RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 BRF1Q92994 677 aa8.44□□□□□ -1.06
USP4-211ENST00000485450 LENG9Q96B70 501 aa8.44□□□□□ -1.06
USP4-211ENST00000485450 COA7Q96BR5 231 aa8.44□□□□□ -1.06
USP4-211ENST00000485450 KLC4Q9NSK0 619 aa8.44□□□□□ -1.06
USP4-211ENST00000485450 FRMPD2Q68DX3 1309 aaPredicted RBP8.44□□□□□ -1.06
USP4-211ENST00000485450 ASB14A6NK59 587 aa8.44□□□□□ -1.06
USP4-211ENST00000485450 MAP3K13O43283 966 aa8.44□□□□□ -1.06
USP4-211ENST00000485450 METAP2P50579 478 aaKnown RBP eCLIP8.44□□□□□ -1.06
USP4-211ENST00000485450 PPFIA1Q13136 1202 aa8.44□□□□□ -1.06
USP4-211ENST00000485450 LAMB3Q13751 1172 aa8.44□□□□□ -1.06
USP4-211ENST00000485450 KIF22Q14807 665 aa8.44□□□□□ -1.06
USP4-211ENST00000485450 PLCB4Q15147 1175 aa8.44□□□□□ -1.06
USP4-211ENST00000485450 SLC30A10Q6XR72 485 aa8.44□□□□□ -1.06
USP4-211ENST00000485450 RRP36Q96EU6 259 aaKnown RBP8.44□□□□□ -1.06
USP4-211ENST00000485450 PIGSQ96S52 555 aa8.44□□□□□ -1.06
USP4-211ENST00000485450 RNF146Q9NTX7 359 aa8.44□□□□□ -1.06
USP4-211ENST00000485450 PUF60Q9UHX1 559 aaKnown RBP8.44□□□□□ -1.06
USP4-211ENST00000485450 PHF24Q9UPV7 400 aa8.44□□□□□ -1.06
USP4-211ENST00000485450 GRIN2DO15399 1336 aa8.44□□□□□ -1.06
USP4-211ENST00000485450 PDCD11Q14690 1871 aaKnown RBP8.44□□□□□ -1.06
USP4-211ENST00000485450 NFIBO00712 420 aa8.43□□□□□ -1.06
USP4-211ENST00000485450 SLC26A4O43511 780 aa8.43□□□□□ -1.06
USP4-211ENST00000485450 CLNS1AP54105 237 aaKnown RBP8.43□□□□□ -1.06
USP4-211ENST00000485450 CWF19L1Q69YN2 538 aaKnown RBP8.43□□□□□ -1.06
USP4-211ENST00000485450 MIS18BP1Q6P0N0 1132 aa8.43□□□□□ -1.06
USP4-211ENST00000485450 TRIM42Q8IWZ5 723 aa8.43□□□□□ -1.06
USP4-211ENST00000485450 EXOC8Q8IYI6 725 aa8.43□□□□□ -1.06
USP4-211ENST00000485450 ARL10Q8N8L6 244 aa8.43□□□□□ -1.06
USP4-211ENST00000485450 FAM76AQ8TAV0 307 aa8.43□□□□□ -1.06
USP4-211ENST00000485450 SPDL1Q96EA4 605 aa8.43□□□□□ -1.06
USP4-211ENST00000485450 BICD1Q96G01 975 aa8.43□□□□□ -1.06
USP4-211ENST00000485450 TINF2Q9BSI4 451 aa8.43□□□□□ -1.06
USP4-211ENST00000485450 PHACTR1Q9C0D0 580 aa8.43□□□□□ -1.06
USP4-211ENST00000485450 HSD3B7Q9H2F3 369 aa8.43□□□□□ -1.06
USP4-211ENST00000485450 RAVER2Q9HCJ3 691 aaKnown RBP8.43□□□□□ -1.06
USP4-211ENST00000485450 KIAA1468Q9P260 1216 aa8.43□□□□□ -1.06
USP4-211ENST00000485450 HPCAL4Q9UM19 191 aa8.43□□□□□ -1.06
USP4-211ENST00000485450 SPATA31C2B4DYI2 1134 aa8.43□□□□□ -1.06
USP4-211ENST00000485450 MEFVO15553 781 aaPredicted RBP8.43□□□□□ -1.06
USP4-211ENST00000485450 FOSP01100 380 aaPredicted RBP8.43□□□□□ -1.06
USP4-211ENST00000485450 FESP07332 822 aa8.43□□□□□ -1.06
USP4-211ENST00000485450 TGFB3P10600 412 aa8.43□□□□□ -1.06
USP4-211ENST00000485450 ARHGAP25P42331 645 aa8.43□□□□□ -1.06
USP4-211ENST00000485450 SLC8A3P57103 927 aa8.43□□□□□ -1.06
USP4-211ENST00000485450 CACNB2Q08289 660 aaPredicted RBP8.43□□□□□ -1.06
USP4-211ENST00000485450 PGM5Q15124 567 aa8.43□□□□□ -1.06
USP4-211ENST00000485450 PAGR1Q9BTK6 254 aa8.43□□□□□ -1.06
USP4-211ENST00000485450 ZCWPW1Q9H0M4 648 aa8.43□□□□□ -1.06
USP4-211ENST00000485450 HOMER3Q9NSC5 361 aa8.43□□□□□ -1.06
USP4-211ENST00000485450 HAS3O00219 553 aa8.43□□□□□ -1.06
USP4-211ENST00000485450 GJB1P08034 283 aa8.43□□□□□ -1.06
USP4-211ENST00000485450 FLT3LGP49771 235 aa8.43□□□□□ -1.06
USP4-211ENST00000485450 PPP4R3AQ6IN85 833 aa8.43□□□□□ -1.06
USP4-211ENST00000485450 TOGARAM2Q6ZUX3 1019 aa8.43□□□□□ -1.06
USP4-211ENST00000485450 FMR1NBQ8N0W7 255 aaPredicted RBP8.43□□□□□ -1.06
USP4-211ENST00000485450 GPRASP2Q96D09 838 aa8.43□□□□□ -1.06
USP4-211ENST00000485450 SLC5A4Q9NY91 659 aa8.43□□□□□ -1.06
USP4-211ENST00000485450 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.43□□□□□ -1.06
USP4-211ENST00000485450 SEPT4O43236 478 aa8.42□□□□□ -1.06
USP4-211ENST00000485450 ADCY6O43306 1168 aa8.42□□□□□ -1.06
USP4-211ENST00000485450 SMNDC1O75940 238 aaKnown RBP eCLIP8.42□□□□□ -1.06
USP4-211ENST00000485450 KIAA0754O94854 1291 aa8.42□□□□□ -1.06
USP4-211ENST00000485450 TBX2Q13207 712 aaPredicted RBP8.42□□□□□ -1.06
USP4-211ENST00000485450 CEP85LQ5SZL2 805 aa8.42□□□□□ -1.06
USP4-211ENST00000485450 IQSEC1Q6DN90 963 aa8.42□□□□□ -1.06
USP4-211ENST00000485450 CHST3Q7LGC8 479 aa8.42□□□□□ -1.06
USP4-211ENST00000485450 ELOA2Q8IYF1 753 aaPredicted RBP8.42□□□□□ -1.06
USP4-211ENST00000485450 CAPS2Q9BXY5 557 aa8.42□□□□□ -1.06
USP4-211ENST00000485450 PRO3102Q9H379 93 aa8.42□□□□□ -1.06
USP4-211ENST00000485450 ATP6V0A4Q9HBG4 840 aa8.42□□□□□ -1.06
USP4-211ENST00000485450 CCPG1Q9ULG6 757 aa8.42□□□□□ -1.06
USP4-211ENST00000485450 GOLGA8AA7E2F4 631 aa8.42□□□□□ -1.06
USP4-211ENST00000485450 GOLGA8BA8MQT2 603 aa8.42□□□□□ -1.06
USP4-211ENST00000485450 RNF8O76064 485 aa8.42□□□□□ -1.06
USP4-211ENST00000485450 LINGO3P0C6S8 592 aa8.42□□□□□ -1.06
USP4-211ENST00000485450 RHOXF2BP0C7M4 288 aa8.42□□□□□ -1.06
USP4-211ENST00000485450 GRK4P32298 578 aa8.42□□□□□ -1.06
USP4-211ENST00000485450 RANBP1P43487 201 aa8.42□□□□□ -1.06
USP4-211ENST00000485450 USP11P51784 963 aa8.42□□□□□ -1.06
USP4-211ENST00000485450 UBASH3AP57075 661 aa8.42□□□□□ -1.06
USP4-211ENST00000485450 NLRP12P59046 1061 aa8.42□□□□□ -1.06
USP4-211ENST00000485450 MRPS9P82933 396 aaKnown RBP8.42□□□□□ -1.06
USP4-211ENST00000485450 PTPN11Q06124 597 aaPredicted RBP8.42□□□□□ -1.06
USP4-211ENST00000485450 RRP12Q5JTH9 1297 aaKnown RBP8.42□□□□□ -1.06
USP4-211ENST00000485450 ATL3Q6DD88 541 aa8.42□□□□□ -1.06
USP4-211ENST00000485450 SMCR8Q8TEV9 937 aaPredicted RBP8.42□□□□□ -1.06
USP4-211ENST00000485450 RHOXF2Q9BQY4 288 aa8.42□□□□□ -1.06
USP4-211ENST00000485450 PDCD2LQ9BRP1 358 aa8.42□□□□□ -1.06
USP4-211ENST00000485450 MMADHCQ9H3L0 296 aaPredicted RBP8.42□□□□□ -1.06
USP4-211ENST00000485450 ABHD16BQ9H3Z7 469 aa8.42□□□□□ -1.06
USP4-211ENST00000485450 ATG2AQ2TAZ0 1938 aa8.42□□□□□ -1.06
USP4-211ENST00000485450 LGR5O75473 907 aa8.42□□□□□ -1.06
USP4-211ENST00000485450 EIF4BP23588 611 aaKnown RBP8.42□□□□□ -1.06
USP4-211ENST00000485450 SLC16A2P36021 539 aa8.42□□□□□ -1.06
USP4-211ENST00000485450 CDK7P50613 346 aa8.42□□□□□ -1.06
USP4-211ENST00000485450 RPS6P62753 249 aaKnown RBP8.42□□□□□ -1.06
USP4-211ENST00000485450 ACCSLQ4AC99 568 aa8.42□□□□□ -1.06
USP4-211ENST00000485450 COL13A1Q5TAT6 717 aaPredicted RBP8.42□□□□□ -1.06
USP4-211ENST00000485450 CCDC50Q8IVM0 306 aa8.42□□□□□ -1.06
USP4-211ENST00000485450 BEGAINQ9BUH8 593 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms