RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 MEIS1O00470 390 aa12.35□□□□□ -0.43
VPS39-201ENST00000318006 HNRNPDLO14979 420 aaKnown RBP12.35□□□□□ -0.43
VPS39-201ENST00000318006 GFPT2O94808 682 aa12.35□□□□□ -0.43
VPS39-201ENST00000318006 HAUS5O94927 633 aa12.35□□□□□ -0.43
VPS39-201ENST00000318006 PLA2G4BP0C869 781 aa12.35□□□□□ -0.43
VPS39-201ENST00000318006 EEF1B2P24534 225 aaKnown RBP12.35□□□□□ -0.43
VPS39-201ENST00000318006 HNRNPH1P31943 449 aaKnown RBP12.35□□□□□ -0.43
VPS39-201ENST00000318006 ATP5OP48047 213 aa12.35□□□□□ -0.43
VPS39-201ENST00000318006 CDR2Q01850 454 aa12.35□□□□□ -0.43
VPS39-201ENST00000318006 LRRC63Q05C16 580 aa12.35□□□□□ -0.43
VPS39-201ENST00000318006 CUL3Q13618 768 aa12.35□□□□□ -0.43
VPS39-201ENST00000318006 STOX1Q6ZVD7 989 aa12.35□□□□□ -0.43
VPS39-201ENST00000318006 IL17RAQ96F46 866 aa12.35□□□□□ -0.43
VPS39-201ENST00000318006 ANO3Q9BYT9 981 aa12.35□□□□□ -0.43
VPS39-201ENST00000318006 EMILIN3Q9NT22 766 aa12.35□□□□□ -0.43
VPS39-201ENST00000318006 PNPLA7Q6ZV29 1317 aa12.35□□□□□ -0.43
VPS39-201ENST00000318006 ESYT3A0FGR9 886 aa12.35□□□□□ -0.43
VPS39-201ENST00000318006 KCNQ2O43526 872 aa12.35□□□□□ -0.43
VPS39-201ENST00000318006 STX1BP61266 288 aa12.35□□□□□ -0.43
VPS39-201ENST00000318006 TTBK2Q6IQ55 1244 aa12.35□□□□□ -0.43
VPS39-201ENST00000318006 FAM84BQ96KN1 310 aaPredicted RBP12.35□□□□□ -0.43
VPS39-201ENST00000318006 TNNC2P02585 160 aa12.35□□□□□ -0.43
VPS39-201ENST00000318006 PCYT1AP49585 367 aa12.35□□□□□ -0.43
VPS39-201ENST00000318006 PMS2P54278 862 aa12.35□□□□□ -0.43
VPS39-201ENST00000318006 FAM160B2Q86V87 743 aa12.35□□□□□ -0.43
VPS39-201ENST00000318006 SLC5A4Q9NY91 659 aa12.35□□□□□ -0.43
VPS39-201ENST00000318006 DIAPH2O60879 1101 aa12.35□□□□□ -0.43
VPS39-201ENST00000318006 PLS3P13797 630 aa12.35□□□□□ -0.43
VPS39-201ENST00000318006 INPP1P49441 399 aa12.35□□□□□ -0.43
VPS39-201ENST00000318006 MDM2Q00987 491 aaPredicted RBP12.35□□□□□ -0.43
VPS39-201ENST00000318006 EXOSC10Q01780 885 aaKnown RBP12.35□□□□□ -0.43
VPS39-201ENST00000318006 PPARGC1AQ9UBK2 798 aaKnown RBP12.35□□□□□ -0.43
VPS39-201ENST00000318006 UBN2Q6ZU65 1347 aa12.35□□□□□ -0.43
VPS39-201ENST00000318006 IQANK1A0A1B0GTG1 560 aa12.34□□□□□ -0.43
VPS39-201ENST00000318006 M0QZ92 97 aa12.34□□□□□ -0.43
VPS39-201ENST00000318006 NMT2O60551 498 aa12.34□□□□□ -0.43
VPS39-201ENST00000318006 TOM1L1O75674 476 aa12.34□□□□□ -0.43
VPS39-201ENST00000318006 AP2B1P63010 937 aa12.34□□□□□ -0.43
VPS39-201ENST00000318006 FAM160B1Q5W0V3 765 aa12.34□□□□□ -0.43
VPS39-201ENST00000318006 RINT1Q6NUQ1 792 aa12.34□□□□□ -0.43
VPS39-201ENST00000318006 SCYL2Q6P3W7 929 aa12.34□□□□□ -0.43
VPS39-201ENST00000318006 NFRKBQ6P4R8 1299 aa12.34□□□□□ -0.43
VPS39-201ENST00000318006 C16orf87Q6PH81 154 aa12.34□□□□□ -0.43
VPS39-201ENST00000318006 SLC44A5Q8NCS7 719 aa12.34□□□□□ -0.43
VPS39-201ENST00000318006 OXER1Q8TDS5 423 aa12.34□□□□□ -0.43
VPS39-201ENST00000318006 GRAMD1AQ96CP6 724 aa12.34□□□□□ -0.43
VPS39-201ENST00000318006 NT5C1BQ96P26 610 aa12.34□□□□□ -0.43
VPS39-201ENST00000318006 TRIM56Q9BRZ2 755 aaKnown RBP12.34□□□□□ -0.43
VPS39-201ENST00000318006 SLC4A7Q9Y6M7 1214 aa12.34□□□□□ -0.43
VPS39-201ENST00000318006 SPATA31D1Q6ZQQ2 1576 aa12.34□□□□□ -0.43
VPS39-201ENST00000318006 USP17L5A8MUK1 530 aa12.34□□□□□ -0.43
VPS39-201ENST00000318006 RASA4BC9J798 803 aa12.34□□□□□ -0.43
VPS39-201ENST00000318006 RASA4O43374 803 aa12.34□□□□□ -0.43
VPS39-201ENST00000318006 ART3Q13508 389 aa12.34□□□□□ -0.43
VPS39-201ENST00000318006 C1orf146Q5VVC0 180 aa12.34□□□□□ -0.43
VPS39-201ENST00000318006 RTKN2Q8IZC4 609 aa12.34□□□□□ -0.43
VPS39-201ENST00000318006 GFM2Q969S9 779 aaKnown RBP12.34□□□□□ -0.43
VPS39-201ENST00000318006 NDE1Q9NXR1 346 aa12.34□□□□□ -0.43
VPS39-201ENST00000318006 MROH7-TTC4A0A0A0MT08 1334 aa12.34□□□□□ -0.43
VPS39-201ENST00000318006 CRKP46108 304 aa12.34□□□□□ -0.43
VPS39-201ENST00000318006 IQCB1Q15051 598 aa12.34□□□□□ -0.43
VPS39-201ENST00000318006 TRIP13Q15645 432 aaPredicted RBP12.34□□□□□ -0.43
VPS39-201ENST00000318006 CENPUQ71F23 418 aa12.34□□□□□ -0.43
VPS39-201ENST00000318006 PODNQ7Z5L7 613 aa12.34□□□□□ -0.43
VPS39-201ENST00000318006 MAP7D3Q8IWC1 876 aa12.34□□□□□ -0.43
VPS39-201ENST00000318006 RHOT2Q8IXI1 618 aa12.34□□□□□ -0.43
VPS39-201ENST00000318006 SPATA4Q8NEY3 305 aa12.34□□□□□ -0.43
VPS39-201ENST00000318006 ACCSQ96QU6 501 aa12.34□□□□□ -0.43
VPS39-201ENST00000318006 ADPGKQ9BRR6 497 aa12.34□□□□□ -0.43
VPS39-201ENST00000318006 UTYO14607 1347 aa12.34□□□□□ -0.43
VPS39-201ENST00000318006 ATP1A1P05023 1023 aaKnown RBP12.34□□□□□ -0.43
VPS39-201ENST00000318006 TMEM191BP0C7N4 346 aa12.34□□□□□ -0.43
VPS39-201ENST00000318006 PPM1FP49593 454 aaPredicted RBP12.34□□□□□ -0.43
VPS39-201ENST00000318006 MKRN3Q13064 507 aaKnown RBP12.34□□□□□ -0.43
VPS39-201ENST00000318006 TEX9Q8N6V9 391 aa12.34□□□□□ -0.43
VPS39-201ENST00000318006 HIPK4Q8NE63 616 aa12.34□□□□□ -0.43
VPS39-201ENST00000318006 GCNT4Q9P109 453 aa12.34□□□□□ -0.43
VPS39-201ENST00000318006 SEPT9Q9UHD8 586 aaPredicted RBP12.34□□□□□ -0.43
VPS39-201ENST00000318006 TTLL3Q9Y4R7 772 aa12.34□□□□□ -0.43
VPS39-201ENST00000318006 CEMIPQ8WUJ3 1361 aa12.33□□□□□ -0.43
VPS39-201ENST00000318006 NCF2P19878 526 aaPredicted RBP12.33□□□□□ -0.44
VPS39-201ENST00000318006 IRAK1P51617 712 aa12.33□□□□□ -0.44
VPS39-201ENST00000318006 OCA2Q04671 838 aa12.33□□□□□ -0.44
VPS39-201ENST00000318006 KLC1Q07866 573 aa12.33□□□□□ -0.44
VPS39-201ENST00000318006 AP3B2Q13367 1082 aa12.33□□□□□ -0.44
VPS39-201ENST00000318006 PLCB4Q15147 1175 aa12.33□□□□□ -0.44
VPS39-201ENST00000318006 SUPT20HL1Q3ZLR7 823 aa12.33□□□□□ -0.44
VPS39-201ENST00000318006 EPM2AIP1Q7L775 607 aaPredicted RBP12.33□□□□□ -0.44
VPS39-201ENST00000318006 TRIM50Q86XT4 487 aa12.33□□□□□ -0.44
VPS39-201ENST00000318006 CRLF3Q8IUI8 442 aa12.33□□□□□ -0.44
VPS39-201ENST00000318006 TTLL6Q8N841 843 aa12.33□□□□□ -0.44
VPS39-201ENST00000318006 DCAF4Q8WV16 495 aa12.33□□□□□ -0.44
VPS39-201ENST00000318006 SLC7A3Q8WY07 619 aa12.33□□□□□ -0.44
VPS39-201ENST00000318006 CDHR1Q96JP9 859 aa12.33□□□□□ -0.44
VPS39-201ENST00000318006 SYNGAP1Q96PV0 1343 aa12.33□□□□□ -0.44
VPS39-201ENST00000318006 MIF4GDA9UHW6 222 aaKnown RBP12.33□□□□□ -0.44
VPS39-201ENST00000318006 WDR46O15213 610 aaKnown RBP12.33□□□□□ -0.44
VPS39-201ENST00000318006 CLIC2O15247 247 aa12.33□□□□□ -0.44
VPS39-201ENST00000318006 CPP00450 1065 aa12.33□□□□□ -0.44
VPS39-201ENST00000318006 GH2P01242 217 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms