RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 HDAC11Q96DB2 347 aa17.05■□□□□ 0.32
COL17A1-202ENST00000369733 XAB2Q9HCS7 855 aaKnown RBP17.05■□□□□ 0.32
COL17A1-202ENST00000369733 SSU72P8A0A1W2PR75 194 aa17.05■□□□□ 0.32
COL17A1-202ENST00000369733 TCP10L2B9ZVM9 353 aa17.05■□□□□ 0.32
COL17A1-202ENST00000369733 FTLP02792 175 aaPredicted RBP17.05■□□□□ 0.32
COL17A1-202ENST00000369733 ANTXR2P58335 489 aa17.05■□□□□ 0.32
COL17A1-202ENST00000369733 SYDE2Q5VT97 1194 aa17.05■□□□□ 0.32
COL17A1-202ENST00000369733 TRIM9Q9C026 710 aa17.05■□□□□ 0.32
COL17A1-202ENST00000369733 STX1BP61266 288 aa17.05■□□□□ 0.32
COL17A1-202ENST00000369733 PCGF5Q86SE9 256 aa17.05■□□□□ 0.32
COL17A1-202ENST00000369733 CEP70Q8NHQ1 597 aa17.05■□□□□ 0.32
COL17A1-202ENST00000369733 HPS3Q969F9 1004 aa17.05■□□□□ 0.32
COL17A1-202ENST00000369733 FGD4Q96M96 766 aa17.05■□□□□ 0.32
COL17A1-202ENST00000369733 ARFIP2P53365 341 aa17.05■□□□□ 0.32
COL17A1-202ENST00000369733 FAM98CQ17RN3 349 aaKnown RBP17.05■□□□□ 0.32
COL17A1-202ENST00000369733 WDR93Q6P2C0 686 aa17.05■□□□□ 0.32
COL17A1-202ENST00000369733 SYNJ2BP-COX16A0A087WUM0 186 aa17.04■□□□□ 0.32
COL17A1-202ENST00000369733 LRRIQ3A6PVS8 624 aaPredicted RBP17.04■□□□□ 0.32
COL17A1-202ENST00000369733 RAD51CO43502 376 aa17.04■□□□□ 0.32
COL17A1-202ENST00000369733 ECM2O94769 699 aaPredicted RBP17.04■□□□□ 0.32
COL17A1-202ENST00000369733 BMP3P12645 472 aa17.04■□□□□ 0.32
COL17A1-202ENST00000369733 HOXA13P31271 388 aaPredicted RBP17.04■□□□□ 0.32
COL17A1-202ENST00000369733 HSPA2P54652 639 aa17.04■□□□□ 0.32
COL17A1-202ENST00000369733 NAALADL2Q58DX5 795 aa17.04■□□□□ 0.32
COL17A1-202ENST00000369733 TRIM59Q8IWR1 403 aa17.04■□□□□ 0.32
COL17A1-202ENST00000369733 ELOA2Q8IYF1 753 aaPredicted RBP17.04■□□□□ 0.32
COL17A1-202ENST00000369733 SH3RF3Q8TEJ3 882 aaPredicted RBP17.04■□□□□ 0.32
COL17A1-202ENST00000369733 FAM161BQ96MY7 647 aa17.04■□□□□ 0.32
COL17A1-202ENST00000369733 TRIM51Q9BSJ1 452 aa17.04■□□□□ 0.32
COL17A1-202ENST00000369733 INTS2Q9H0H0 1204 aaKnown RBP17.04■□□□□ 0.32
COL17A1-202ENST00000369733 WNT8AQ9H1J5 351 aa17.04■□□□□ 0.32
COL17A1-202ENST00000369733 SMYD3Q9H7B4 428 aa17.04■□□□□ 0.32
COL17A1-202ENST00000369733 SUDS3Q9H7L9 328 aaPredicted RBP17.04■□□□□ 0.32
COL17A1-202ENST00000369733 COX16Q9P0S2 106 aa17.04■□□□□ 0.32
COL17A1-202ENST00000369733 PNMA2Q9UL42 364 aa17.04■□□□□ 0.32
COL17A1-202ENST00000369733 PCDHA6Q9UN73 950 aa17.04■□□□□ 0.32
COL17A1-202ENST00000369733 L1RE1Q9UN81 338 aa17.04■□□□□ 0.32
COL17A1-202ENST00000369733 PCDHA8Q9Y5H6 950 aa17.04■□□□□ 0.32
COL17A1-202ENST00000369733 A2ML1A8K2U0 1454 aa17.04■□□□□ 0.32
COL17A1-202ENST00000369733 GGPS1O95749 300 aa17.04■□□□□ 0.32
COL17A1-202ENST00000369733 SATB1Q01826 763 aa17.04■□□□□ 0.32
COL17A1-202ENST00000369733 WDR75Q8IWA0 830 aaKnown RBP17.04■□□□□ 0.32
COL17A1-202ENST00000369733 SYNE4Q8N205 404 aa17.04■□□□□ 0.32
COL17A1-202ENST00000369733 TFR2Q9UP52 801 aa17.04■□□□□ 0.32
COL17A1-202ENST00000369733 NCAPHQ15003 741 aa17.04■□□□□ 0.32
COL17A1-202ENST00000369733 LARGE2Q8N3Y3 721 aa17.04■□□□□ 0.32
COL17A1-202ENST00000369733 RBM41Q96IZ5 413 aaKnown RBP17.04■□□□□ 0.32
COL17A1-202ENST00000369733 CEP170P1Q96L14 293 aa17.04■□□□□ 0.32
COL17A1-202ENST00000369733 MED10Q9BTT4 135 aa17.04■□□□□ 0.32
COL17A1-202ENST00000369733 ZWILCHQ9H900 591 aa17.04■□□□□ 0.32
COL17A1-202ENST00000369733 BSDC1Q9NW68 430 aaPredicted RBP17.04■□□□□ 0.32
COL17A1-202ENST00000369733 TTC7AQ9ULT0 858 aaPredicted RBP17.04■□□□□ 0.32
COL17A1-202ENST00000369733 HECW2Q9P2P5 1572 aa17.04■□□□□ 0.32
COL17A1-202ENST00000369733 GOLGA8MH3BSY2 632 aa17.04■□□□□ 0.32
COL17A1-202ENST00000369733 RHOBTB3O94955 611 aa17.04■□□□□ 0.32
COL17A1-202ENST00000369733 GCLMP48507 274 aa17.04■□□□□ 0.32
COL17A1-202ENST00000369733 PPM1FP49593 454 aaPredicted RBP17.04■□□□□ 0.32
COL17A1-202ENST00000369733 AP2B1P63010 937 aa17.04■□□□□ 0.32
COL17A1-202ENST00000369733 IRX1P78414 480 aaPredicted RBP17.04■□□□□ 0.32
COL17A1-202ENST00000369733 KLHL38Q2WGJ6 581 aa17.04■□□□□ 0.32
COL17A1-202ENST00000369733 KIAA1755Q5JYT7 1200 aa17.04■□□□□ 0.32
COL17A1-202ENST00000369733 TRIM56Q9BRZ2 755 aaKnown RBP17.04■□□□□ 0.32
COL17A1-202ENST00000369733 MRPL46Q9H2W6 279 aaKnown RBP17.04■□□□□ 0.32
COL17A1-202ENST00000369733 APOEP02649 317 aa17.03■□□□□ 0.32
COL17A1-202ENST00000369733 SRBD1Q8N5C6 995 aaKnown RBP17.03■□□□□ 0.32
COL17A1-202ENST00000369733 DCP1AQ9NPI6 582 aaPredicted RBP17.03■□□□□ 0.32
COL17A1-202ENST00000369733 USP15Q9Y4E8 981 aaPredicted RBP17.03■□□□□ 0.32
COL17A1-202ENST00000369733 H0YIN7 160 aa17.03■□□□□ 0.32
COL17A1-202ENST00000369733 GDF11O95390 407 aa17.03■□□□□ 0.32
COL17A1-202ENST00000369733 CD58P19256 250 aa17.03■□□□□ 0.32
COL17A1-202ENST00000369733 PLCB4Q15147 1175 aa17.03■□□□□ 0.32
COL17A1-202ENST00000369733 ZNF746Q6NUN9 644 aaPredicted RBP17.03■□□□□ 0.32
COL17A1-202ENST00000369733 CCSER1Q9C0I3 900 aa17.03■□□□□ 0.32
COL17A1-202ENST00000369733 CD248Q9HCU0 757 aa17.03■□□□□ 0.32
COL17A1-202ENST00000369733 CDC42BPGQ6DT37 1551 aa17.03■□□□□ 0.32
COL17A1-202ENST00000369733 RGS9BPQ6ZS82 235 aa17.03■□□□□ 0.32
COL17A1-202ENST00000369733 MORC4Q8TE76 937 aa17.03■□□□□ 0.32
COL17A1-202ENST00000369733 KCNB2Q92953 911 aa17.03■□□□□ 0.32
COL17A1-202ENST00000369733 NRBP2Q9NSY0 501 aa17.03■□□□□ 0.32
COL17A1-202ENST00000369733 ADAM22Q9P0K1 906 aa17.03■□□□□ 0.32
COL17A1-202ENST00000369733 CFAP69A5D8W1 941 aa17.03■□□□□ 0.32
COL17A1-202ENST00000369733 PPP1R3GB7ZBB8 358 aa17.03■□□□□ 0.32
COL17A1-202ENST00000369733 CYP27B1O15528 508 aa17.03■□□□□ 0.32
COL17A1-202ENST00000369733 AP3B2Q13367 1082 aa17.03■□□□□ 0.32
COL17A1-202ENST00000369733 TRAPPC11Q7Z392 1133 aa17.03■□□□□ 0.32
COL17A1-202ENST00000369733 ANKRD36BP1Q96IX9 119 aa17.03■□□□□ 0.32
COL17A1-202ENST00000369733 NDE1Q9NXR1 346 aa17.03■□□□□ 0.32
COL17A1-202ENST00000369733 APOBEC2Q9Y235 224 aaKnown RBP17.03■□□□□ 0.32
COL17A1-202ENST00000369733 STMN1P16949 149 aa17.03■□□□□ 0.32
COL17A1-202ENST00000369733 SOX5P35711 763 aa17.03■□□□□ 0.32
COL17A1-202ENST00000369733 KLK7P49862 253 aa17.03■□□□□ 0.32
COL17A1-202ENST00000369733 ZBTB17Q13105 803 aa17.03■□□□□ 0.32
COL17A1-202ENST00000369733 DCLK2Q8N568 766 aa17.03■□□□□ 0.32
COL17A1-202ENST00000369733 C1orf54Q8WWF1 131 aa17.03■□□□□ 0.32
COL17A1-202ENST00000369733 TLK1Q9UKI8 766 aa17.03■□□□□ 0.32
COL17A1-202ENST00000369733 PDS5AQ29RF7 1337 aaKnown RBP17.02■□□□□ 0.32
COL17A1-202ENST00000369733 MED7O43513 233 aa17.02■□□□□ 0.32
COL17A1-202ENST00000369733 KITP10721 976 aa17.02■□□□□ 0.32
COL17A1-202ENST00000369733 ERVK-24P63145 666 aa17.02■□□□□ 0.32
COL17A1-202ENST00000369733 TAF12Q16514 161 aa17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms