST00000621181 AKT3Q9Y243 479 aa8.87□□□□□ -0.99
CLK1-215ENST00000621181 SAMM50Q9Y512 469 aa8.87□□□□□ -0.99
CLK1-215ENST00000621181 HCFC2Q9Y5Z7 792 aa8.87□□□□□ -0.99
CLK1-215ENST00000621181 FAM86B1E9PN63 330 aa8.86□□□□□ -0.99
CLK1-215ENST00000621181 STK25O00506 426 aa8.86□□□□□ -0.99
CLK1-215ENST00000621181 SLC27A2O14975 620 aa8.86□□□□□ -0.99
CLK1-215ENST00000621181 GPR32O75388 356 aa8.86□□□□□ -0.99
CLK1-215ENST00000621181 BRD1O95696 1058 aa8.86□□□□□ -0.99
CLK1-215ENST00000621181 FAM86B2P0C5J1 330 aa8.86□□□□□ -0.99
CLK1-215ENST00000621181 TMOD1P28289 359 aa8.86□□□□□ -0.99
CLK1-215ENST00000621181 ALDH7A1P49419 539 aaKnown RBP8.86□□□□□ -0.99
CLK1-215ENST00000621181 CLCN3P51790 818 aa8.86□□□□□ -0.99
CLK1-215ENST00000621181 NLRP11P59045 1033 aaKnown RBP8.86□□□□□ -0.99
CLK1-215ENST00000621181 FAM189BP81408 668 aa8.86□□□□□ -0.99
CLK1-215ENST00000621181 SMC1AQ14683 1233 aaKnown RBP8.86□□□□□ -0.99
CLK1-215ENST00000621181 APOA5Q6Q788 366 aa8.86□□□□□ -0.99
CLK1-215ENST00000621181 LRRC55Q6ZSA7 311 aa8.86□□□□□ -0.99
CLK1-215ENST00000621181 NIPA1Q7RTP0 329 aa8.86□□□□□ -0.99
CLK1-215ENST00000621181 SGMS1Q86VZ5 419 aa8.86□□□□□ -0.99
CLK1-215ENST00000621181 SCLT1Q96NL6 688 aa8.86□□□□□ -0.99
CLK1-215ENST00000621181 ZNF577Q9BSK1 485 aa8.86□□□□□ -0.99
CLK1-215ENST00000621181 GLT8D2Q9H1C3 349 aa8.86□□□□□ -0.99
CLK1-215ENST00000621181 ADAM7Q9H2U9 754 aa8.86□□□□□ -0.99
CLK1-215ENST00000621181 MFSD1Q9H3U5 465 aa8.86□□□□□ -0.99
CLK1-215ENST00000621181 V9GY48 417 aaPredicted RBP8.86□□□□□ -0.99
CLK1-215ENST00000621181 C2orf71A6NGG8 1288 aa8.85□□□□□ -0.99
CLK1-215ENST00000621181 C2CD4DB7Z1M9 353 aa8.85□□□□□ -0.99
CLK1-215ENST00000621181 hCG_1984214I3L0E3 225 aa8.85□□□□□ -0.99
CLK1-215ENST00000621181 MAGEB2O15479 319 aa8.85□□□□□ -0.99
CLK1-215ENST00000621181 ATP4AP20648 1035 aa8.85□□□□□ -0.99
CLK1-215ENST00000621181 DSC3Q14574 896 aa8.85□□□□□ -0.99
CLK1-215ENST00000621181 RTN1Q16799 776 aa8.85□□□□□ -0.99
CLK1-215ENST00000621181 ECHDC2Q86YB7 292 aa8.85□□□□□ -0.99
CLK1-215ENST00000621181 SMAP1Q8IYB5 467 aaPredicted RBP8.85□□□□□ -0.99
CLK1-215ENST00000621181 ZNF713Q8N859 430 aaPredicted RBP8.85□□□□□ -0.99
CLK1-215ENST00000621181 MRPL43Q8N983 215 aaKnown RBP8.85□□□□□ -0.99
CLK1-215ENST00000621181 UPF2Q9HAU5 1272 aaKnown RBP8.85□□□□□ -0.99
CLK1-215ENST00000621181 BARHL2Q9NY43 387 aa8.85□□□□□ -0.99
CLK1-215ENST00000621181 DHX15O43143 795 aaKnown RBP8.84□□□□□ -0.99
CLK1-215ENST00000621181 PSAPP07602 524 aa8.84□□□□□ -0.99
CLK1-215ENST00000621181 WEE2P0C1S8 567 aa8.84□□□□□ -0.99
CLK1-215ENST00000621181 EIF4BP23588 611 aaKnown RBP8.84□□□□□ -0.99
CLK1-215ENST00000621181 MTHFRP42898 656 aa8.84□□□□□ -0.99
CLK1-215ENST00000621181 RBM25P49756 843 aaKnown RBP8.84□□□□□ -0.99
CLK1-215ENST00000621181 CLK2P49760 499 aaKnown RBP8.84□□□□□ -0.99
CLK1-215ENST00000621181 METAP2P50579 478 aaKnown RBP eCLIP8.84□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms