RNA–Protein interactions for RNA: ENST00000621181.4

CLK1-215, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best) BASIC

Gene CLK1, Length 1,843 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-215ENST00000621181 TLR9Q9NR96 1032 aa8.94□□□□□ -0.98
CLK1-215ENST00000621181 AAASQ9NRG9 546 aa8.94□□□□□ -0.98
CLK1-215ENST00000621181 SLC9A2Q9UBY0 812 aa8.94□□□□□ -0.98
CLK1-215ENST00000621181 PCDHB7Q9Y5E2 793 aa8.94□□□□□ -0.98
CLK1-215ENST00000621181 PCDHGC5Q9Y5F6 944 aa8.94□□□□□ -0.98
CLK1-215ENST00000621181 TAF6LQ9Y6J9 622 aa8.94□□□□□ -0.98
CLK1-215ENST00000621181 PTPRZ1P23471 2315 aaPredicted RBP8.94□□□□□ -0.98
CLK1-215ENST00000621181 FSD2A1L4K1 749 aa8.94□□□□□ -0.98
CLK1-215ENST00000621181 DENND3A2RUS2 1198 aa8.94□□□□□ -0.98
CLK1-215ENST00000621181 PLEKHA8P1O95397 391 aa8.94□□□□□ -0.98
CLK1-215ENST00000621181 SMARCA1P28370 1054 aa8.94□□□□□ -0.98
CLK1-215ENST00000621181 GATMP50440 423 aa8.94□□□□□ -0.98
CLK1-215ENST00000621181 ANTXR2P58335 489 aa8.94□□□□□ -0.98
CLK1-215ENST00000621181 KRT76Q01546 638 aa8.94□□□□□ -0.98
CLK1-215ENST00000621181 SIGLEC14Q08ET2 396 aa8.94□□□□□ -0.98
CLK1-215ENST00000621181 UBE2SQ16763 222 aa8.94□□□□□ -0.98
CLK1-215ENST00000621181 THNSL1Q8IYQ7 743 aa8.94□□□□□ -0.98
CLK1-215ENST00000621181 CMTR1Q8N1G2 835 aaKnown RBP8.94□□□□□ -0.98
CLK1-215ENST00000621181 FBXL6Q8N531 539 aa8.94□□□□□ -0.98
CLK1-215ENST00000621181 TRAPPC12Q8WVT3 735 aa8.94□□□□□ -0.98
CLK1-215ENST00000621181 SNX27Q96L92 541 aa8.94□□□□□ -0.98
CLK1-215ENST00000621181 SDF4Q9BRK5 362 aa8.94□□□□□ -0.98
CLK1-215ENST00000621181 LY9Q9HBG7 655 aa8.94□□□□□ -0.98
CLK1-215ENST00000621181 JADE2Q9NQC1 790 aa8.94□□□□□ -0.98
CLK1-215ENST00000621181 PCDHA2Q9Y5H9 948 aa8.94□□□□□ -0.98
CLK1-215ENST00000621181 UBIAD1Q9Y5Z9 338 aa8.94□□□□□ -0.98
CLK1-215ENST00000621181 PLXNA4Q9HCM2 1894 aa8.93□□□□□ -0.98
CLK1-215ENST00000621181 CCDC69A6NI79 296 aa8.93□□□□□ -0.98
CLK1-215ENST00000621181 TBKBP1A7MCY6 615 aa8.93□□□□□ -0.98
CLK1-215ENST00000621181 ST18O60284 1047 aa8.93□□□□□ -0.98
CLK1-215ENST00000621181 SRGAP2BP0DMP2 458 aa8.93□□□□□ -0.98
CLK1-215ENST00000621181 GSPT1P15170 499 aaKnown RBP8.93□□□□□ -0.98
CLK1-215ENST00000621181 SARSP49591 514 aaKnown RBP8.93□□□□□ -0.98
CLK1-215ENST00000621181 STAT5BP51692 787 aa8.93□□□□□ -0.98
CLK1-215ENST00000621181 UBE3AQ05086 875 aa8.93□□□□□ -0.98
CLK1-215ENST00000621181 CBX2Q14781 532 aaPredicted RBP8.93□□□□□ -0.98
CLK1-215ENST00000621181 PLCB4Q15147 1175 aa8.93□□□□□ -0.98
CLK1-215ENST00000621181 TTC22Q5TAA0 569 aa8.93□□□□□ -0.98
CLK1-215ENST00000621181 ASTLQ6HA08 431 aaPredicted RBP8.93□□□□□ -0.98
CLK1-215ENST00000621181 ZBTB33Q86T24 672 aa8.93□□□□□ -0.98
CLK1-215ENST00000621181 NME8Q8N427 588 aa8.93□□□□□ -0.98
CLK1-215ENST00000621181 CCDC82Q8N4S0 544 aa8.93□□□□□ -0.98
CLK1-215ENST00000621181 SRBD1Q8N5C6 995 aaKnown RBP8.93□□□□□ -0.98
CLK1-215ENST00000621181 NEK1Q96PY6 1258 aa8.93□□□□□ -0.98
CLK1-215ENST00000621181 PCYT2Q99447 389 aa8.93□□□□□ -0.98
CLK1-215ENST00000621181 CDCA3Q99618 268 aaPredicted RBP8.93□□□□□ -0.98
CLK1-215ENST00000621181 KCNH7Q9NS40 1196 aa8.93□□□□□ -0.98
CLK1-215ENST00000621181 TMEM260Q9NX78 707 aa8.93□□□□□ -0.98
CLK1-215ENST00000621181 PCDHA6Q9UN73 950 aa8.93□□□□□ -0.98
CLK1-215ENST00000621181 PCDHA8Q9Y5H6 950 aa8.93□□□□□ -0.98
CLK1-215ENST00000621181 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.92□□□□□ -0.98
CLK1-215ENST00000621181 SMIM35A0A1B0GVV1 85 aa8.92□□□□□ -0.98
CLK1-215ENST00000621181 hCG_1642624A0A1W2PR95 340 aa8.92□□□□□ -0.98
CLK1-215ENST00000621181 FGF18O76093 207 aa8.92□□□□□ -0.98
CLK1-215ENST00000621181 ATF7P17544 494 aaPredicted RBP8.92□□□□□ -0.98
CLK1-215ENST00000621181 RXRAP19793 462 aa8.92□□□□□ -0.98
CLK1-215ENST00000621181 SP100P23497 879 aaPredicted RBP8.92□□□□□ -0.98
CLK1-215ENST00000621181 TIE1P35590 1138 aa8.92□□□□□ -0.98
CLK1-215ENST00000621181 ACTR2P61160 394 aa8.92□□□□□ -0.98
CLK1-215ENST00000621181 RBM10P98175 930 aaKnown RBP8.92□□□□□ -0.98
CLK1-215ENST00000621181 TCF15Q12870 199 aa8.92□□□□□ -0.98
CLK1-215ENST00000621181 MTHFD1LQ6UB35 978 aa8.92□□□□□ -0.98
CLK1-215ENST00000621181 PLPPR4Q7Z2D5 763 aa8.92□□□□□ -0.98
CLK1-215ENST00000621181 HEATR3Q7Z4Q2 680 aa8.92□□□□□ -0.98
CLK1-215ENST00000621181 MB21D2Q8IYB1 491 aaPredicted RBP8.92□□□□□ -0.98
CLK1-215ENST00000621181 TMTC2Q8N394 836 aa8.92□□□□□ -0.98
CLK1-215ENST00000621181 ADAM2Q99965 735 aa8.92□□□□□ -0.98
CLK1-215ENST00000621181 TMX1Q9H3N1 280 aa8.92□□□□□ -0.98
CLK1-215ENST00000621181 KDM3AQ9Y4C1 1321 aa8.92□□□□□ -0.98
CLK1-215ENST00000621181 ZFHX2Q9C0A1 2572 aaPredicted RBP8.92□□□□□ -0.98
CLK1-215ENST00000621181 BACH1O14867 736 aa8.91□□□□□ -0.98
CLK1-215ENST00000621181 PRC1O43663 620 aa8.91□□□□□ -0.98
CLK1-215ENST00000621181 RPS6KA5O75582 802 aa8.91□□□□□ -0.98
CLK1-215ENST00000621181 CALM1P0DP23 149 aa8.91□□□□□ -0.98
CLK1-215ENST00000621181 CALM2P0DP24 149 aa8.91□□□□□ -0.98
CLK1-215ENST00000621181 CALM3P0DP25 149 aa8.91□□□□□ -0.98
CLK1-215ENST00000621181 CHMLP26374 656 aa8.91□□□□□ -0.98
CLK1-215ENST00000621181 KLRC1P26715 233 aa8.91□□□□□ -0.98
CLK1-215ENST00000621181 SLC26A2P50443 739 aa8.91□□□□□ -0.98
CLK1-215ENST00000621181 ODR4Q5SWX8 454 aa8.91□□□□□ -0.98
CLK1-215ENST00000621181 PDE12Q6L8Q7 609 aaKnown RBP8.91□□□□□ -0.98
CLK1-215ENST00000621181 SLC24A5Q71RS6 500 aa8.91□□□□□ -0.98
CLK1-215ENST00000621181 CYP2W1Q8TAV3 490 aa8.91□□□□□ -0.98
CLK1-215ENST00000621181 SUSD6Q92537 303 aa8.91□□□□□ -0.98
CLK1-215ENST00000621181 MXRA8Q9BRK3 442 aa8.91□□□□□ -0.98
CLK1-215ENST00000621181 C1orf112Q9NSG2 853 aa8.91□□□□□ -0.98
CLK1-215ENST00000621181 FAM86C1Q9NVL1 165 aa8.91□□□□□ -0.98
CLK1-215ENST00000621181 MYO15AQ9UKN7 3530 aa8.91□□□□□ -0.98
CLK1-215ENST00000621181 FNDC1Q4ZHG4 1894 aaPredicted RBP8.91□□□□□ -0.98
CLK1-215ENST00000621181 GPR182O15218 404 aa8.91□□□□□ -0.98
CLK1-215ENST00000621181 SGSM2O43147 1006 aa8.91□□□□□ -0.98
CLK1-215ENST00000621181 MGEA5O60502 916 aa8.91□□□□□ -0.98
CLK1-215ENST00000621181 GFRA3O60609 400 aa8.91□□□□□ -0.98
CLK1-215ENST00000621181 NFASCO94856 1347 aa8.91□□□□□ -0.98
CLK1-215ENST00000621181 MCM5P33992 734 aa8.91□□□□□ -0.98
CLK1-215ENST00000621181 TECP42680 631 aa8.91□□□□□ -0.98
CLK1-215ENST00000621181 VCPP55072 806 aaKnown RBP8.91□□□□□ -0.98
CLK1-215ENST00000621181 ERVFC1P60507 584 aa8.91□□□□□ -0.98
CLK1-215ENST00000621181 PDAP1Q13442 181 aaKnown RBP8.91□□□□□ -0.98
CLK1-215ENST00000621181 PTPN21Q16825 1174 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms