RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 DCUN1D1Q96GG9 259 aa9.94□□□□□ -0.82
LIMCH1-202ENST00000381753 FZD1Q9UP38 647 aa9.94□□□□□ -0.82
LIMCH1-202ENST00000381753 HEMK1Q9Y5R4 338 aaPredicted RBP9.94□□□□□ -0.82
LIMCH1-202ENST00000381753 SAT1P21673 171 aa9.94□□□□□ -0.82
LIMCH1-202ENST00000381753 MXRA7P84157 204 aa9.94□□□□□ -0.82
LIMCH1-202ENST00000381753 SHDQ96IW2 340 aa9.94□□□□□ -0.82
LIMCH1-202ENST00000381753 TNIP3Q96KP6 325 aa9.94□□□□□ -0.82
LIMCH1-202ENST00000381753 SLC15A5A6NIM6 579 aa9.94□□□□□ -0.82
LIMCH1-202ENST00000381753 PRKCBP05771 671 aa9.94□□□□□ -0.82
LIMCH1-202ENST00000381753 PSMC5P62195 406 aa9.94□□□□□ -0.82
LIMCH1-202ENST00000381753 ZNF699Q32M78 642 aa9.94□□□□□ -0.82
LIMCH1-202ENST00000381753 JAMLQ86YT9 394 aa9.94□□□□□ -0.82
LIMCH1-202ENST00000381753 TRPM4Q8TD43 1214 aa9.94□□□□□ -0.82
LIMCH1-202ENST00000381753 CFAP36Q96G28 342 aa9.94□□□□□ -0.82
LIMCH1-202ENST00000381753 PIH1D3Q9NQM4 214 aaKnown RBP9.94□□□□□ -0.82
LIMCH1-202ENST00000381753 AASDHPPTQ9NRN7 309 aa9.94□□□□□ -0.82
LIMCH1-202ENST00000381753 WNT10BO00744 389 aa9.94□□□□□ -0.82
LIMCH1-202ENST00000381753 PCDH8O95206 1070 aa9.94□□□□□ -0.82
LIMCH1-202ENST00000381753 GPR161Q8N6U8 529 aaKnown RBP9.94□□□□□ -0.82
LIMCH1-202ENST00000381753 CRACR2AQ9BSW2 395 aa9.94□□□□□ -0.82
LIMCH1-202ENST00000381753 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.94□□□□□ -0.82
LIMCH1-202ENST00000381753 BEX3Q00994 111 aa9.93□□□□□ -0.82
LIMCH1-202ENST00000381753 MXD4Q14582 209 aaPredicted RBP9.93□□□□□ -0.82
LIMCH1-202ENST00000381753 BMP2KLQ5H9B9 411 aa9.93□□□□□ -0.82
LIMCH1-202ENST00000381753 UBE2Q2Q8WVN8 375 aa9.93□□□□□ -0.82
LIMCH1-202ENST00000381753 H7C1W4 665 aa9.93□□□□□ -0.82
LIMCH1-202ENST00000381753 GSTA1P08263 222 aa9.93□□□□□ -0.82
LIMCH1-202ENST00000381753 GSTA2P09210 222 aa9.93□□□□□ -0.82
LIMCH1-202ENST00000381753 ZBTB48P10074 688 aaPredicted RBP9.93□□□□□ -0.82
LIMCH1-202ENST00000381753 NLRP11P59045 1033 aaKnown RBP9.93□□□□□ -0.82
LIMCH1-202ENST00000381753 SATB1Q01826 763 aa9.93□□□□□ -0.82
LIMCH1-202ENST00000381753 CHRDL2Q6WN34 429 aa9.93□□□□□ -0.82
LIMCH1-202ENST00000381753 RASGRP4Q8TDF6 673 aa9.93□□□□□ -0.82
LIMCH1-202ENST00000381753 EDEM3Q9BZQ6 932 aa9.93□□□□□ -0.82
LIMCH1-202ENST00000381753 DCTPP1Q9H773 170 aa9.93□□□□□ -0.82
LIMCH1-202ENST00000381753 SLTMQ9NWH9 1034 aaKnown RBP eCLIP9.93□□□□□ -0.82
LIMCH1-202ENST00000381753 AGLP35573 1532 aa9.93□□□□□ -0.82
LIMCH1-202ENST00000381753 HOXC6P09630 235 aa9.93□□□□□ -0.82
LIMCH1-202ENST00000381753 ODC1P11926 461 aa9.93□□□□□ -0.82
LIMCH1-202ENST00000381753 ALDH3A1P30838 453 aa9.93□□□□□ -0.82
LIMCH1-202ENST00000381753 CDH18Q13634 790 aa9.93□□□□□ -0.82
LIMCH1-202ENST00000381753 MFSD10Q14728 455 aa9.93□□□□□ -0.82
LIMCH1-202ENST00000381753 CCDC149Q6ZUS6 474 aa9.93□□□□□ -0.82
LIMCH1-202ENST00000381753 GET4Q7L5D6 327 aaPredicted RBP9.93□□□□□ -0.82
LIMCH1-202ENST00000381753 PARVGQ9HBI0 331 aa9.93□□□□□ -0.82
LIMCH1-202ENST00000381753 FAM217BQ9NTX9 383 aaPredicted RBP9.93□□□□□ -0.82
LIMCH1-202ENST00000381753 ADGRB2O60241 1585 aa9.93□□□□□ -0.82
LIMCH1-202ENST00000381753 ADGRL2O95490 1459 aa9.93□□□□□ -0.82
LIMCH1-202ENST00000381753 H7C0C1 242 aa9.93□□□□□ -0.82
LIMCH1-202ENST00000381753 QARSP47897 775 aaKnown RBP9.93□□□□□ -0.82
LIMCH1-202ENST00000381753 ATP5OP48047 213 aa9.93□□□□□ -0.82
LIMCH1-202ENST00000381753 TPD52P55327 224 aaPredicted RBP9.93□□□□□ -0.82
LIMCH1-202ENST00000381753 PDXDC1Q6P996 788 aa9.93□□□□□ -0.82
LIMCH1-202ENST00000381753 POLLQ9UGP5 575 aa9.93□□□□□ -0.82
LIMCH1-202ENST00000381753 MCM3P25205 808 aa9.93□□□□□ -0.82
LIMCH1-202ENST00000381753 EFNA5P52803 228 aa9.93□□□□□ -0.82
LIMCH1-202ENST00000381753 UBASH3AP57075 661 aa9.93□□□□□ -0.82
LIMCH1-202ENST00000381753 SZRD1Q7Z422 152 aa9.93□□□□□ -0.82
LIMCH1-202ENST00000381753 MAATS1Q7Z4T9 603 aa9.93□□□□□ -0.82
LIMCH1-202ENST00000381753 ADCK2Q7Z695 626 aa9.93□□□□□ -0.82
LIMCH1-202ENST00000381753 SPATA24Q86W54 205 aa9.93□□□□□ -0.82
LIMCH1-202ENST00000381753 AOPEPQ8N6M6 819 aa9.93□□□□□ -0.82
LIMCH1-202ENST00000381753 MRRFQ96E11 262 aaKnown RBP9.93□□□□□ -0.82
LIMCH1-202ENST00000381753 SENP2Q9HC62 589 aa9.93□□□□□ -0.82
LIMCH1-202ENST00000381753 GOLGA8IPA6NC78 632 aa9.92□□□□□ -0.82
LIMCH1-202ENST00000381753 GOLGA8JA6NMD2 632 aa9.92□□□□□ -0.82
LIMCH1-202ENST00000381753 LZTS3O60299 673 aaPredicted RBP9.92□□□□□ -0.82
LIMCH1-202ENST00000381753 CD4P01730 458 aa9.92□□□□□ -0.82
LIMCH1-202ENST00000381753 PPM1AP35813 382 aa9.92□□□□□ -0.82
LIMCH1-202ENST00000381753 SGCGQ13326 291 aa9.92□□□□□ -0.82
LIMCH1-202ENST00000381753 TMCO3Q6UWJ1 677 aa9.92□□□□□ -0.82
LIMCH1-202ENST00000381753 RFX6Q8HWS3 928 aa9.92□□□□□ -0.82
LIMCH1-202ENST00000381753 TESK2Q96S53 571 aa9.92□□□□□ -0.82
LIMCH1-202ENST00000381753 EXO5Q9H790 373 aa9.92□□□□□ -0.82
LIMCH1-202ENST00000381753 HACD3Q9P035 362 aa9.92□□□□□ -0.82
LIMCH1-202ENST00000381753 ARMCX3Q9UH62 379 aaPredicted RBP9.92□□□□□ -0.82
LIMCH1-202ENST00000381753 NR2E1Q9Y466 385 aa9.92□□□□□ -0.82
LIMCH1-202ENST00000381753 CCDC183Q5T5S1 534 aa9.92□□□□□ -0.82
LIMCH1-202ENST00000381753 HEATR6Q6AI08 1181 aaKnown RBP9.92□□□□□ -0.82
LIMCH1-202ENST00000381753 ZNF280DQ6N043 979 aa9.92□□□□□ -0.82
LIMCH1-202ENST00000381753 PLEKHM2Q8IWE5 1019 aa9.92□□□□□ -0.82
LIMCH1-202ENST00000381753 CAMKK2Q96RR4 588 aa9.92□□□□□ -0.82
LIMCH1-202ENST00000381753 TRPV6Q9H1D0 765 aa9.92□□□□□ -0.82
LIMCH1-202ENST00000381753 TRPM5Q9NZQ8 1165 aa9.92□□□□□ -0.82
LIMCH1-202ENST00000381753 ANAPC4Q9UJX5 808 aa9.92□□□□□ -0.82
LIMCH1-202ENST00000381753 ASAP2O43150 1006 aa9.92□□□□□ -0.82
LIMCH1-202ENST00000381753 NPTXRO95502 500 aa9.92□□□□□ -0.82
LIMCH1-202ENST00000381753 ALCAMQ13740 583 aa9.92□□□□□ -0.82
LIMCH1-202ENST00000381753 MAP9Q49MG5 647 aa9.92□□□□□ -0.82
LIMCH1-202ENST00000381753 C10orf120Q5SQS8 335 aa9.92□□□□□ -0.82
LIMCH1-202ENST00000381753 MYSM1Q5VVJ2 828 aa9.92□□□□□ -0.82
LIMCH1-202ENST00000381753 ILDR2Q71H61 639 aa9.92□□□□□ -0.82
LIMCH1-202ENST00000381753 PALB2Q86YC2 1186 aa9.92□□□□□ -0.82
LIMCH1-202ENST00000381753 SCG3Q8WXD2 468 aaKnown RBP9.92□□□□□ -0.82
LIMCH1-202ENST00000381753 EAF2Q96CJ1 260 aaPredicted RBP9.92□□□□□ -0.82
LIMCH1-202ENST00000381753 SHROOM2Q13796 1616 aa9.92□□□□□ -0.82
LIMCH1-202ENST00000381753 ADH1AP07327 375 aa9.92□□□□□ -0.82
LIMCH1-202ENST00000381753 PCSK1P29120 753 aa9.92□□□□□ -0.82
LIMCH1-202ENST00000381753 GCKP35557 465 aa9.92□□□□□ -0.82
LIMCH1-202ENST00000381753 TCF7P36402 384 aaPredicted RBP9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms