RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 MAPTP10636 758 aaKnown RBP29.55■■■□□ 2.32
MSX1-201ENST00000382723 IRX5P78411 483 aaPredicted RBP29.55■■■□□ 2.32
MSX1-201ENST00000382723 SPAG1Q07617 926 aa29.55■■■□□ 2.32
MSX1-201ENST00000382723 TRIM32Q13049 653 aa29.55■■■□□ 2.32
MSX1-201ENST00000382723 KRT31Q15323 416 aa29.55■■■□□ 2.32
MSX1-201ENST00000382723 KIFC3Q9BVG8 833 aa29.55■■■□□ 2.32
MSX1-201ENST00000382723 IKZF4Q9H2S9 585 aa29.55■■■□□ 2.32
MSX1-201ENST00000382723 SMTNP53814 917 aa29.54■■■□□ 2.32
MSX1-201ENST00000382723 APTXQ7Z2E3 356 aaKnown RBP29.54■■■□□ 2.32
MSX1-201ENST00000382723 HAUS6Q7Z4H7 955 aa29.54■■■□□ 2.32
MSX1-201ENST00000382723 ARHGAP30Q7Z6I6 1101 aaPredicted RBP29.54■■■□□ 2.32
MSX1-201ENST00000382723 ANKRD20A12PQ8NF67 263 aa29.54■■■□□ 2.32
MSX1-201ENST00000382723 STRA6Q9BX79 667 aa29.54■■■□□ 2.32
MSX1-201ENST00000382723 ZNF215Q9UL58 517 aaPredicted RBP29.54■■■□□ 2.32
MSX1-201ENST00000382723 UBE4BO95155 1302 aa29.53■■■□□ 2.32
MSX1-201ENST00000382723 H3BRB1 525 aa29.53■■■□□ 2.32
MSX1-201ENST00000382723 MAFO75444 373 aaPredicted RBP29.53■■■□□ 2.32
MSX1-201ENST00000382723 PTMAP06454 111 aaKnown RBP29.53■■■□□ 2.32
MSX1-201ENST00000382723 AKR1A1P14550 325 aa29.53■■■□□ 2.32
MSX1-201ENST00000382723 CDC25BP30305 580 aa29.53■■■□□ 2.32
MSX1-201ENST00000382723 FKBP3Q00688 224 aaKnown RBP29.53■■■□□ 2.32
MSX1-201ENST00000382723 FOXR2Q6PJQ5 311 aa29.53■■■□□ 2.32
MSX1-201ENST00000382723 IFT74Q96LB3 600 aa29.53■■■□□ 2.32
MSX1-201ENST00000382723 CNOT6LQ96LI5 555 aaKnown RBP29.53■■■□□ 2.32
MSX1-201ENST00000382723 AP5M1Q9H0R1 490 aa29.53■■■□□ 2.32
MSX1-201ENST00000382723 TUT1Q9H6E5 874 aaKnown RBP29.53■■■□□ 2.32
MSX1-201ENST00000382723 C17orf75Q9HAS0 396 aa29.53■■■□□ 2.32
MSX1-201ENST00000382723 KMT5AQ9NQR1 393 aa29.53■■■□□ 2.32
MSX1-201ENST00000382723 TAB2Q9NYJ8 693 aa29.53■■■□□ 2.32
MSX1-201ENST00000382723 SRRDQ9UH36 339 aa29.53■■■□□ 2.32
MSX1-201ENST00000382723 LIMA1Q9UHB6 759 aaKnown RBP29.53■■■□□ 2.32
MSX1-201ENST00000382723 PPME1Q9Y570 386 aa29.53■■■□□ 2.32
MSX1-201ENST00000382723 ZMYM2Q9UBW7 1377 aa29.53■■■□□ 2.32
MSX1-201ENST00000382723 A6NJR5 290 aa29.53■■■□□ 2.32
MSX1-201ENST00000382723 PPP1R37O75864 691 aa29.53■■■□□ 2.32
MSX1-201ENST00000382723 FGFR1OPO95684 399 aaKnown RBP29.53■■■□□ 2.32
MSX1-201ENST00000382723 HOXD8P13378 290 aaPredicted RBP29.53■■■□□ 2.32
MSX1-201ENST00000382723 CYBAP13498 195 aa29.53■■■□□ 2.32
MSX1-201ENST00000382723 ELNP15502 786 aa29.53■■■□□ 2.32
MSX1-201ENST00000382723 HOXD10P28358 340 aa29.53■■■□□ 2.32
MSX1-201ENST00000382723 NCKAP1LP55160 1127 aa29.53■■■□□ 2.32
MSX1-201ENST00000382723 IGBP1P78318 339 aa29.53■■■□□ 2.32
MSX1-201ENST00000382723 LRRC55Q6ZSA7 311 aa29.53■■■□□ 2.32
MSX1-201ENST00000382723 FAM114A1Q8IWE2 563 aa29.53■■■□□ 2.32
MSX1-201ENST00000382723 TYW1Q9NV66 732 aaKnown RBP29.53■■■□□ 2.32
MSX1-201ENST00000382723 PDXKO00764 312 aa29.52■■■□□ 2.32
MSX1-201ENST00000382723 CALUO43852 315 aaPredicted RBP29.52■■■□□ 2.32
MSX1-201ENST00000382723 EEF1GP26641 437 aaKnown RBP29.52■■■□□ 2.32
MSX1-201ENST00000382723 CNGA1P29973 690 aa29.52■■■□□ 2.32
MSX1-201ENST00000382723 PTPN21Q16825 1174 aa29.52■■■□□ 2.32
MSX1-201ENST00000382723 PPP4R3CPQ6ZMV5 832 aa29.52■■■□□ 2.32
MSX1-201ENST00000382723 CTAGE1Q96RT6 745 aa29.52■■■□□ 2.32
MSX1-201ENST00000382723 SUGCTQ9HAC7 445 aa29.52■■■□□ 2.32
MSX1-201ENST00000382723 INTS13Q9NVM9 706 aa29.52■■■□□ 2.32
MSX1-201ENST00000382723 NRBP1Q9UHY1 535 aa29.52■■■□□ 2.32
MSX1-201ENST00000382723 TRAF3IP3Q9Y228 551 aa29.52■■■□□ 2.32
MSX1-201ENST00000382723 INSRRP14616 1297 aa29.51■■■□□ 2.32
MSX1-201ENST00000382723 RTP1P59025 263 aa29.51■■■□□ 2.32
MSX1-201ENST00000382723 ALCAMQ13740 583 aa29.51■■■□□ 2.32
MSX1-201ENST00000382723 SYCP3Q8IZU3 236 aa29.51■■■□□ 2.32
MSX1-201ENST00000382723 VPS16Q9H269 839 aa29.51■■■□□ 2.32
MSX1-201ENST00000382723 MYH11P35749 1972 aa29.51■■■□□ 2.31
MSX1-201ENST00000382723 TGFB1I1O43294 461 aa29.51■■■□□ 2.31
MSX1-201ENST00000382723 TPM3P06753 285 aa29.51■■■□□ 2.31
MSX1-201ENST00000382723 CHMP4BP1P59074 171 aa29.51■■■□□ 2.31
MSX1-201ENST00000382723 EDRF1Q3B7T1 1238 aa29.51■■■□□ 2.31
MSX1-201ENST00000382723 SLC17A8Q8NDX2 589 aa29.51■■■□□ 2.31
MSX1-201ENST00000382723 ASAP3Q8TDY4 903 aa29.51■■■□□ 2.31
MSX1-201ENST00000382723 SPIRE2Q8WWL2 714 aa29.51■■■□□ 2.31
MSX1-201ENST00000382723 ZBTB10Q96DT7 871 aa29.51■■■□□ 2.31
MSX1-201ENST00000382723 A0A1B0GTH6 734 aa29.5■■■□□ 2.31
MSX1-201ENST00000382723 ARL2P36404 184 aa29.5■■■□□ 2.31
MSX1-201ENST00000382723 COPB1P53618 953 aaKnown RBP29.5■■■□□ 2.31
MSX1-201ENST00000382723 BEX3Q00994 111 aa29.5■■■□□ 2.31
MSX1-201ENST00000382723 CACNB2Q08289 660 aaPredicted RBP29.5■■■□□ 2.31
MSX1-201ENST00000382723 ADAM9Q13443 819 aa29.5■■■□□ 2.31
MSX1-201ENST00000382723 DRP2Q13474 957 aa29.5■■■□□ 2.31
MSX1-201ENST00000382723 LRRC71Q8N4P6 559 aa29.5■■■□□ 2.31
MSX1-201ENST00000382723 TMEM161BQ8NDZ6 487 aa29.5■■■□□ 2.31
MSX1-201ENST00000382723 ST6GALNAC4Q9H4F1 302 aa29.5■■■□□ 2.31
MSX1-201ENST00000382723 CLIC2O15247 247 aa29.49■■■□□ 2.31
MSX1-201ENST00000382723 GLRA2P23416 452 aa29.49■■■□□ 2.31
MSX1-201ENST00000382723 NR2F2P24468 414 aa29.49■■■□□ 2.31
MSX1-201ENST00000382723 GTF2BQ00403 316 aa29.49■■■□□ 2.31
MSX1-201ENST00000382723 FILIP1LQ4L180 1135 aa29.49■■■□□ 2.31
MSX1-201ENST00000382723 ZNF296Q8WUU4 475 aaPredicted RBP29.49■■■□□ 2.31
MSX1-201ENST00000382723 ACCSQ96QU6 501 aa29.49■■■□□ 2.31
MSX1-201ENST00000382723 NTPCRQ9BSD7 190 aaKnown RBP29.49■■■□□ 2.31
MSX1-201ENST00000382723 Q9Y3F1 56 aa29.49■■■□□ 2.31
MSX1-201ENST00000382723 THSD7BQ9C0I4 1608 aa29.49■■■□□ 2.31
MSX1-201ENST00000382723 FKTNO75072 461 aa29.49■■■□□ 2.31
MSX1-201ENST00000382723 MTIF2P46199 727 aaKnown RBP29.49■■■□□ 2.31
MSX1-201ENST00000382723 CPT1AP50416 773 aa29.49■■■□□ 2.31
MSX1-201ENST00000382723 NR1I3Q14994 352 aa29.49■■■□□ 2.31
MSX1-201ENST00000382723 ZNF484Q5JVG2 852 aa29.49■■■□□ 2.31
MSX1-201ENST00000382723 ERO1AQ96HE7 468 aa29.49■■■□□ 2.31
MSX1-201ENST00000382723 GBP3Q9H0R5 595 aa29.49■■■□□ 2.31
MSX1-201ENST00000382723 SAGE1Q9NXZ1 904 aa29.49■■■□□ 2.31
MSX1-201ENST00000382723 ADGRA3Q8IWK6 1321 aa29.48■■■□□ 2.31
MSX1-201ENST00000382723 DENND3A2RUS2 1198 aa29.48■■■□□ 2.31
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms