RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 LOC102724428A0A0B4J2F2 783 aa17.08■□□□□ 0.33
COL17A1-202ENST00000369733 ACTN1P12814 892 aa17.08■□□□□ 0.33
COL17A1-202ENST00000369733 CHN1P15882 459 aa17.08■□□□□ 0.33
COL17A1-202ENST00000369733 HSPA9P38646 679 aaKnown RBP17.08■□□□□ 0.33
COL17A1-202ENST00000369733 SIK1P57059 783 aa17.08■□□□□ 0.33
COL17A1-202ENST00000369733 DLGAP5Q15398 846 aa17.08■□□□□ 0.33
COL17A1-202ENST00000369733 DOK7Q18PE1 504 aa17.08■□□□□ 0.33
COL17A1-202ENST00000369733 ANLNQ9NQW6 1124 aa17.08■□□□□ 0.33
COL17A1-202ENST00000369733 SERPINB13Q9UIV8 391 aa17.08■□□□□ 0.33
COL17A1-202ENST00000369733 TMPRSS15P98073 1019 aa17.08■□□□□ 0.32
COL17A1-202ENST00000369733 YY1AP1Q9H869 796 aa17.08■□□□□ 0.32
COL17A1-202ENST00000369733 DCTN4Q9UJW0 460 aa17.08■□□□□ 0.32
COL17A1-202ENST00000369733 RASSF10A6NK89 507 aa17.08■□□□□ 0.32
COL17A1-202ENST00000369733 GABPAQ06546 454 aa17.08■□□□□ 0.32
COL17A1-202ENST00000369733 DYNC1I2Q13409 638 aaKnown RBP17.08■□□□□ 0.32
COL17A1-202ENST00000369733 CYFIP2Q96F07 1278 aa17.08■□□□□ 0.32
COL17A1-202ENST00000369733 TOM1O60784 492 aa17.07■□□□□ 0.32
COL17A1-202ENST00000369733 TJP3O95049 919 aa17.07■□□□□ 0.32
COL17A1-202ENST00000369733 ATG9AQ7Z3C6 839 aa17.07■□□□□ 0.32
COL17A1-202ENST00000369733 SPATA21Q7Z572 469 aa17.07■□□□□ 0.32
COL17A1-202ENST00000369733 METTL13Q8N6R0 699 aa17.07■□□□□ 0.32
COL17A1-202ENST00000369733 SDCCAG3Q96C92 435 aa17.07■□□□□ 0.32
COL17A1-202ENST00000369733 SERPINI1Q99574 410 aa17.07■□□□□ 0.32
COL17A1-202ENST00000369733 TMEM47Q9BQJ4 181 aa17.07■□□□□ 0.32
COL17A1-202ENST00000369733 SEPT9Q9UHD8 586 aaPredicted RBP17.07■□□□□ 0.32
COL17A1-202ENST00000369733 RNF17Q9BXT8 1623 aaKnown RBP17.07■□□□□ 0.32
COL17A1-202ENST00000369733 PXDNLA1KZ92 1463 aa17.07■□□□□ 0.32
COL17A1-202ENST00000369733 FGFR4P22455 802 aa17.07■□□□□ 0.32
COL17A1-202ENST00000369733 KNOP1Q1ED39 458 aaKnown RBP17.07■□□□□ 0.32
COL17A1-202ENST00000369733 TTC25Q96NG3 672 aa17.07■□□□□ 0.32
COL17A1-202ENST00000369733 EFHD1Q9BUP0 239 aa17.07■□□□□ 0.32
COL17A1-202ENST00000369733 SETBP1Q9Y6X0 1596 aa17.07■□□□□ 0.32
COL17A1-202ENST00000369733 TCP11X1B4DZS4 312 aa17.07■□□□□ 0.32
COL17A1-202ENST00000369733 COPEO14579 308 aa17.07■□□□□ 0.32
COL17A1-202ENST00000369733 SEC24CP53992 1094 aa17.07■□□□□ 0.32
COL17A1-202ENST00000369733 PHEXP78562 749 aa17.07■□□□□ 0.32
COL17A1-202ENST00000369733 MKRN3Q13064 507 aaKnown RBP17.07■□□□□ 0.32
COL17A1-202ENST00000369733 MMGT1Q8N4V1 131 aa17.07■□□□□ 0.32
COL17A1-202ENST00000369733 OR2W6PQ8NHA6 318 aa17.07■□□□□ 0.32
COL17A1-202ENST00000369733 GRAMD1AQ96CP6 724 aa17.07■□□□□ 0.32
COL17A1-202ENST00000369733 SH3GL3Q99963 347 aa17.07■□□□□ 0.32
COL17A1-202ENST00000369733 CFLARO15519 480 aa17.07■□□□□ 0.32
COL17A1-202ENST00000369733 DRAP1Q14919 205 aaPredicted RBP17.07■□□□□ 0.32
COL17A1-202ENST00000369733 C1orf146Q5VVC0 180 aa17.07■□□□□ 0.32
COL17A1-202ENST00000369733 USP49Q70CQ1 688 aa17.07■□□□□ 0.32
COL17A1-202ENST00000369733 DRC3Q9H069 523 aa17.07■□□□□ 0.32
COL17A1-202ENST00000369733 TULP4Q9NRJ4 1543 aa17.07■□□□□ 0.32
COL17A1-202ENST00000369733 SNAP23O00161 211 aa17.07■□□□□ 0.32
COL17A1-202ENST00000369733 AGTP01019 485 aa17.07■□□□□ 0.32
COL17A1-202ENST00000369733 ARL4CP56559 192 aa17.07■□□□□ 0.32
COL17A1-202ENST00000369733 TBC1D9BQ66K14 1250 aa17.07■□□□□ 0.32
COL17A1-202ENST00000369733 RNPC3Q96LT9 517 aaKnown RBP17.07■□□□□ 0.32
COL17A1-202ENST00000369733 KANSL2Q9H9L4 492 aa17.07■□□□□ 0.32
COL17A1-202ENST00000369733 SLC40A1Q9NP59 571 aa17.07■□□□□ 0.32
COL17A1-202ENST00000369733 TMEM260Q9NX78 707 aa17.07■□□□□ 0.32
COL17A1-202ENST00000369733 BARHL2Q9NY43 387 aa17.07■□□□□ 0.32
COL17A1-202ENST00000369733 SEC23IPQ9Y6Y8 1000 aaKnown RBP17.07■□□□□ 0.32
COL17A1-202ENST00000369733 DIAPH2O60879 1101 aa17.06■□□□□ 0.32
COL17A1-202ENST00000369733 ALCAMQ13740 583 aa17.06■□□□□ 0.32
COL17A1-202ENST00000369733 GRM4Q14833 912 aa17.06■□□□□ 0.32
COL17A1-202ENST00000369733 SUSD4Q5VX71 490 aa17.06■□□□□ 0.32
COL17A1-202ENST00000369733 ZNF564Q8TBZ8 553 aaPredicted RBP17.06■□□□□ 0.32
COL17A1-202ENST00000369733 DEPDC1BQ8WUY9 529 aa17.06■□□□□ 0.32
COL17A1-202ENST00000369733 RFFLQ8WZ73 363 aa17.06■□□□□ 0.32
COL17A1-202ENST00000369733 G3BP2Q9UN86 482 aaKnown RBP17.06■□□□□ 0.32
COL17A1-202ENST00000369733 ARL2BPQ9Y2Y0 163 aa17.06■□□□□ 0.32
COL17A1-202ENST00000369733 SCINQ9Y6U3 715 aa17.06■□□□□ 0.32
COL17A1-202ENST00000369733 CAPN9O14815 690 aa17.06■□□□□ 0.32
COL17A1-202ENST00000369733 ART3Q13508 389 aa17.06■□□□□ 0.32
COL17A1-202ENST00000369733 HLFQ16534 295 aa17.06■□□□□ 0.32
COL17A1-202ENST00000369733 CXorf38Q8TB03 319 aa17.06■□□□□ 0.32
COL17A1-202ENST00000369733 IGDCC4Q8TDY8 1250 aa17.06■□□□□ 0.32
COL17A1-202ENST00000369733 PHF20Q9BVI0 1012 aa17.06■□□□□ 0.32
COL17A1-202ENST00000369733 NUP85Q9BW27 656 aa17.06■□□□□ 0.32
COL17A1-202ENST00000369733 BATF3Q9NR55 127 aa17.06■□□□□ 0.32
COL17A1-202ENST00000369733 USP17L5A8MUK1 530 aa17.06■□□□□ 0.32
COL17A1-202ENST00000369733 ZRANB2O95218 330 aaKnown RBP eCLIP17.06■□□□□ 0.32
COL17A1-202ENST00000369733 ORC2Q13416 577 aaPredicted RBP17.06■□□□□ 0.32
COL17A1-202ENST00000369733 SLC18A3Q16572 532 aa17.06■□□□□ 0.32
COL17A1-202ENST00000369733 PTGISQ16647 500 aa17.06■□□□□ 0.32
COL17A1-202ENST00000369733 AGBL2Q5U5Z8 902 aa17.06■□□□□ 0.32
COL17A1-202ENST00000369733 PIGOQ8TEQ8 1089 aa17.06■□□□□ 0.32
COL17A1-202ENST00000369733 RIOK1Q9BRS2 568 aaKnown RBP17.06■□□□□ 0.32
COL17A1-202ENST00000369733 H3BQF6 201 aa17.06■□□□□ 0.32
COL17A1-202ENST00000369733 TTI1O43156 1089 aa17.06■□□□□ 0.32
COL17A1-202ENST00000369733 CARSP49589 748 aaKnown RBP17.06■□□□□ 0.32
COL17A1-202ENST00000369733 GLYCTKQ8IVS8 523 aa17.06■□□□□ 0.32
COL17A1-202ENST00000369733 TRIML2Q8N7C3 387 aa17.06■□□□□ 0.32
COL17A1-202ENST00000369733 SNF8Q96H20 258 aa17.06■□□□□ 0.32
COL17A1-202ENST00000369733 XPO6Q96QU8 1125 aaKnown RBP17.06■□□□□ 0.32
COL17A1-202ENST00000369733 POTEB3A0JP26 581 aa17.05■□□□□ 0.32
COL17A1-202ENST00000369733 POTECB2RU33 542 aa17.05■□□□□ 0.32
COL17A1-202ENST00000369733 KRT37O76014 449 aa17.05■□□□□ 0.32
COL17A1-202ENST00000369733 FAM107AO95990 144 aa17.05■□□□□ 0.32
COL17A1-202ENST00000369733 ALDH1B1P30837 517 aa17.05■□□□□ 0.32
COL17A1-202ENST00000369733 MDM2Q00987 491 aaPredicted RBP17.05■□□□□ 0.32
COL17A1-202ENST00000369733 BIRC2Q13490 618 aa17.05■□□□□ 0.32
COL17A1-202ENST00000369733 RABL6Q3YEC7 729 aaPredicted RBP17.05■□□□□ 0.32
COL17A1-202ENST00000369733 POTEBQ6S5H4 581 aa17.05■□□□□ 0.32
COL17A1-202ENST00000369733 ATP6V0A1Q93050 837 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms