RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 METTL13Q8N6R0 699 aa19.37■□□□□ 0.69
CLN3-216ENST00000565316 SLC5A5Q92911 643 aa19.37■□□□□ 0.69
CLN3-216ENST00000565316 CCDC136Q96JN2 1154 aa19.37■□□□□ 0.69
CLN3-216ENST00000565316 RIT2Q99578 217 aa19.37■□□□□ 0.69
CLN3-216ENST00000565316 OSMRQ99650 979 aa19.37■□□□□ 0.69
CLN3-216ENST00000565316 ZSWIM6Q9HCJ5 1215 aa19.37■□□□□ 0.69
CLN3-216ENST00000565316 ZNF862O60290 1169 aa19.36■□□□□ 0.69
CLN3-216ENST00000565316 TBX10O75333 385 aa19.36■□□□□ 0.69
CLN3-216ENST00000565316 VTNP04004 478 aa19.36■□□□□ 0.69
CLN3-216ENST00000565316 ZNF710Q8N1W2 664 aa19.36■□□□□ 0.69
CLN3-216ENST00000565316 POF1BQ8WVV4 589 aa19.36■□□□□ 0.69
CLN3-216ENST00000565316 ADAMTS10Q9H324 1103 aa19.36■□□□□ 0.69
CLN3-216ENST00000565316 DISC1Q9NRI5 854 aa19.36■□□□□ 0.69
CLN3-216ENST00000565316 KIAA1671Q9BY89 1806 aa19.35■□□□□ 0.69
CLN3-216ENST00000565316 EVPLQ92817 2033 aa19.35■□□□□ 0.69
CLN3-216ENST00000565316 FAM86C2PA6NEL3 165 aa19.35■□□□□ 0.69
CLN3-216ENST00000565316 LINC01565O15544 149 aa19.35■□□□□ 0.69
CLN3-216ENST00000565316 MBTPS2O43462 519 aa19.35■□□□□ 0.69
CLN3-216ENST00000565316 ALADP13716 330 aa19.35■□□□□ 0.69
CLN3-216ENST00000565316 IRS1P35568 1242 aa19.35■□□□□ 0.69
CLN3-216ENST00000565316 FAM102BQ5T8I3 360 aa19.35■□□□□ 0.69
CLN3-216ENST00000565316 EFHBQ8N7U6 833 aa19.35■□□□□ 0.69
CLN3-216ENST00000565316 PPP2R3CQ969Q6 453 aa19.35■□□□□ 0.69
CLN3-216ENST00000565316 IGFLR1Q9H665 355 aa19.35■□□□□ 0.69
CLN3-216ENST00000565316 ELAC1Q9H777 363 aaKnown RBP19.35■□□□□ 0.69
CLN3-216ENST00000565316 NRBP2Q9NSY0 501 aa19.35■□□□□ 0.69
CLN3-216ENST00000565316 TMEM161AQ9NX61 479 aa19.35■□□□□ 0.69
CLN3-216ENST00000565316 SAMM50Q9Y512 469 aa19.35■□□□□ 0.69
CLN3-216ENST00000565316 CYP3A7-CYP3A51PA0A087WV96 503 aa19.34■□□□□ 0.69
CLN3-216ENST00000565316 TBKBP1A7MCY6 615 aa19.34■□□□□ 0.69
CLN3-216ENST00000565316 OATP04181 439 aa19.34■□□□□ 0.69
CLN3-216ENST00000565316 CYP3A7P24462 503 aa19.34■□□□□ 0.69
CLN3-216ENST00000565316 SFNP31947 248 aa19.34■□□□□ 0.69
CLN3-216ENST00000565316 CLCN3P51790 818 aa19.34■□□□□ 0.69
CLN3-216ENST00000565316 UBE3AQ05086 875 aa19.34■□□□□ 0.69
CLN3-216ENST00000565316 SMAD4Q13485 552 aaKnown RBP19.34■□□□□ 0.69
CLN3-216ENST00000565316 Q4G0T1 1027 aa19.34■□□□□ 0.69
CLN3-216ENST00000565316 EFCAB12Q6NXP0 572 aa19.34■□□□□ 0.69
CLN3-216ENST00000565316 TRMT1LQ7Z2T5 733 aaKnown RBP19.34■□□□□ 0.69
CLN3-216ENST00000565316 FAM177A1Q8N128 213 aaPredicted RBP19.34■□□□□ 0.69
CLN3-216ENST00000565316 ZNF274Q96GC6 653 aaPredicted RBP19.34■□□□□ 0.69
CLN3-216ENST00000565316 MSLNLQ96KJ4 702 aa19.34■□□□□ 0.69
CLN3-216ENST00000565316 PPP1R16BQ96T49 567 aa19.34■□□□□ 0.69
CLN3-216ENST00000565316 C22orf23Q9BZE7 217 aa19.34■□□□□ 0.69
CLN3-216ENST00000565316 TM6SF1Q9BZW5 370 aa19.34■□□□□ 0.69
CLN3-216ENST00000565316 CD207Q9UJ71 328 aa19.34■□□□□ 0.69
CLN3-216ENST00000565316 PCDHA4Q9UN74 947 aa19.34■□□□□ 0.69
CLN3-216ENST00000565316 PCDHB12Q9Y5F1 795 aa19.34■□□□□ 0.69
CLN3-216ENST00000565316 C5orf42Q9H799 3197 aa19.34■□□□□ 0.69
CLN3-216ENST00000565316 MYH9P35579 1960 aaKnown RBP19.34■□□□□ 0.69
CLN3-216ENST00000565316 M0R2N6 131 aa19.33■□□□□ 0.69
CLN3-216ENST00000565316 GAS7O60861 476 aa19.33■□□□□ 0.69
CLN3-216ENST00000565316 CSPG5O95196 566 aa19.33■□□□□ 0.69
CLN3-216ENST00000565316 EYA4O95677 639 aa19.33■□□□□ 0.69
CLN3-216ENST00000565316 TMOD1P28289 359 aa19.33■□□□□ 0.69
CLN3-216ENST00000565316 JAK3P52333 1124 aa19.33■□□□□ 0.69
CLN3-216ENST00000565316 NLRP11P59045 1033 aaKnown RBP19.33■□□□□ 0.69
CLN3-216ENST00000565316 NLRP5P59047 1200 aa19.33■□□□□ 0.69
CLN3-216ENST00000565316 PRKCEQ02156 737 aa19.33■□□□□ 0.69
CLN3-216ENST00000565316 SSRP1Q08945 709 aaKnown RBP19.33■□□□□ 0.69
CLN3-216ENST00000565316 CLUL1Q15846 466 aa19.33■□□□□ 0.69
CLN3-216ENST00000565316 UGCGQ16739 394 aa19.33■□□□□ 0.69
CLN3-216ENST00000565316 B3GNT9Q6UX72 402 aa19.33■□□□□ 0.69
CLN3-216ENST00000565316 ADGRD2Q7Z7M1 963 aa19.33■□□□□ 0.69
CLN3-216ENST00000565316 TRIM22Q8IYM9 498 aa19.33■□□□□ 0.69
CLN3-216ENST00000565316 RDM1Q8NG50 284 aa19.33■□□□□ 0.69
CLN3-216ENST00000565316 TBCKQ8TEA7 893 aa19.33■□□□□ 0.69
CLN3-216ENST00000565316 FAM122AQ96E09 287 aa19.33■□□□□ 0.69
CLN3-216ENST00000565316 MAP7D2Q96T17 732 aa19.33■□□□□ 0.69
CLN3-216ENST00000565316 UNC45AQ9H3U1 944 aa19.33■□□□□ 0.69
CLN3-216ENST00000565316 ATP6V0A4Q9HBG4 840 aa19.33■□□□□ 0.69
CLN3-216ENST00000565316 AAASQ9NRG9 546 aa19.33■□□□□ 0.69
CLN3-216ENST00000565316 HCN4Q9Y3Q4 1203 aa19.33■□□□□ 0.69
CLN3-216ENST00000565316 CYP46A1Q9Y6A2 500 aa19.33■□□□□ 0.69
CLN3-216ENST00000565316 TRIOO75962 3097 aa19.33■□□□□ 0.68
CLN3-216ENST00000565316 PRR33A8MZF0 331 aa19.32■□□□□ 0.68
CLN3-216ENST00000565316 DCXO43602 365 aa19.32■□□□□ 0.68
CLN3-216ENST00000565316 PSMD10O75832 226 aa19.32■□□□□ 0.68
CLN3-216ENST00000565316 IBSPP21815 317 aaPredicted RBP19.32■□□□□ 0.68
CLN3-216ENST00000565316 EIF4BP23588 611 aaKnown RBP19.32■□□□□ 0.68
CLN3-216ENST00000565316 TARBP2Q15633 366 aaKnown RBP19.32■□□□□ 0.68
CLN3-216ENST00000565316 NPY5RQ15761 445 aa19.32■□□□□ 0.68
CLN3-216ENST00000565316 CSPP1Q1MSJ5 1256 aa19.32■□□□□ 0.68
CLN3-216ENST00000565316 LRCH2Q5VUJ6 765 aa19.32■□□□□ 0.68
CLN3-216ENST00000565316 DAGLBQ8NCG7 672 aa19.32■□□□□ 0.68
CLN3-216ENST00000565316 MBOAT7Q96N66 472 aa19.32■□□□□ 0.68
CLN3-216ENST00000565316 TEKT3Q9BXF9 490 aa19.32■□□□□ 0.68
CLN3-216ENST00000565316 CWH43Q9H720 699 aa19.32■□□□□ 0.68
CLN3-216ENST00000565316 TYW1Q9NV66 732 aaKnown RBP19.32■□□□□ 0.68
CLN3-216ENST00000565316 CLEC1BQ9P126 229 aa19.32■□□□□ 0.68
CLN3-216ENST00000565316 AKT3Q9Y243 479 aa19.32■□□□□ 0.68
CLN3-216ENST00000565316 FNDC1Q4ZHG4 1894 aaPredicted RBP19.32■□□□□ 0.68
CLN3-216ENST00000565316 DEXIO95424 95 aa19.31■□□□□ 0.68
CLN3-216ENST00000565316 FGFR1P11362 822 aa19.31■□□□□ 0.68
CLN3-216ENST00000565316 COASYQ13057 564 aa19.31■□□□□ 0.68
CLN3-216ENST00000565316 LRRC71Q8N4P6 559 aa19.31■□□□□ 0.68
CLN3-216ENST00000565316 COLGALT1Q8NBJ5 622 aa19.31■□□□□ 0.68
CLN3-216ENST00000565316 GJA10Q969M2 543 aa19.31■□□□□ 0.68
CLN3-216ENST00000565316 POP1Q99575 1024 aaKnown RBP19.31■□□□□ 0.68
CLN3-216ENST00000565316 NIFKQ9BYG3 293 aaKnown RBP19.31■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms