RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 MYMKA6NI61 221 aa9.51□□□□□ -0.89
LIMCH1-209ENST00000509277 UNCXA6NJT0 531 aa9.51□□□□□ -0.89
LIMCH1-209ENST00000509277 EFCAB8A8MWE9 144 aa9.51□□□□□ -0.89
LIMCH1-209ENST00000509277 GPR25O00155 361 aa9.51□□□□□ -0.89
LIMCH1-209ENST00000509277 CDC25CP30307 473 aa9.51□□□□□ -0.89
LIMCH1-209ENST00000509277 QARSP47897 775 aaKnown RBP9.51□□□□□ -0.89
LIMCH1-209ENST00000509277 AMPD3Q01432 767 aa9.51□□□□□ -0.89
LIMCH1-209ENST00000509277 OTUD6BQ8N6M0 293 aa9.51□□□□□ -0.89
LIMCH1-209ENST00000509277 ZNF579Q8NAF0 562 aaKnown RBP9.51□□□□□ -0.89
LIMCH1-209ENST00000509277 CCDC150Q8NCX0 1101 aa9.51□□□□□ -0.89
LIMCH1-209ENST00000509277 AFAP1L1Q8TED9 768 aa9.51□□□□□ -0.89
LIMCH1-209ENST00000509277 SLC5A5Q92911 643 aa9.51□□□□□ -0.89
LIMCH1-209ENST00000509277 TBC1D31Q96DN5 1066 aa9.51□□□□□ -0.89
LIMCH1-209ENST00000509277 INPP4AQ96PE3 977 aaPredicted RBP9.51□□□□□ -0.89
LIMCH1-209ENST00000509277 IWS1Q96ST2 819 aa9.51□□□□□ -0.89
LIMCH1-209ENST00000509277 NT5C3AQ9H0P0 336 aa9.51□□□□□ -0.89
LIMCH1-209ENST00000509277 ZNF302Q9NR11 478 aa9.51□□□□□ -0.89
LIMCH1-209ENST00000509277 MORF4L1Q9UBU8 362 aa9.51□□□□□ -0.89
LIMCH1-209ENST00000509277 RNF40O75150 1001 aa9.51□□□□□ -0.89
LIMCH1-209ENST00000509277 SLITRK3O94933 977 aa9.51□□□□□ -0.89
LIMCH1-209ENST00000509277 RPN1P04843 607 aaKnown RBP9.51□□□□□ -0.89
LIMCH1-209ENST00000509277 PSAPP07602 524 aa9.51□□□□□ -0.89
LIMCH1-209ENST00000509277 PAX7P23759 505 aa9.51□□□□□ -0.89
LIMCH1-209ENST00000509277 USP8P40818 1118 aa9.51□□□□□ -0.89
LIMCH1-209ENST00000509277 TMEM62Q0P6H9 643 aa9.51□□□□□ -0.89
LIMCH1-209ENST00000509277 MIS18BP1Q6P0N0 1132 aa9.51□□□□□ -0.89
LIMCH1-209ENST00000509277 LRRC71Q8N4P6 559 aa9.51□□□□□ -0.89
LIMCH1-209ENST00000509277 GPRASP2Q96D09 838 aa9.51□□□□□ -0.89
LIMCH1-209ENST00000509277 VAV3Q9UKW4 847 aa9.51□□□□□ -0.89
LIMCH1-209ENST00000509277 HPSEQ9Y251 543 aa9.51□□□□□ -0.89
LIMCH1-209ENST00000509277 NDUFAB1O14561 156 aa9.5□□□□□ -0.89
LIMCH1-209ENST00000509277 CTAGE5O15320 804 aa9.5□□□□□ -0.89
LIMCH1-209ENST00000509277 KIF5CO60282 957 aa9.5□□□□□ -0.89
LIMCH1-209ENST00000509277 TM4SF4P48230 202 aa9.5□□□□□ -0.89
LIMCH1-209ENST00000509277 STAT5BP51692 787 aa9.5□□□□□ -0.89
LIMCH1-209ENST00000509277 C1QTNF8P60827 252 aa9.5□□□□□ -0.89
LIMCH1-209ENST00000509277 KRT76Q01546 638 aa9.5□□□□□ -0.89
LIMCH1-209ENST00000509277 PRKCEQ02156 737 aa9.5□□□□□ -0.89
LIMCH1-209ENST00000509277 NEDD9Q14511 834 aa9.5□□□□□ -0.89
LIMCH1-209ENST00000509277 NAALADL2Q58DX5 795 aa9.5□□□□□ -0.89
LIMCH1-209ENST00000509277 KANK3Q6NY19 840 aa9.5□□□□□ -0.89
LIMCH1-209ENST00000509277 PIK3R5Q8WYR1 880 aa9.5□□□□□ -0.89
LIMCH1-209ENST00000509277 RAD54LQ92698 747 aa9.5□□□□□ -0.89
LIMCH1-209ENST00000509277 TMEM143Q96AN5 459 aa9.5□□□□□ -0.89
LIMCH1-209ENST00000509277 KIFC3Q9BVG8 833 aa9.5□□□□□ -0.89
LIMCH1-209ENST00000509277 RUSC1Q9BVN2 902 aa9.5□□□□□ -0.89
LIMCH1-209ENST00000509277 FAM49AQ9H0Q0 323 aaPredicted RBP9.5□□□□□ -0.89
LIMCH1-209ENST00000509277 AP5M1Q9H0R1 490 aa9.5□□□□□ -0.89
LIMCH1-209ENST00000509277 MMRN2Q9H8L6 949 aa9.5□□□□□ -0.89
LIMCH1-209ENST00000509277 MAN1B1Q9UKM7 699 aa9.5□□□□□ -0.89
LIMCH1-209ENST00000509277 KDM3AQ9Y4C1 1321 aa9.5□□□□□ -0.89
LIMCH1-209ENST00000509277 CYP3A7-CYP3A51PA0A087WV96 503 aa9.5□□□□□ -0.89
LIMCH1-209ENST00000509277 SLC15A5A6NIM6 579 aa9.5□□□□□ -0.89
LIMCH1-209ENST00000509277 ADCY3O60266 1144 aa9.5□□□□□ -0.89
LIMCH1-209ENST00000509277 CSDE1O75534 798 aaKnown RBP9.5□□□□□ -0.89
LIMCH1-209ENST00000509277 GCNT3O95395 438 aa9.5□□□□□ -0.89
LIMCH1-209ENST00000509277 P4HBP07237 508 aaKnown RBP9.5□□□□□ -0.89
LIMCH1-209ENST00000509277 KCNA2P16389 499 aa9.5□□□□□ -0.89
LIMCH1-209ENST00000509277 CYP3A7P24462 503 aa9.5□□□□□ -0.89
LIMCH1-209ENST00000509277 YWHABP31946 246 aaKnown RBP9.5□□□□□ -0.89
LIMCH1-209ENST00000509277 GCKP35557 465 aa9.5□□□□□ -0.89
LIMCH1-209ENST00000509277 POLGP54098 1239 aaPredicted RBP9.5□□□□□ -0.89
LIMCH1-209ENST00000509277 CAP1Q01518 475 aa9.5□□□□□ -0.89
LIMCH1-209ENST00000509277 PDIA5Q14554 519 aa9.5□□□□□ -0.89
LIMCH1-209ENST00000509277 GNASQ5JWF2 1037 aa9.5□□□□□ -0.89
LIMCH1-209ENST00000509277 TOGARAM2Q6ZUX3 1019 aa9.5□□□□□ -0.89
LIMCH1-209ENST00000509277 GLIS3Q8NEA6 775 aa9.5□□□□□ -0.89
LIMCH1-209ENST00000509277 SHCBP1Q8NEM2 672 aa9.5□□□□□ -0.89
LIMCH1-209ENST00000509277 MRFAP1L1Q96HT8 127 aa9.5□□□□□ -0.89
LIMCH1-209ENST00000509277 BAG1Q99933 345 aaPredicted RBP9.5□□□□□ -0.89
LIMCH1-209ENST00000509277 CCSER1Q9C0I3 900 aa9.5□□□□□ -0.89
LIMCH1-209ENST00000509277 MRPL44Q9H9J2 332 aaKnown RBP9.5□□□□□ -0.89
LIMCH1-209ENST00000509277 PANK4Q9NVE7 773 aa9.5□□□□□ -0.89
LIMCH1-209ENST00000509277 PCDH10Q9P2E7 1040 aa9.5□□□□□ -0.89
LIMCH1-209ENST00000509277 PPP2R2CQ9Y2T4 447 aa9.5□□□□□ -0.89
LIMCH1-209ENST00000509277 SNAI1O95863 264 aaPredicted RBP9.5□□□□□ -0.89
LIMCH1-209ENST00000509277 PRKAR2AP13861 404 aaKnown RBP9.5□□□□□ -0.89
LIMCH1-209ENST00000509277 EPHA7Q15375 998 aa9.5□□□□□ -0.89
LIMCH1-209ENST00000509277 MFSD14CQ5VZR4 134 aa9.5□□□□□ -0.89
LIMCH1-209ENST00000509277 PADI6Q6TGC4 694 aa9.5□□□□□ -0.89
LIMCH1-209ENST00000509277 GPR161Q8N6U8 529 aaKnown RBP9.5□□□□□ -0.89
LIMCH1-209ENST00000509277 CRYGNQ8WXF5 182 aa9.5□□□□□ -0.89
LIMCH1-209ENST00000509277 FGD4Q96M96 766 aa9.5□□□□□ -0.89
LIMCH1-209ENST00000509277 RIT2Q99578 217 aa9.5□□□□□ -0.89
LIMCH1-209ENST00000509277 MTRQ99707 1265 aa9.5□□□□□ -0.89
LIMCH1-209ENST00000509277 BLOC1S4Q9NUP1 217 aa9.5□□□□□ -0.89
LIMCH1-209ENST00000509277 MAP3K20Q9NYL2 800 aaKnown RBP9.5□□□□□ -0.89
LIMCH1-209ENST00000509277 GUCA1BQ9UMX6 200 aa9.5□□□□□ -0.89
LIMCH1-209ENST00000509277 DOCK5Q9H7D0 1870 aa9.49□□□□□ -0.89
LIMCH1-209ENST00000509277 A0A0U1RQJ8 604 aa9.49□□□□□ -0.89
LIMCH1-209ENST00000509277 TRIM49BA6NDI0 452 aa9.49□□□□□ -0.89
LIMCH1-209ENST00000509277 TBX3O15119 743 aa9.49□□□□□ -0.89
LIMCH1-209ENST00000509277 SPATA31C1P0DKV0 1188 aa9.49□□□□□ -0.89
LIMCH1-209ENST00000509277 RPA1P27694 616 aa9.49□□□□□ -0.89
LIMCH1-209ENST00000509277 GRB14Q14449 540 aa9.49□□□□□ -0.89
LIMCH1-209ENST00000509277 ZNF792Q3KQV3 632 aa9.49□□□□□ -0.89
LIMCH1-209ENST00000509277 SYCP3Q8IZU3 236 aa9.49□□□□□ -0.89
LIMCH1-209ENST00000509277 RDH13Q8NBN7 331 aa9.49□□□□□ -0.89
LIMCH1-209ENST00000509277 ATP6V0A1Q93050 837 aa9.49□□□□□ -0.89
LIMCH1-209ENST00000509277 NACC1Q96RE7 527 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms