RNA–Protein interactions for RNA: ENST00000414419.6

RFFL-204, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 559 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-204ENST00000414419 MTMR9Q96QG7 549 aa12.53□□□□□ -0.4
RFFL-204ENST00000414419 C17orf80Q9BSJ5 609 aa12.53□□□□□ -0.4
RFFL-204ENST00000414419 INO80BQ9C086 356 aaPredicted RBP12.53□□□□□ -0.4
RFFL-204ENST00000414419 ADAMTS10Q9H324 1103 aa12.53□□□□□ -0.4
RFFL-204ENST00000414419 TMX1Q9H3N1 280 aa12.53□□□□□ -0.4
RFFL-204ENST00000414419 LMCD1Q9NZU5 365 aa12.53□□□□□ -0.4
RFFL-204ENST00000414419 SMC3Q9UQE7 1217 aa12.53□□□□□ -0.4
RFFL-204ENST00000414419 RWDD3Q9Y3V2 267 aa12.53□□□□□ -0.4
RFFL-204ENST00000414419 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.53□□□□□ -0.4
RFFL-204ENST00000414419 MTCH2Q9Y6C9 303 aa12.53□□□□□ -0.4
RFFL-204ENST00000414419 COL4A4P53420 1690 aaPredicted RBP12.53□□□□□ -0.4
RFFL-204ENST00000414419 ADGRA3Q8IWK6 1321 aa12.53□□□□□ -0.4
RFFL-204ENST00000414419 DGKIO75912 1065 aa12.52□□□□□ -0.41
RFFL-204ENST00000414419 SLITRK3O94933 977 aa12.52□□□□□ -0.41
RFFL-204ENST00000414419 CD2BP2O95400 341 aaKnown RBP12.52□□□□□ -0.41
RFFL-204ENST00000414419 OR52Z1P0C646 297 aa12.52□□□□□ -0.41
RFFL-204ENST00000414419 DARSP14868 501 aaKnown RBP12.52□□□□□ -0.41
RFFL-204ENST00000414419 U2AF2P26368 475 aaKnown RBP eCLIP12.52□□□□□ -0.411e-6■■□□□ 13.4
RFFL-204ENST00000414419 GJB2P29033 226 aa12.52□□□□□ -0.41
RFFL-204ENST00000414419 TECP42680 631 aa12.52□□□□□ -0.41
RFFL-204ENST00000414419 SARSP49591 514 aaKnown RBP12.52□□□□□ -0.41
RFFL-204ENST00000414419 DRP2Q13474 957 aa12.52□□□□□ -0.41
RFFL-204ENST00000414419 EPC2Q52LR7 807 aa12.52□□□□□ -0.41
RFFL-204ENST00000414419 SLC24A5Q71RS6 500 aa12.52□□□□□ -0.41
RFFL-204ENST00000414419 TMEM192Q8IY95 271 aa12.52□□□□□ -0.41
RFFL-204ENST00000414419 ERMNQ8TAM6 284 aa12.52□□□□□ -0.41
RFFL-204ENST00000414419 TCP11Q8WWU5 503 aa12.52□□□□□ -0.41
RFFL-204ENST00000414419 CEP89Q96ST8 783 aa12.52□□□□□ -0.41
RFFL-204ENST00000414419 BACH2Q9BYV9 841 aa12.52□□□□□ -0.41
RFFL-204ENST00000414419 TMEM60Q9H2L4 133 aa12.52□□□□□ -0.41
RFFL-204ENST00000414419 RGS18Q9NS28 235 aa12.52□□□□□ -0.41
RFFL-204ENST00000414419 WRAP73Q9P2S5 460 aaPredicted RBP12.52□□□□□ -0.41
RFFL-204ENST00000414419 FNDC1Q4ZHG4 1894 aaPredicted RBP12.52□□□□□ -0.41
RFFL-204ENST00000414419 PRUNE2Q8WUY3 3088 aa12.52□□□□□ -0.41
RFFL-204ENST00000414419 EYSQ5T1H1 3165 aa12.52□□□□□ -0.41
RFFL-204ENST00000414419 A0A087WZ62 844 aa12.51□□□□□ -0.41
RFFL-204ENST00000414419 POTEMA6NI47 508 aa12.51□□□□□ -0.41
RFFL-204ENST00000414419 GAS2O43903 313 aaKnown RBP12.51□□□□□ -0.41
RFFL-204ENST00000414419 MGEA5O60502 916 aa12.51□□□□□ -0.41
RFFL-204ENST00000414419 SFPQP23246 707 aaKnown RBP eCLIP12.51□□□□□ -0.41
RFFL-204ENST00000414419 CTNNB1P35222 781 aa12.51□□□□□ -0.41
RFFL-204ENST00000414419 GPM6BQ13491 265 aa12.51□□□□□ -0.41
RFFL-204ENST00000414419 PTPROQ16827 1216 aa12.51□□□□□ -0.41
RFFL-204ENST00000414419 PAN2Q504Q3 1202 aaKnown RBP12.51□□□□□ -0.41
RFFL-204ENST00000414419 ZNF410Q86VK4 478 aa12.51□□□□□ -0.41
RFFL-204ENST00000414419 CMTR2Q8IYT2 770 aaKnown RBP12.51□□□□□ -0.41
RFFL-204ENST00000414419 PSPC1Q8WXF1 523 aaKnown RBP12.51□□□□□ -0.41
RFFL-204ENST00000414419 ZNF689Q96CS4 500 aaPredicted RBP12.51□□□□□ -0.41
RFFL-204ENST00000414419 NLRP4Q96MN2 994 aa12.51□□□□□ -0.41
RFFL-204ENST00000414419 MTRQ99707 1265 aa12.51□□□□□ -0.41
RFFL-204ENST00000414419 HSD17B14Q9BPX1 270 aa12.51□□□□□ -0.41
RFFL-204ENST00000414419 FDXACB1Q9BRP7 624 aaPredicted RBP12.51□□□□□ -0.41
RFFL-204ENST00000414419 DHX33Q9H6R0 707 aaKnown RBP12.51□□□□□ -0.41
RFFL-204ENST00000414419 ATP6V0A4Q9HBG4 840 aa12.51□□□□□ -0.41
RFFL-204ENST00000414419 BMP2KQ9NSY1 1161 aaPredicted RBP12.51□□□□□ -0.41
RFFL-204ENST00000414419 COL4A3BPQ9Y5P4 624 aa12.51□□□□□ -0.41
RFFL-204ENST00000414419 GTF3C3Q9Y5Q9 886 aa12.51□□□□□ -0.41
RFFL-204ENST00000414419 COL4A6Q14031 1691 aa12.51□□□□□ -0.41
RFFL-204ENST00000414419 C9IYK1 514 aa12.5□□□□□ -0.41
RFFL-204ENST00000414419 H3BNC9 293 aa12.5□□□□□ -0.41
RFFL-204ENST00000414419 ZBTB39O15060 712 aa12.5□□□□□ -0.41
RFFL-204ENST00000414419 ASAP2O43150 1006 aa12.5□□□□□ -0.41
RFFL-204ENST00000414419 LPXNO60711 386 aa12.5□□□□□ -0.41
RFFL-204ENST00000414419 LYPLA2O95372 231 aa12.5□□□□□ -0.41
RFFL-204ENST00000414419 RB1P06400 928 aa12.5□□□□□ -0.41
RFFL-204ENST00000414419 SRGAP2CP0DJJ0 459 aa12.5□□□□□ -0.41
RFFL-204ENST00000414419 FGFR4P22455 802 aa12.5□□□□□ -0.41
RFFL-204ENST00000414419 EMC2Q15006 297 aa12.5□□□□□ -0.41
RFFL-204ENST00000414419 SPOUT1Q5T280 376 aaKnown RBP12.5□□□□□ -0.41
RFFL-204ENST00000414419 LARP1BQ659C4 914 aaKnown RBP12.5□□□□□ -0.41
RFFL-204ENST00000414419 ZNF579Q8NAF0 562 aaKnown RBP12.5□□□□□ -0.41
RFFL-204ENST00000414419 TMEM143Q96AN5 459 aa12.5□□□□□ -0.41
RFFL-204ENST00000414419 C11orf84Q9BUA3 381 aaPredicted RBP12.5□□□□□ -0.41
RFFL-204ENST00000414419 RAB34Q9BZG1 259 aa12.5□□□□□ -0.41
RFFL-204ENST00000414419 TUFT1Q9NNX1 390 aa12.5□□□□□ -0.41
RFFL-204ENST00000414419 ANKEF1Q9NU02 776 aa12.5□□□□□ -0.41
RFFL-204ENST00000414419 TMEM161AQ9NX61 479 aa12.5□□□□□ -0.41
RFFL-204ENST00000414419 DACT1Q9NYF0 836 aa12.5□□□□□ -0.41
RFFL-204ENST00000414419 KIAA1671Q9BY89 1806 aa12.49□□□□□ -0.41
RFFL-204ENST00000414419 HOXA2O43364 376 aa12.49□□□□□ -0.41
RFFL-204ENST00000414419 CSDE1O75534 798 aaKnown RBP12.49□□□□□ -0.41
RFFL-204ENST00000414419 DGAT1O75907 488 aa12.49□□□□□ -0.41
RFFL-204ENST00000414419 XRCC6P12956 609 aaKnown RBP eCLIP12.49□□□□□ -0.41
RFFL-204ENST00000414419 BMPR1AP36894 532 aa12.49□□□□□ -0.41
RFFL-204ENST00000414419 DSC3Q14574 896 aa12.49□□□□□ -0.41
RFFL-204ENST00000414419 MXD4Q14582 209 aaPredicted RBP12.49□□□□□ -0.41
RFFL-204ENST00000414419 RILPL1Q5EBL4 403 aa12.49□□□□□ -0.41
RFFL-204ENST00000414419 HAUS3Q68CZ6 603 aa12.49□□□□□ -0.41
RFFL-204ENST00000414419 CATSPER4Q7RTX7 472 aa12.49□□□□□ -0.41
RFFL-204ENST00000414419 KSR1Q8IVT5 923 aa12.49□□□□□ -0.41
RFFL-204ENST00000414419 ABI1Q8IZP0 508 aa12.49□□□□□ -0.41
RFFL-204ENST00000414419 CRIPAKQ8N1N5 446 aa12.49□□□□□ -0.41
RFFL-204ENST00000414419 PRPF31Q8WWY3 499 aaKnown RBP12.49□□□□□ -0.41
RFFL-204ENST00000414419 NACC1Q96RE7 527 aa12.49□□□□□ -0.41
RFFL-204ENST00000414419 ELAC1Q9H777 363 aaKnown RBP12.49□□□□□ -0.41
RFFL-204ENST00000414419 RC3H2Q9HBD1 1191 aaKnown RBP12.49□□□□□ -0.41
RFFL-204ENST00000414419 CHST12Q9NRB3 414 aa12.49□□□□□ -0.41
RFFL-204ENST00000414419 THEGQ9P2T0 379 aa12.49□□□□□ -0.41
RFFL-204ENST00000414419 MYO7AQ13402 2215 aa12.49□□□□□ -0.41
RFFL-204ENST00000414419 TBKBP1A7MCY6 615 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms