RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 TPM1P09493 284 aa20.05■□□□□ 0.8
CCDC88C-203ENST00000389856 RPL13P26373 211 aaKnown RBP20.05■□□□□ 0.8
CCDC88C-203ENST00000389856 PRKCEQ02156 737 aa20.05■□□□□ 0.8
CCDC88C-203ENST00000389856 EEPD1Q7L9B9 569 aa20.05■□□□□ 0.8
CCDC88C-203ENST00000389856 GOLGA5Q8TBA6 731 aa20.05■□□□□ 0.8
CCDC88C-203ENST00000389856 ZNF507Q8TCN5 953 aa20.05■□□□□ 0.8
CCDC88C-203ENST00000389856 KIFAP3Q92845 792 aa20.05■□□□□ 0.8
CCDC88C-203ENST00000389856 CEP170P1Q96L14 293 aa20.05■□□□□ 0.8
CCDC88C-203ENST00000389856 CNOT6LQ96LI5 555 aaKnown RBP20.05■□□□□ 0.8
CCDC88C-203ENST00000389856 BAG1Q99933 345 aaPredicted RBP20.05■□□□□ 0.8
CCDC88C-203ENST00000389856 NRBP2Q9NSY0 501 aa20.05■□□□□ 0.8
CCDC88C-203ENST00000389856 SEPT9Q9UHD8 586 aaPredicted RBP20.05■□□□□ 0.8
CCDC88C-203ENST00000389856 MAFBQ9Y5Q3 323 aaPredicted RBP20.05■□□□□ 0.8
CCDC88C-203ENST00000389856 PHLPP2Q6ZVD8 1323 aa20.05■□□□□ 0.8
CCDC88C-203ENST00000389856 ADGRA2Q96PE1 1338 aa20.05■□□□□ 0.8
CCDC88C-203ENST00000389856 RSPH10B2B2RC85 870 aa20.04■□□□□ 0.8
CCDC88C-203ENST00000389856 IGF2BP3O00425 579 aaKnown RBP eCLIP20.04■□□□□ 0.8
CCDC88C-203ENST00000389856 RSPH10BP0C881 870 aa20.04■□□□□ 0.8
CCDC88C-203ENST00000389856 MTIF2P46199 727 aaKnown RBP20.04■□□□□ 0.8
CCDC88C-203ENST00000389856 CELF3Q5SZQ8 465 aaKnown RBP20.04■□□□□ 0.8
CCDC88C-203ENST00000389856 MAMDC4Q6UXC1 1216 aa20.04■□□□□ 0.8
CCDC88C-203ENST00000389856 APTXQ7Z2E3 356 aaKnown RBP20.04■□□□□ 0.8
CCDC88C-203ENST00000389856 CCDC60Q8IWA6 550 aaPredicted RBP20.04■□□□□ 0.8
CCDC88C-203ENST00000389856 DHX37Q8IY37 1157 aaKnown RBP20.04■□□□□ 0.8
CCDC88C-203ENST00000389856 EXOC8Q8IYI6 725 aa20.04■□□□□ 0.8
CCDC88C-203ENST00000389856 AFAP1L1Q8TED9 768 aa20.04■□□□□ 0.8
CCDC88C-203ENST00000389856 R3HDMLQ9H3Y0 253 aa20.04■□□□□ 0.8
CCDC88C-203ENST00000389856 TYW1Q9NV66 732 aaKnown RBP20.04■□□□□ 0.8
CCDC88C-203ENST00000389856 ARID2Q68CP9 1835 aa20.04■□□□□ 0.8
CCDC88C-203ENST00000389856 IGKV6D-21A0A0A0MT36 114 aa20.03■□□□□ 0.8
CCDC88C-203ENST00000389856 KIF3CO14782 793 aa20.03■□□□□ 0.8
CCDC88C-203ENST00000389856 CETN3O15182 167 aa20.03■□□□□ 0.8
CCDC88C-203ENST00000389856 COBLO75128 1261 aa20.03■□□□□ 0.8
CCDC88C-203ENST00000389856 OATP04181 439 aa20.03■□□□□ 0.8
CCDC88C-203ENST00000389856 TXNP10599 105 aaKnown RBP20.03■□□□□ 0.8
CCDC88C-203ENST00000389856 PLS3P13797 630 aa20.03■□□□□ 0.8
CCDC88C-203ENST00000389856 SCP2P22307 547 aa20.03■□□□□ 0.8
CCDC88C-203ENST00000389856 SMTNP53814 917 aa20.03■□□□□ 0.8
CCDC88C-203ENST00000389856 IRF5Q13568 498 aa20.03■□□□□ 0.8
CCDC88C-203ENST00000389856 TRIM14Q14142 442 aa20.03■□□□□ 0.8
CCDC88C-203ENST00000389856 ZCWPW2Q504Y3 356 aa20.03■□□□□ 0.8
CCDC88C-203ENST00000389856 UTP14CQ5TAP6 766 aaKnown RBP20.03■□□□□ 0.8
CCDC88C-203ENST00000389856 PPFIBP1Q86W92 1011 aa20.03■□□□□ 0.8
CCDC88C-203ENST00000389856 TMEM139Q8IV31 216 aa20.03■□□□□ 0.8
CCDC88C-203ENST00000389856 FBXO16Q8IX29 292 aaPredicted RBP20.03■□□□□ 0.8
CCDC88C-203ENST00000389856 ZNF592Q92610 1267 aa20.03■□□□□ 0.8
CCDC88C-203ENST00000389856 CPA4Q9UI42 421 aa20.03■□□□□ 0.8
CCDC88C-203ENST00000389856 TRAF3IP3Q9Y228 551 aa20.03■□□□□ 0.8
CCDC88C-203ENST00000389856 AKR1B15C9JRZ8 316 aaPredicted RBP20.02■□□□□ 0.8
CCDC88C-203ENST00000389856 H0YCG3 227 aa20.02■□□□□ 0.8
CCDC88C-203ENST00000389856 TLR2O60603 784 aa20.02■□□□□ 0.8
CCDC88C-203ENST00000389856 TOMM70O94826 608 aa20.02■□□□□ 0.8
CCDC88C-203ENST00000389856 ALDH1A1P00352 501 aa20.02■□□□□ 0.8
CCDC88C-203ENST00000389856 PRKCSHP14314 528 aaPredicted RBP20.02■□□□□ 0.8
CCDC88C-203ENST00000389856 PBX1P40424 430 aa20.02■□□□□ 0.8
CCDC88C-203ENST00000389856 SLC26A2P50443 739 aa20.02■□□□□ 0.8
CCDC88C-203ENST00000389856 ETF1P62495 437 aaKnown RBP20.02■□□□□ 0.8
CCDC88C-203ENST00000389856 LAMC2Q13753 1193 aa20.02■□□□□ 0.8
CCDC88C-203ENST00000389856 ANO5Q75V66 913 aa20.02■□□□□ 0.8
CCDC88C-203ENST00000389856 HS2ST1Q7LGA3 356 aa20.02■□□□□ 0.8
CCDC88C-203ENST00000389856 NELFCDQ8IXH7 590 aa20.02■□□□□ 0.8
CCDC88C-203ENST00000389856 REM2Q8IYK8 340 aaPredicted RBP20.02■□□□□ 0.8
CCDC88C-203ENST00000389856 ZNF710Q8N1W2 664 aa20.02■□□□□ 0.8
CCDC88C-203ENST00000389856 TC2NQ8N9U0 490 aa20.02■□□□□ 0.8
CCDC88C-203ENST00000389856 ERO1AQ96HE7 468 aa20.02■□□□□ 0.8
CCDC88C-203ENST00000389856 KCTD10Q9H3F6 313 aa20.02■□□□□ 0.8
CCDC88C-203ENST00000389856 L2HGDHQ9H9P8 463 aa20.02■□□□□ 0.8
CCDC88C-203ENST00000389856 ATP6V0A4Q9HBG4 840 aa20.02■□□□□ 0.8
CCDC88C-203ENST00000389856 CYP26B1Q9NR63 512 aa20.02■□□□□ 0.8
CCDC88C-203ENST00000389856 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP20.02■□□□□ 0.8
CCDC88C-203ENST00000389856 LGALS16A8MUM7 142 aa20.02■□□□□ 0.79
CCDC88C-203ENST00000389856 DNM2P50570 870 aa20.02■□□□□ 0.79
CCDC88C-203ENST00000389856 STAT5BP51692 787 aa20.02■□□□□ 0.79
CCDC88C-203ENST00000389856 LY6KQ17RY6 165 aa20.02■□□□□ 0.79
CCDC88C-203ENST00000389856 GLIPR1L2Q4G1C9 344 aa20.02■□□□□ 0.79
CCDC88C-203ENST00000389856 FKBP15Q5T1M5 1219 aa20.02■□□□□ 0.79
CCDC88C-203ENST00000389856 CCDC62Q6P9F0 684 aa20.02■□□□□ 0.79
CCDC88C-203ENST00000389856 ZNF720Q7Z2F6 126 aa20.02■□□□□ 0.79
CCDC88C-203ENST00000389856 IRF2BP1Q8IU81 584 aa20.02■□□□□ 0.79
CCDC88C-203ENST00000389856 TUBGCP2Q9BSJ2 902 aa20.02■□□□□ 0.79
CCDC88C-203ENST00000389856 TMEM206Q9H813 350 aa20.02■□□□□ 0.79
CCDC88C-203ENST00000389856 CDKN2AIPQ9NXV6 580 aaPredicted RBP20.02■□□□□ 0.79
CCDC88C-203ENST00000389856 TAB2Q9NYJ8 693 aa20.02■□□□□ 0.79
CCDC88C-203ENST00000389856 CGNQ9P2M7 1197 aaKnown RBP20.02■□□□□ 0.79
CCDC88C-203ENST00000389856 GSTTP1A0A1W2PQM5 241 aa20.01■□□□□ 0.79
CCDC88C-203ENST00000389856 RBM47A0AV96 593 aaKnown RBP20.01■□□□□ 0.79
CCDC88C-203ENST00000389856 ZNF862O60290 1169 aa20.01■□□□□ 0.79
CCDC88C-203ENST00000389856 MCM3APO60318 1980 aa20.01■□□□□ 0.79
CCDC88C-203ENST00000389856 MYBP10242 640 aa20.01■□□□□ 0.79
CCDC88C-203ENST00000389856 RFC5P40937 340 aa20.01■□□□□ 0.79
CCDC88C-203ENST00000389856 RTP1P59025 263 aa20.01■□□□□ 0.79
CCDC88C-203ENST00000389856 MAPK7Q13164 816 aa20.01■□□□□ 0.79
CCDC88C-203ENST00000389856 DMP1Q13316 513 aaPredicted RBP20.01■□□□□ 0.79
CCDC88C-203ENST00000389856 CCDC40Q4G0X9 1142 aa20.01■□□□□ 0.79
CCDC88C-203ENST00000389856 FAM102BQ5T8I3 360 aa20.01■□□□□ 0.79
CCDC88C-203ENST00000389856 PLA2G4FQ68DD2 849 aa20.01■□□□□ 0.79
CCDC88C-203ENST00000389856 GLIS3Q8NEA6 775 aa20.01■□□□□ 0.79
CCDC88C-203ENST00000389856 HVCN1Q96D96 273 aa20.01■□□□□ 0.79
CCDC88C-203ENST00000389856 MAML3Q96JK9 1138 aa20.01■□□□□ 0.79
CCDC88C-203ENST00000389856 SPATA33Q96N06 139 aa20.01■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms