RNA–Protein interactions for RNA: ENST00000580540.1

SREBF1-219, Transcript of sterol regulatory element binding transcription factor 1, humanhuman

TSL 4

Gene SREBF1, Length 540 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREBF1-219ENST00000580540 SLC7A3Q8WY07 619 aa18.6■□□□□ 0.57
SREBF1-219ENST00000580540 SAMD11Q96NU1 681 aa18.6■□□□□ 0.57
SREBF1-219ENST00000580540 GCOM2Q9BZD3 368 aaPredicted RBP18.6■□□□□ 0.57
SREBF1-219ENST00000580540 ADGRA3Q8IWK6 1321 aa18.59■□□□□ 0.57
SREBF1-219ENST00000580540 A0A087WZ62 844 aa18.59■□□□□ 0.57
SREBF1-219ENST00000580540 IGKV6-21A0A0C4DH24 114 aa18.59■□□□□ 0.57
SREBF1-219ENST00000580540 POTEMA6NI47 508 aa18.59■□□□□ 0.57
SREBF1-219ENST00000580540 DGKIO75912 1065 aa18.59■□□□□ 0.57
SREBF1-219ENST00000580540 ZSCAN20P17040 1043 aaPredicted RBP18.59■□□□□ 0.57
SREBF1-219ENST00000580540 GJB2P29033 226 aa18.59■□□□□ 0.57
SREBF1-219ENST00000580540 CTNNB1P35222 781 aa18.59■□□□□ 0.57
SREBF1-219ENST00000580540 TECP42680 631 aa18.59■□□□□ 0.57
SREBF1-219ENST00000580540 SARSP49591 514 aaKnown RBP18.59■□□□□ 0.57
SREBF1-219ENST00000580540 GATMP50440 423 aa18.59■□□□□ 0.57
SREBF1-219ENST00000580540 KSR1Q8IVT5 923 aa18.59■□□□□ 0.57
SREBF1-219ENST00000580540 TMEM143Q96AN5 459 aa18.59■□□□□ 0.57
SREBF1-219ENST00000580540 NLRP4Q96MN2 994 aa18.59■□□□□ 0.57
SREBF1-219ENST00000580540 CCDC43Q96MW1 224 aaKnown RBP18.59■□□□□ 0.57
SREBF1-219ENST00000580540 FDXACB1Q9BRP7 624 aaPredicted RBP18.59■□□□□ 0.57
SREBF1-219ENST00000580540 RGS18Q9NS28 235 aa18.59■□□□□ 0.57
SREBF1-219ENST00000580540 C1orf112Q9NSG2 853 aa18.59■□□□□ 0.57
SREBF1-219ENST00000580540 SMC3Q9UQE7 1217 aa18.59■□□□□ 0.57
SREBF1-219ENST00000580540 EYSQ5T1H1 3165 aa18.58■□□□□ 0.57
SREBF1-219ENST00000580540 A0A087WWV3 80 aa18.58■□□□□ 0.56
SREBF1-219ENST00000580540 H3BQV1 296 aa18.58■□□□□ 0.56
SREBF1-219ENST00000580540 OR52Z1P0C646 297 aa18.58■□□□□ 0.56
SREBF1-219ENST00000580540 DARSP14868 501 aaKnown RBP18.58■□□□□ 0.56
SREBF1-219ENST00000580540 POU3F3P20264 500 aaPredicted RBP18.58■□□□□ 0.56
SREBF1-219ENST00000580540 CDC42EP1Q00587 391 aa18.58■□□□□ 0.56
SREBF1-219ENST00000580540 GPM6BQ13491 265 aa18.58■□□□□ 0.56
SREBF1-219ENST00000580540 NBR1Q14596 966 aa18.58■□□□□ 0.56
SREBF1-219ENST00000580540 SLC24A5Q71RS6 500 aa18.58■□□□□ 0.56
SREBF1-219ENST00000580540 EXOC8Q8IYI6 725 aa18.58■□□□□ 0.56
SREBF1-219ENST00000580540 BACH2Q9BYV9 841 aa18.58■□□□□ 0.56
SREBF1-219ENST00000580540 GTF3C3Q9Y5Q9 886 aa18.58■□□□□ 0.56
SREBF1-219ENST00000580540 RFC5P40937 340 aa18.57■□□□□ 0.56
SREBF1-219ENST00000580540 TRAPPC10P48553 1259 aa18.57■□□□□ 0.56
SREBF1-219ENST00000580540 NEK9Q8TD19 979 aa18.57■□□□□ 0.56
SREBF1-219ENST00000580540 ZNF689Q96CS4 500 aaPredicted RBP18.57■□□□□ 0.56
SREBF1-219ENST00000580540 HSD17B14Q9BPX1 270 aa18.57■□□□□ 0.56
SREBF1-219ENST00000580540 RC3H2Q9HBD1 1191 aaKnown RBP18.57■□□□□ 0.56
SREBF1-219ENST00000580540 RNF216Q9NWF9 866 aaPredicted RBP18.57■□□□□ 0.56
SREBF1-219ENST00000580540 PPME1Q9Y570 386 aa18.57■□□□□ 0.56
SREBF1-219ENST00000580540 C9IYK1 514 aa18.56■□□□□ 0.56
SREBF1-219ENST00000580540 SRGAP2CP0DJJ0 459 aa18.56■□□□□ 0.56
SREBF1-219ENST00000580540 U2AF2P26368 475 aaKnown RBP eCLIP18.56■□□□□ 0.56
SREBF1-219ENST00000580540 ORC2Q13416 577 aaPredicted RBP18.56■□□□□ 0.56
SREBF1-219ENST00000580540 DSC3Q14574 896 aa18.56■□□□□ 0.56
SREBF1-219ENST00000580540 EMC2Q15006 297 aa18.56■□□□□ 0.56
SREBF1-219ENST00000580540 FAM102BQ5T8I3 360 aa18.56■□□□□ 0.56
SREBF1-219ENST00000580540 FAM43BQ6ZT52 329 aaPredicted RBP18.56■□□□□ 0.56
SREBF1-219ENST00000580540 CMTR2Q8IYT2 770 aaKnown RBP18.56■□□□□ 0.56
SREBF1-219ENST00000580540 CRIPAKQ8N1N5 446 aa18.56■□□□□ 0.56
SREBF1-219ENST00000580540 RNF169Q8NCN4 708 aa18.56■□□□□ 0.56
SREBF1-219ENST00000580540 PIGOQ8TEQ8 1089 aa18.56■□□□□ 0.56
SREBF1-219ENST00000580540 PRPF31Q8WWY3 499 aaKnown RBP18.56■□□□□ 0.56
SREBF1-219ENST00000580540 PSPC1Q8WXF1 523 aaKnown RBP18.56■□□□□ 0.56
SREBF1-219ENST00000580540 DHX33Q9H6R0 707 aaKnown RBP18.56■□□□□ 0.56
SREBF1-219ENST00000580540 ATP6V0A4Q9HBG4 840 aa18.56■□□□□ 0.56
SREBF1-219ENST00000580540 LMCD1Q9NZU5 365 aa18.56■□□□□ 0.56
SREBF1-219ENST00000580540 THEGQ9P2T0 379 aa18.56■□□□□ 0.56
SREBF1-219ENST00000580540 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.56■□□□□ 0.56
SREBF1-219ENST00000580540 COL4A3BPQ9Y5P4 624 aa18.56■□□□□ 0.56
SREBF1-219ENST00000580540 MRPL42Q9Y6G3 142 aaKnown RBP18.56■□□□□ 0.56
SREBF1-219ENST00000580540 PRUNE2Q8WUY3 3088 aa18.55■□□□□ 0.56
SREBF1-219ENST00000580540 COL4A4P53420 1690 aaPredicted RBP18.55■□□□□ 0.56
SREBF1-219ENST00000580540 TBKBP1A7MCY6 615 aa18.55■□□□□ 0.56
SREBF1-219ENST00000580540 H3BNC9 293 aa18.55■□□□□ 0.56
SREBF1-219ENST00000580540 DLL1O00548 723 aa18.55■□□□□ 0.56
SREBF1-219ENST00000580540 BMPR1AP36894 532 aa18.55■□□□□ 0.56
SREBF1-219ENST00000580540 SPOUT1Q5T280 376 aaKnown RBP18.55■□□□□ 0.56
SREBF1-219ENST00000580540 ZNF410Q86VK4 478 aa18.55■□□□□ 0.56
SREBF1-219ENST00000580540 ERMNQ8TAM6 284 aa18.55■□□□□ 0.56
SREBF1-219ENST00000580540 TCP11Q8WWU5 503 aa18.55■□□□□ 0.56
SREBF1-219ENST00000580540 MTRQ99707 1265 aa18.55■□□□□ 0.56
SREBF1-219ENST00000580540 INO80BQ9C086 356 aaPredicted RBP18.55■□□□□ 0.56
SREBF1-219ENST00000580540 ANKEF1Q9NU02 776 aa18.55■□□□□ 0.56
SREBF1-219ENST00000580540 RWDD3Q9Y3V2 267 aa18.55■□□□□ 0.56
SREBF1-219ENST00000580540 PCDHB6Q9Y5E3 794 aa18.55■□□□□ 0.56
SREBF1-219ENST00000580540 CSPG5O95196 566 aa18.54■□□□□ 0.56
SREBF1-219ENST00000580540 LYPLA2O95372 231 aa18.54■□□□□ 0.56
SREBF1-219ENST00000580540 FGFR1P11362 822 aa18.54■□□□□ 0.56
SREBF1-219ENST00000580540 SFPQP23246 707 aaKnown RBP eCLIP18.54■□□□□ 0.56
SREBF1-219ENST00000580540 TOB1P50616 345 aaPredicted RBP18.54■□□□□ 0.56
SREBF1-219ENST00000580540 LAMTOR4Q0VGL1 99 aa18.54■□□□□ 0.56
SREBF1-219ENST00000580540 PTPROQ16827 1216 aa18.54■□□□□ 0.56
SREBF1-219ENST00000580540 CATSPER4Q7RTX7 472 aa18.54■□□□□ 0.56
SREBF1-219ENST00000580540 TMEM161AQ9NX61 479 aa18.54■□□□□ 0.56
SREBF1-219ENST00000580540 MED24O75448 989 aa18.53■□□□□ 0.56
SREBF1-219ENST00000580540 RB1P06400 928 aa18.53■□□□□ 0.56
SREBF1-219ENST00000580540 SPATA31C1P0DKV0 1188 aa18.53■□□□□ 0.56
SREBF1-219ENST00000580540 FAM189BP81408 668 aa18.53■□□□□ 0.56
SREBF1-219ENST00000580540 PTGDRQ13258 359 aa18.53■□□□□ 0.56
SREBF1-219ENST00000580540 LARP1BQ659C4 914 aaKnown RBP18.53■□□□□ 0.56
SREBF1-219ENST00000580540 CATSPER3Q86XQ3 398 aa18.53■□□□□ 0.56
SREBF1-219ENST00000580540 CLP1Q92989 425 aaKnown RBP18.53■□□□□ 0.56
SREBF1-219ENST00000580540 C11orf84Q9BUA3 381 aaPredicted RBP18.53■□□□□ 0.56
SREBF1-219ENST00000580540 TUFT1Q9NNX1 390 aa18.53■□□□□ 0.56
SREBF1-219ENST00000580540 DACT1Q9NYF0 836 aa18.53■□□□□ 0.56
SREBF1-219ENST00000580540 PIN4Q9Y237 131 aaKnown RBP18.53■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms