RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 ADAMTS10Q9H324 1103 aa10.34□□□□□ -0.75
VPS35-206ENST00000565228 NOL7Q9UMY1 257 aaKnown RBP10.34□□□□□ -0.75
VPS35-206ENST00000565228 MGEA5O60502 916 aa10.33□□□□□ -0.76
VPS35-206ENST00000565228 MAFO75444 373 aaPredicted RBP10.33□□□□□ -0.76
VPS35-206ENST00000565228 CSDE1O75534 798 aaKnown RBP10.33□□□□□ -0.76
VPS35-206ENST00000565228 BRD1O95696 1058 aa10.33□□□□□ -0.76
VPS35-206ENST00000565228 GHRP10912 638 aa10.33□□□□□ -0.76
VPS35-206ENST00000565228 MYOGP15173 224 aa10.33□□□□□ -0.76
VPS35-206ENST00000565228 YWHABP31946 246 aaKnown RBP10.33□□□□□ -0.76
VPS35-206ENST00000565228 RARRES1P49788 294 aa10.33□□□□□ -0.76
VPS35-206ENST00000565228 MRPS6P82932 125 aaKnown RBP10.33□□□□□ -0.76
VPS35-206ENST00000565228 CEBPZQ03701 1054 aaKnown RBP10.33□□□□□ -0.76
VPS35-206ENST00000565228 GRB10Q13322 594 aa10.33□□□□□ -0.76
VPS35-206ENST00000565228 PPIGQ13427 754 aaKnown RBP eCLIP10.33□□□□□ -0.76
VPS35-206ENST00000565228 TMEM266Q2M3C6 531 aa10.33□□□□□ -0.76
VPS35-206ENST00000565228 FOXD4L6Q3SYB3 417 aaPredicted RBP10.33□□□□□ -0.76
VPS35-206ENST00000565228 PLEKHG4Q58EX7 1191 aa10.33□□□□□ -0.76
VPS35-206ENST00000565228 SPECC1Q5M775 1068 aa10.33□□□□□ -0.76
VPS35-206ENST00000565228 FBXO47Q5MNV8 452 aa10.33□□□□□ -0.76
VPS35-206ENST00000565228 EFCAB12Q6NXP0 572 aa10.33□□□□□ -0.76
VPS35-206ENST00000565228 FOXD4L3Q6VB84 417 aaPredicted RBP10.33□□□□□ -0.76
VPS35-206ENST00000565228 BRAPQ7Z569 592 aa10.33□□□□□ -0.76
VPS35-206ENST00000565228 POLR3CQ9BUI4 534 aaPredicted RBP10.33□□□□□ -0.76
VPS35-206ENST00000565228 DHX33Q9H6R0 707 aaKnown RBP10.33□□□□□ -0.76
VPS35-206ENST00000565228 CYP26B1Q9NR63 512 aa10.33□□□□□ -0.76
VPS35-206ENST00000565228 TFIP11Q9UBB9 837 aaKnown RBP10.33□□□□□ -0.76
VPS35-206ENST00000565228 FBXO2Q9UK22 296 aaPredicted RBP10.33□□□□□ -0.76
VPS35-206ENST00000565228 KIF3AQ9Y496 699 aa10.33□□□□□ -0.76
VPS35-206ENST00000565228 TTC3P53804 2025 aa10.33□□□□□ -0.76
VPS35-206ENST00000565228 MYO9BQ13459 2157 aa10.32□□□□□ -0.76
VPS35-206ENST00000565228 A0A087X0B3 334 aa10.32□□□□□ -0.76
VPS35-206ENST00000565228 VWA3AA6NCI4 1184 aa10.32□□□□□ -0.76
VPS35-206ENST00000565228 E9PMD0 336 aa10.32□□□□□ -0.76
VPS35-206ENST00000565228 BAG4O95429 457 aaKnown RBP10.32□□□□□ -0.76
VPS35-206ENST00000565228 F13A1P00488 732 aa10.32□□□□□ -0.76
VPS35-206ENST00000565228 FGBP02675 491 aa10.32□□□□□ -0.76
VPS35-206ENST00000565228 ZSCAN22P10073 491 aaPredicted RBP10.32□□□□□ -0.76
VPS35-206ENST00000565228 FGFR4P22455 802 aa10.32□□□□□ -0.76
VPS35-206ENST00000565228 RPA1P27694 616 aa10.32□□□□□ -0.76
VPS35-206ENST00000565228 MARCKSP29966 332 aaPredicted RBP10.32□□□□□ -0.76
VPS35-206ENST00000565228 CD52P31358 61 aa10.32□□□□□ -0.76
VPS35-206ENST00000565228 PRPHP41219 470 aa10.32□□□□□ -0.76
VPS35-206ENST00000565228 RABGGTBP53611 331 aa10.32□□□□□ -0.76
VPS35-206ENST00000565228 KIZQ2M2Z5 673 aa10.32□□□□□ -0.76
VPS35-206ENST00000565228 LRIT3Q3SXY7 679 aa10.32□□□□□ -0.76
VPS35-206ENST00000565228 TAF2Q6P1X5 1199 aa10.32□□□□□ -0.76
VPS35-206ENST00000565228 RETREG2Q8NC44 543 aa10.32□□□□□ -0.76
VPS35-206ENST00000565228 ASAP3Q8TDY4 903 aa10.32□□□□□ -0.76
VPS35-206ENST00000565228 BSNDQ8WZ55 320 aa10.32□□□□□ -0.76
VPS35-206ENST00000565228 TMEM143Q96AN5 459 aa10.32□□□□□ -0.76
VPS35-206ENST00000565228 FAM167AQ96KS9 214 aa10.32□□□□□ -0.76
VPS35-206ENST00000565228 RNPC3Q96LT9 517 aaKnown RBP10.32□□□□□ -0.76
VPS35-206ENST00000565228 PLIN2Q99541 437 aa10.32□□□□□ -0.76
VPS35-206ENST00000565228 OSMRQ99650 979 aa10.32□□□□□ -0.76
VPS35-206ENST00000565228 CELF4Q9BZC1 486 aaKnown RBP10.32□□□□□ -0.76
VPS35-206ENST00000565228 ZSWIM4Q9H7M6 989 aa10.32□□□□□ -0.76
VPS35-206ENST00000565228 GPRC5CQ9NQ84 441 aa10.32□□□□□ -0.76
VPS35-206ENST00000565228 NRBP2Q9NSY0 501 aa10.32□□□□□ -0.76
VPS35-206ENST00000565228 YBX2Q9Y2T7 364 aaKnown RBP10.32□□□□□ -0.76
VPS35-206ENST00000565228 NOC2LQ9Y3T9 749 aaKnown RBP10.32□□□□□ -0.76
VPS35-206ENST00000565228 KDM3AQ9Y4C1 1321 aa10.32□□□□□ -0.76
VPS35-206ENST00000565228 MARCH6O60337 910 aa10.31□□□□□ -0.76
VPS35-206ENST00000565228 EDN1P05305 212 aa10.31□□□□□ -0.76
VPS35-206ENST00000565228 GNAT1P11488 350 aa10.31□□□□□ -0.76
VPS35-206ENST00000565228 PDCP20941 246 aa10.31□□□□□ -0.76
VPS35-206ENST00000565228 GPC3P51654 580 aa10.31□□□□□ -0.76
VPS35-206ENST00000565228 WDR5P61964 334 aaKnown RBP10.31□□□□□ -0.76
VPS35-206ENST00000565228 PDIA5Q14554 519 aa10.31□□□□□ -0.76
VPS35-206ENST00000565228 TMEM119Q4V9L6 283 aa10.31□□□□□ -0.76
VPS35-206ENST00000565228 HYIQ5T013 277 aa10.31□□□□□ -0.76
VPS35-206ENST00000565228 Q7L0L9 218 aa10.31□□□□□ -0.76
VPS35-206ENST00000565228 FAM228AQ86W67 206 aa10.31□□□□□ -0.76
VPS35-206ENST00000565228 CRIPAKQ8N1N5 446 aa10.31□□□□□ -0.76
VPS35-206ENST00000565228 METTL13Q8N6R0 699 aa10.31□□□□□ -0.76
VPS35-206ENST00000565228 CEP170P1Q96L14 293 aa10.31□□□□□ -0.76
VPS35-206ENST00000565228 CSRNP2Q9H175 543 aa10.31□□□□□ -0.76
VPS35-206ENST00000565228 MINDY3Q9H8M7 445 aa10.31□□□□□ -0.76
VPS35-206ENST00000565228 SUGCTQ9HAC7 445 aa10.31□□□□□ -0.76
VPS35-206ENST00000565228 ERVK-5Q9HDB9 667 aa10.31□□□□□ -0.76
VPS35-206ENST00000565228 TUFT1Q9NNX1 390 aa10.31□□□□□ -0.76
VPS35-206ENST00000565228 LRWD1Q9UFC0 647 aa10.31□□□□□ -0.76
VPS35-206ENST00000565228 TRPV2Q9Y5S1 764 aa10.31□□□□□ -0.76
VPS35-206ENST00000565228 A0A1W2PPC1 479 aa10.3□□□□□ -0.76
VPS35-206ENST00000565228 LCHNA4D1U4 455 aa10.3□□□□□ -0.76
VPS35-206ENST00000565228 CAND2O75155 1236 aa10.3□□□□□ -0.76
VPS35-206ENST00000565228 RFC2P35250 354 aa10.3□□□□□ -0.76
VPS35-206ENST00000565228 ARL2P36404 184 aa10.3□□□□□ -0.76
VPS35-206ENST00000565228 CCT6AP40227 531 aaKnown RBP10.3□□□□□ -0.76
VPS35-206ENST00000565228 NASPP49321 788 aaPredicted RBP10.3□□□□□ -0.76
VPS35-206ENST00000565228 NLRP11P59045 1033 aaKnown RBP10.3□□□□□ -0.76
VPS35-206ENST00000565228 DNM1Q05193 864 aaKnown RBP10.3□□□□□ -0.76
VPS35-206ENST00000565228 TBC1D8BQ0IIM8 1120 aa10.3□□□□□ -0.76
VPS35-206ENST00000565228 MAPK7Q13164 816 aa10.3□□□□□ -0.76
VPS35-206ENST00000565228 EMC2Q15006 297 aa10.3□□□□□ -0.76
VPS35-206ENST00000565228 XKR9Q5GH70 373 aa10.3□□□□□ -0.76
VPS35-206ENST00000565228 CNKSR3Q6P9H4 555 aa10.3□□□□□ -0.76
VPS35-206ENST00000565228 PSRC1Q6PGN9 363 aaPredicted RBP10.3□□□□□ -0.76
VPS35-206ENST00000565228 DTHD1Q6ZMT9 781 aa10.3□□□□□ -0.76
VPS35-206ENST00000565228 DAW1Q8N136 415 aa10.3□□□□□ -0.76
VPS35-206ENST00000565228 LINC00301Q8NCQ3 95 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms