RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 ZNF669Q96BR6 464 aaPredicted RBP5.65□□□□□ -1.5
VPS29-202ENST00000447578 CDC6Q99741 560 aa5.65□□□□□ -1.5
VPS29-202ENST00000447578 AMNQ9BXJ7 453 aa5.65□□□□□ -1.5
VPS29-202ENST00000447578 UCKL1Q9NWZ5 548 aa5.65□□□□□ -1.5
VPS29-202ENST00000447578 CECR2Q9BXF3 1484 aa5.64□□□□□ -1.51
VPS29-202ENST00000447578 TRBV23-1A0A0A0MS06 115 aa5.64□□□□□ -1.51
VPS29-202ENST00000447578 ZNF561-AS1K7EIQ3 104 aa5.64□□□□□ -1.51
VPS29-202ENST00000447578 ARVCFO00192 962 aa5.64□□□□□ -1.51
VPS29-202ENST00000447578 MPIG6BO95866 241 aa5.64□□□□□ -1.51
VPS29-202ENST00000447578 AOAHP28039 575 aa5.64□□□□□ -1.51
VPS29-202ENST00000447578 DNM2P50570 870 aa5.64□□□□□ -1.51
VPS29-202ENST00000447578 ST5P78524 1137 aa5.64□□□□□ -1.51
VPS29-202ENST00000447578 CD83Q01151 205 aa5.64□□□□□ -1.51
VPS29-202ENST00000447578 NFYCQ13952 458 aa5.64□□□□□ -1.51
VPS29-202ENST00000447578 PCOLCEQ15113 449 aa5.64□□□□□ -1.51
VPS29-202ENST00000447578 C21orf62-AS1Q17RA5 79 aa5.64□□□□□ -1.51
VPS29-202ENST00000447578 FIGNQ5HY92 759 aa5.64□□□□□ -1.51
VPS29-202ENST00000447578 MAMDC2Q7Z304 686 aaPredicted RBP5.64□□□□□ -1.51
VPS29-202ENST00000447578 RPUSD2Q8IZ73 545 aaKnown RBP5.64□□□□□ -1.51
VPS29-202ENST00000447578 ZSWIM2Q8NEG5 633 aa5.64□□□□□ -1.51
VPS29-202ENST00000447578 CHFRQ96EP1 664 aa5.64□□□□□ -1.51
VPS29-202ENST00000447578 WNK4Q96J92 1243 aa5.64□□□□□ -1.51
VPS29-202ENST00000447578 PLEKHG4BQ96PX9 1271 aa5.64□□□□□ -1.51
VPS29-202ENST00000447578 SMURF1Q9HCE7 757 aa5.64□□□□□ -1.51
VPS29-202ENST00000447578 KLHL42Q9P2K6 505 aa5.64□□□□□ -1.51
VPS29-202ENST00000447578 PUF60Q9UHX1 559 aaKnown RBP5.64□□□□□ -1.51
VPS29-202ENST00000447578 RB1CC1Q8TDY2 1594 aa5.63□□□□□ -1.51
VPS29-202ENST00000447578 FAM153BP0C7A2 387 aa5.63□□□□□ -1.51
VPS29-202ENST00000447578 GJA4P35212 333 aa5.63□□□□□ -1.51
VPS29-202ENST00000447578 MSX2P35548 267 aaPredicted RBP5.63□□□□□ -1.51
VPS29-202ENST00000447578 MRE11P49959 708 aa5.63□□□□□ -1.51
VPS29-202ENST00000447578 EIF4HQ15056 248 aaKnown RBP5.63□□□□□ -1.51
VPS29-202ENST00000447578 STILQ15468 1287 aa5.63□□□□□ -1.51
VPS29-202ENST00000447578 CRY1Q16526 586 aa5.63□□□□□ -1.51
VPS29-202ENST00000447578 DALRD3Q5D0E6 543 aaKnown RBP5.63□□□□□ -1.51
VPS29-202ENST00000447578 USP30Q70CQ3 517 aa5.63□□□□□ -1.51
VPS29-202ENST00000447578 CXXC5Q7LFL8 322 aaKnown RBP5.63□□□□□ -1.51
VPS29-202ENST00000447578 OTOP2Q7RTS6 562 aa5.63□□□□□ -1.51
VPS29-202ENST00000447578 GPR135Q8IZ08 494 aa5.63□□□□□ -1.51
VPS29-202ENST00000447578 FAM89AQ96GI7 184 aa5.63□□□□□ -1.51
VPS29-202ENST00000447578 CHMP4AQ9BY43 222 aa5.63□□□□□ -1.51
VPS29-202ENST00000447578 DDX56Q9NY93 547 aaKnown RBP5.63□□□□□ -1.51
VPS29-202ENST00000447578 PLA2G3Q9NZ20 509 aa5.63□□□□□ -1.51
VPS29-202ENST00000447578 CD2APQ9Y5K6 639 aa5.63□□□□□ -1.51
VPS29-202ENST00000447578 CCDC66A2RUB6 948 aa5.62□□□□□ -1.51
VPS29-202ENST00000447578 CRTAMO95727 393 aa5.62□□□□□ -1.51
VPS29-202ENST00000447578 MMEP08473 750 aa5.62□□□□□ -1.51
VPS29-202ENST00000447578 HIBADHP31937 336 aaKnown RBP5.62□□□□□ -1.51
VPS29-202ENST00000447578 RPS19P39019 145 aaKnown RBP5.62□□□□□ -1.51
VPS29-202ENST00000447578 ECE1P42892 770 aa5.62□□□□□ -1.51
VPS29-202ENST00000447578 HNRNPA0Q13151 305 aaKnown RBP5.62□□□□□ -1.51
VPS29-202ENST00000447578 LONRF2Q1L5Z9 754 aa5.62□□□□□ -1.51
VPS29-202ENST00000447578 TM4SF20Q53R12 229 aa5.62□□□□□ -1.51
VPS29-202ENST00000447578 TRIM68Q6AZZ1 485 aa5.62□□□□□ -1.51
VPS29-202ENST00000447578 FSTL4Q6MZW2 842 aa5.62□□□□□ -1.51
VPS29-202ENST00000447578 ZBTB38Q8NAP3 1195 aaPredicted RBP5.62□□□□□ -1.51
VPS29-202ENST00000447578 OR14K1Q8NGZ2 314 aa5.62□□□□□ -1.51
VPS29-202ENST00000447578 EXOC2Q96KP1 924 aa5.62□□□□□ -1.51
VPS29-202ENST00000447578 BTBD2Q9BX70 525 aa5.62□□□□□ -1.51
VPS29-202ENST00000447578 TRIM8Q9BZR9 551 aa5.62□□□□□ -1.51
VPS29-202ENST00000447578 IKZF4Q9H2S9 585 aa5.62□□□□□ -1.51
VPS29-202ENST00000447578 TLR9Q9NR96 1032 aa5.62□□□□□ -1.51
VPS29-202ENST00000447578 C11orf21Q9P2W6 132 aa5.62□□□□□ -1.51
VPS29-202ENST00000447578 PLAAQ9Y263 795 aa5.62□□□□□ -1.51
VPS29-202ENST00000447578 MROH2BQ7Z745 1585 aa5.62□□□□□ -1.51
VPS29-202ENST00000447578 SCDO00767 359 aa5.61□□□□□ -1.51
VPS29-202ENST00000447578 CLASP2O75122 1294 aaKnown RBP5.61□□□□□ -1.51
VPS29-202ENST00000447578 ACRV1P26436 265 aa5.61□□□□□ -1.51
VPS29-202ENST00000447578 CNGA1P29973 690 aa5.61□□□□□ -1.51
VPS29-202ENST00000447578 MCM7P33993 719 aa5.61□□□□□ -1.51
VPS29-202ENST00000447578 STAT5BP51692 787 aa5.61□□□□□ -1.51
VPS29-202ENST00000447578 HERVK_113P62684 666 aa5.61□□□□□ -1.51
VPS29-202ENST00000447578 SUMO1P63165 101 aaKnown RBP5.61□□□□□ -1.51
VPS29-202ENST00000447578 FNDC7Q5VTL7 733 aa5.61□□□□□ -1.51
VPS29-202ENST00000447578 KANK2Q63ZY3 851 aa5.61□□□□□ -1.51
VPS29-202ENST00000447578 ZC3H7AQ8IWR0 971 aaKnown RBP5.61□□□□□ -1.51
VPS29-202ENST00000447578 CISD2Q8N5K1 135 aaKnown RBP5.61□□□□□ -1.51
VPS29-202ENST00000447578 CACTINQ8WUQ7 758 aaKnown RBP5.61□□□□□ -1.51
VPS29-202ENST00000447578 NEU4Q8WWR8 484 aaPredicted RBP5.61□□□□□ -1.51
VPS29-202ENST00000447578 TMEM176AQ96HP8 235 aa5.61□□□□□ -1.51
VPS29-202ENST00000447578 POLR3GLQ9BT43 218 aa5.61□□□□□ -1.51
VPS29-202ENST00000447578 OR10A2Q9H208 303 aa5.61□□□□□ -1.51
VPS29-202ENST00000447578 AGO3Q9H9G7 860 aaKnown RBP5.61□□□□□ -1.51
VPS29-202ENST00000447578 FBXO10Q9UK96 956 aa5.61□□□□□ -1.51
VPS29-202ENST00000447578 FAM184BQ9ULE4 1060 aa5.61□□□□□ -1.51
VPS29-202ENST00000447578 CCDC163A0A0D9SF12 145 aa5.6□□□□□ -1.51
VPS29-202ENST00000447578 A0A0G2JNJ9 132 aa5.6□□□□□ -1.51
VPS29-202ENST00000447578 LACTBP83111 547 aaPredicted RBP5.6□□□□□ -1.51
VPS29-202ENST00000447578 MOGSQ13724 837 aa5.6□□□□□ -1.51
VPS29-202ENST00000447578 PLEKHG6Q3KR16 790 aa5.6□□□□□ -1.51
VPS29-202ENST00000447578 ZC3H12BQ5HYM0 836 aaKnown RBP5.6□□□□□ -1.51
VPS29-202ENST00000447578 KRT26Q7Z3Y9 468 aa5.6□□□□□ -1.51
VPS29-202ENST00000447578 SGMS1Q86VZ5 419 aa5.6□□□□□ -1.51
VPS29-202ENST00000447578 DHX37Q8IY37 1157 aaKnown RBP5.6□□□□□ -1.51
VPS29-202ENST00000447578 RTKN2Q8IZC4 609 aa5.6□□□□□ -1.51
VPS29-202ENST00000447578 STAG1Q8WVM7 1258 aa5.6□□□□□ -1.51
VPS29-202ENST00000447578 NAF1Q96HR8 494 aaKnown RBP5.6□□□□□ -1.51
VPS29-202ENST00000447578 IPO9Q96P70 1041 aaKnown RBP5.6□□□□□ -1.51
VPS29-202ENST00000447578 CEP89Q96ST8 783 aa5.6□□□□□ -1.51
VPS29-202ENST00000447578 OR10A5Q9H207 317 aa5.6□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms