RNA–Protein interactions for RNA: ENST00000594298.5

SHKBP1-203, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 716 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-203ENST00000594298 SCRN1Q12765 414 aa19.8■□□□□ 0.76
SHKBP1-203ENST00000594298 DUSP6Q16828 381 aa19.8■□□□□ 0.76
SHKBP1-203ENST00000594298 THNSL1Q8IYQ7 743 aa19.8■□□□□ 0.76
SHKBP1-203ENST00000594298 FAM177A1Q8N128 213 aaPredicted RBP19.8■□□□□ 0.76
SHKBP1-203ENST00000594298 TMEM117Q9H0C3 514 aa19.8■□□□□ 0.76
SHKBP1-203ENST00000594298 ADAMTS10Q9H324 1103 aa19.8■□□□□ 0.76
SHKBP1-203ENST00000594298 HCSTQ9UBK5 93 aa19.8■□□□□ 0.76
SHKBP1-203ENST00000594298 USP15Q9Y4E8 981 aaPredicted RBP19.8■□□□□ 0.76
SHKBP1-203ENST00000594298 HOXA2O43364 376 aa19.79■□□□□ 0.76
SHKBP1-203ENST00000594298 ATF7P17544 494 aaPredicted RBP19.79■□□□□ 0.76
SHKBP1-203ENST00000594298 TMOD1P28289 359 aa19.79■□□□□ 0.76
SHKBP1-203ENST00000594298 CLCN3P51790 818 aa19.79■□□□□ 0.76
SHKBP1-203ENST00000594298 ERVFC1P60507 584 aa19.79■□□□□ 0.76
SHKBP1-203ENST00000594298 TMEM184AQ6ZMB5 413 aa19.79■□□□□ 0.76
SHKBP1-203ENST00000594298 BMP8AQ7Z5Y6 402 aa19.79■□□□□ 0.76
SHKBP1-203ENST00000594298 VN1R2Q8NFZ6 395 aa19.79■□□□□ 0.76
SHKBP1-203ENST00000594298 FBXL18Q96ME1 805 aa19.79■□□□□ 0.76
SHKBP1-203ENST00000594298 MAP7D2Q96T17 732 aa19.79■□□□□ 0.76
SHKBP1-203ENST00000594298 PHF7Q9BWX1 381 aaPredicted RBP19.79■□□□□ 0.76
SHKBP1-203ENST00000594298 SAMM50Q9Y512 469 aa19.79■□□□□ 0.76
SHKBP1-203ENST00000594298 PER2O15055 1255 aa19.78■□□□□ 0.76
SHKBP1-203ENST00000594298 OATP04181 439 aa19.78■□□□□ 0.76
SHKBP1-203ENST00000594298 EIF4BP23588 611 aaKnown RBP19.78■□□□□ 0.76
SHKBP1-203ENST00000594298 NLRP11P59045 1033 aaKnown RBP19.78■□□□□ 0.76
SHKBP1-203ENST00000594298 KCNC3Q14003 757 aa19.78■□□□□ 0.76
SHKBP1-203ENST00000594298 EFCAB12Q6NXP0 572 aa19.78■□□□□ 0.76
SHKBP1-203ENST00000594298 TRMT1LQ7Z2T5 733 aaKnown RBP19.78■□□□□ 0.76
SHKBP1-203ENST00000594298 RASGRP4Q8TDF6 673 aa19.78■□□□□ 0.76
SHKBP1-203ENST00000594298 SUSD6Q92537 303 aa19.78■□□□□ 0.76
SHKBP1-203ENST00000594298 MRPS27Q92552 414 aaKnown RBP19.78■□□□□ 0.76
SHKBP1-203ENST00000594298 WASF1Q92558 559 aa19.78■□□□□ 0.76
SHKBP1-203ENST00000594298 CASD1Q96PB1 797 aa19.78■□□□□ 0.76
SHKBP1-203ENST00000594298 RIT2Q99578 217 aa19.78■□□□□ 0.76
SHKBP1-203ENST00000594298 NRBP2Q9NSY0 501 aa19.78■□□□□ 0.76
SHKBP1-203ENST00000594298 RNF19AQ9NV58 838 aa19.78■□□□□ 0.76
SHKBP1-203ENST00000594298 LIMCH1Q9UPQ0 1083 aa19.78■□□□□ 0.76
SHKBP1-203ENST00000594298 AKT3Q9Y243 479 aa19.78■□□□□ 0.76
SHKBP1-203ENST00000594298 LOXHD1Q8IVV2 1947 aa19.78■□□□□ 0.76
SHKBP1-203ENST00000594298 EDIL3O43854 480 aa19.77■□□□□ 0.76
SHKBP1-203ENST00000594298 ZNF862O60290 1169 aa19.77■□□□□ 0.76
SHKBP1-203ENST00000594298 XBP1P17861 261 aa19.77■□□□□ 0.76
SHKBP1-203ENST00000594298 USP11P51784 963 aa19.77■□□□□ 0.76
SHKBP1-203ENST00000594298 NLRP5P59047 1200 aa19.77■□□□□ 0.76
SHKBP1-203ENST00000594298 NHLH1Q02575 133 aa19.77■□□□□ 0.76
SHKBP1-203ENST00000594298 RABEP1Q15276 862 aa19.77■□□□□ 0.76
SHKBP1-203ENST00000594298 LRRC55Q6ZSA7 311 aa19.77■□□□□ 0.76
SHKBP1-203ENST00000594298 ALYREFQ86V81 257 aaKnown RBP19.77■□□□□ 0.76
SHKBP1-203ENST00000594298 LRRC43Q8N309 656 aa19.77■□□□□ 0.76
SHKBP1-203ENST00000594298 ZSCAN31Q96LW9 406 aaPredicted RBP19.77■□□□□ 0.76
SHKBP1-203ENST00000594298 DISC1Q9NRI5 854 aa19.77■□□□□ 0.76
SHKBP1-203ENST00000594298 PUF60Q9UHX1 559 aaKnown RBP19.77■□□□□ 0.76
SHKBP1-203ENST00000594298 FNDC1Q4ZHG4 1894 aaPredicted RBP19.77■□□□□ 0.76
SHKBP1-203ENST00000594298 PLXNA4Q9HCM2 1894 aa19.77■□□□□ 0.76
SHKBP1-203ENST00000594298 MSH4O15457 936 aa19.76■□□□□ 0.75
SHKBP1-203ENST00000594298 SRGAP2BP0DMP2 458 aa19.76■□□□□ 0.75
SHKBP1-203ENST00000594298 ZSCAN20P17040 1043 aaPredicted RBP19.76■□□□□ 0.75
SHKBP1-203ENST00000594298 SFNP31947 248 aa19.76■□□□□ 0.75
SHKBP1-203ENST00000594298 RBM10P98175 930 aaKnown RBP19.76■□□□□ 0.75
SHKBP1-203ENST00000594298 ME3Q16798 604 aa19.76■□□□□ 0.75
SHKBP1-203ENST00000594298 GALNT17Q6IS24 598 aa19.76■□□□□ 0.75
SHKBP1-203ENST00000594298 TRIM67Q6ZTA4 783 aa19.76■□□□□ 0.75
SHKBP1-203ENST00000594298 ECHDC2Q86YB7 292 aa19.76■□□□□ 0.75
SHKBP1-203ENST00000594298 LRRC71Q8N4P6 559 aa19.76■□□□□ 0.75
SHKBP1-203ENST00000594298 GTF3C6Q969F1 213 aa19.76■□□□□ 0.75
SHKBP1-203ENST00000594298 NGRNQ9NPE2 291 aaKnown RBP19.76■□□□□ 0.75
SHKBP1-203ENST00000594298 VPS54Q9P1Q0 977 aa19.76■□□□□ 0.75
SHKBP1-203ENST00000594298 STK36Q9NRP7 1315 aa19.76■□□□□ 0.75
SHKBP1-203ENST00000594298 MUC6Q6W4X9 2439 aa19.75■□□□□ 0.75
SHKBP1-203ENST00000594298 DARSP14868 501 aaKnown RBP19.75■□□□□ 0.75
SHKBP1-203ENST00000594298 PPM1AP35813 382 aa19.75■□□□□ 0.75
SHKBP1-203ENST00000594298 GPC3P51654 580 aa19.75■□□□□ 0.75
SHKBP1-203ENST00000594298 JAK3P52333 1124 aa19.75■□□□□ 0.75
SHKBP1-203ENST00000594298 ZXDAP98168 799 aa19.75■□□□□ 0.75
SHKBP1-203ENST00000594298 PRKCEQ02156 737 aa19.75■□□□□ 0.75
SHKBP1-203ENST00000594298 KCNT2Q6UVM3 1135 aa19.75■□□□□ 0.75
SHKBP1-203ENST00000594298 ABI1Q8IZP0 508 aa19.75■□□□□ 0.75
SHKBP1-203ENST00000594298 SLC5A5Q92911 643 aa19.75■□□□□ 0.75
SHKBP1-203ENST00000594298 ZNF558Q96NG5 402 aa19.75■□□□□ 0.75
SHKBP1-203ENST00000594298 KIF2CQ99661 725 aa19.75■□□□□ 0.75
SHKBP1-203ENST00000594298 TCF25Q9BQ70 676 aa19.75■□□□□ 0.75
SHKBP1-203ENST00000594298 S1PR5Q9H228 398 aa19.75■□□□□ 0.75
SHKBP1-203ENST00000594298 C5orf42Q9H799 3197 aa19.75■□□□□ 0.75
SHKBP1-203ENST00000594298 A0A0U1RQF3 1178 aa19.74■□□□□ 0.75
SHKBP1-203ENST00000594298 TMEM221A6NGB7 291 aa19.74■□□□□ 0.75
SHKBP1-203ENST00000594298 M0R296 226 aa19.74■□□□□ 0.75
SHKBP1-203ENST00000594298 ST18O60284 1047 aa19.74■□□□□ 0.75
SHKBP1-203ENST00000594298 GAS7O60861 476 aa19.74■□□□□ 0.75
SHKBP1-203ENST00000594298 KRT17Q04695 432 aa19.74■□□□□ 0.75
SHKBP1-203ENST00000594298 TARBP2Q15633 366 aaKnown RBP19.74■□□□□ 0.75
SHKBP1-203ENST00000594298 UGCGQ16739 394 aa19.74■□□□□ 0.75
SHKBP1-203ENST00000594298 PLPP4Q5VZY2 271 aa19.74■□□□□ 0.75
SHKBP1-203ENST00000594298 ANKRD54Q6NXT1 300 aa19.74■□□□□ 0.75
SHKBP1-203ENST00000594298 NECAB1Q8N987 351 aa19.74■□□□□ 0.75
SHKBP1-203ENST00000594298 RDM1Q8NG50 284 aa19.74■□□□□ 0.75
SHKBP1-203ENST00000594298 EOMESO95936 686 aa19.73■□□□□ 0.75
SHKBP1-203ENST00000594298 MRE11P49959 708 aa19.73■□□□□ 0.75
SHKBP1-203ENST00000594298 LRCH2Q5VUJ6 765 aa19.73■□□□□ 0.75
SHKBP1-203ENST00000594298 ZNF598Q86UK7 904 aaKnown RBP19.73■□□□□ 0.75
SHKBP1-203ENST00000594298 RPGRIP1Q96KN7 1286 aa19.73■□□□□ 0.75
SHKBP1-203ENST00000594298 TEKT3Q9BXF9 490 aa19.73■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms