RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 EZRP15311 586 aaKnown RBP11.29□□□□□ -0.6
LIG1-220ENST00000601091 INPP5BP32019 993 aa11.29□□□□□ -0.6
LIG1-220ENST00000601091 RAB27AP51159 221 aa11.29□□□□□ -0.6
LIG1-220ENST00000601091 APBA1Q02410 837 aa11.29□□□□□ -0.6
LIG1-220ENST00000601091 CACNB1Q02641 598 aaPredicted RBP11.29□□□□□ -0.6
LIG1-220ENST00000601091 CERKLQ49MI3 558 aaPredicted RBP11.29□□□□□ -0.6
LIG1-220ENST00000601091 KRT12Q99456 494 aa11.29□□□□□ -0.6
LIG1-220ENST00000601091 ZMYND12Q9H0C1 365 aa11.29□□□□□ -0.6
LIG1-220ENST00000601091 ADAMTS1Q9UHI8 967 aa11.29□□□□□ -0.6
LIG1-220ENST00000601091 hCG_2014768A0A024R1R8 64 aa11.29□□□□□ -0.6
LIG1-220ENST00000601091 GSTTP1A0A1W2PQM5 241 aa11.29□□□□□ -0.6
LIG1-220ENST00000601091 TARSL2A2RTX5 802 aaKnown RBP11.29□□□□□ -0.6
LIG1-220ENST00000601091 HEXIM1O94992 359 aaKnown RBP11.29□□□□□ -0.6
LIG1-220ENST00000601091 CCT5P48643 541 aa11.29□□□□□ -0.6
LIG1-220ENST00000601091 PABPC4Q13310 644 aaKnown RBP eCLIP11.29□□□□□ -0.62e-6■■■■□ 26.1
LIG1-220ENST00000601091 BEND6Q5SZJ8 279 aaPredicted RBP11.29□□□□□ -0.6
LIG1-220ENST00000601091 EMBQ6PCB8 327 aa11.29□□□□□ -0.6
LIG1-220ENST00000601091 SMIM5Q71RC9 77 aa11.29□□□□□ -0.6
LIG1-220ENST00000601091 CPLX4Q7Z7G2 160 aa11.29□□□□□ -0.6
LIG1-220ENST00000601091 COG1Q8WTW3 980 aa11.29□□□□□ -0.6
LIG1-220ENST00000601091 RAD54LQ92698 747 aa11.29□□□□□ -0.6
LIG1-220ENST00000601091 KIFC2Q96AC6 838 aa11.29□□□□□ -0.6
LIG1-220ENST00000601091 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.29□□□□□ -0.6
LIG1-220ENST00000601091 PDS5AQ29RF7 1337 aaKnown RBP11.29□□□□□ -0.6
LIG1-220ENST00000601091 FOSP01100 380 aaPredicted RBP11.29□□□□□ -0.6
LIG1-220ENST00000601091 SERPINB2P05120 415 aa11.29□□□□□ -0.6
LIG1-220ENST00000601091 KLRK1P26718 216 aa11.29□□□□□ -0.6
LIG1-220ENST00000601091 HNRNPH1P31943 449 aaKnown RBP11.29□□□□□ -0.6
LIG1-220ENST00000601091 WASHC5Q12768 1159 aa11.29□□□□□ -0.6
LIG1-220ENST00000601091 BIRC3Q13489 604 aa11.29□□□□□ -0.6
LIG1-220ENST00000601091 SPATA20Q8TB22 786 aa11.29□□□□□ -0.6
LIG1-220ENST00000601091 U2AF1L4Q8WU68 220 aaKnown RBP11.29□□□□□ -0.6
LIG1-220ENST00000601091 AGAP3Q96P47 875 aa11.29□□□□□ -0.6
LIG1-220ENST00000601091 AMNQ9BXJ7 453 aa11.29□□□□□ -0.6
LIG1-220ENST00000601091 MLXIPQ9HAP2 919 aa11.29□□□□□ -0.6
LIG1-220ENST00000601091 STIM2Q9P246 746 aa11.29□□□□□ -0.6
LIG1-220ENST00000601091 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.29□□□□□ -0.6
LIG1-220ENST00000601091 CAMTA1Q9Y6Y1 1673 aa11.28□□□□□ -0.6
LIG1-220ENST00000601091 FTCDO95954 541 aa11.28□□□□□ -0.6
LIG1-220ENST00000601091 CFBP00751 764 aa11.28□□□□□ -0.6
LIG1-220ENST00000601091 GRIK3Q13003 919 aa11.28□□□□□ -0.6
LIG1-220ENST00000601091 PDIA5Q14554 519 aa11.28□□□□□ -0.6
LIG1-220ENST00000601091 COBLL1Q53SF7 1204 aa11.28□□□□□ -0.6
LIG1-220ENST00000601091 DAAM2Q86T65 1068 aa11.28□□□□□ -0.6
LIG1-220ENST00000601091 USP37Q86T82 979 aa11.28□□□□□ -0.6
LIG1-220ENST00000601091 FBXO11Q86XK2 927 aa11.28□□□□□ -0.6
LIG1-220ENST00000601091 TPH2Q8IWU9 490 aa11.28□□□□□ -0.6
LIG1-220ENST00000601091 RNF10Q8N5U6 811 aaKnown RBP11.28□□□□□ -0.6
LIG1-220ENST00000601091 FAM133AQ8N9E0 248 aa11.28□□□□□ -0.6
LIG1-220ENST00000601091 SREK1Q8WXA9 508 aaKnown RBP11.28□□□□□ -0.6
LIG1-220ENST00000601091 EDEM3Q9BZQ6 932 aa11.28□□□□□ -0.6
LIG1-220ENST00000601091 DHX36Q9H2U1 1008 aaKnown RBP11.28□□□□□ -0.6
LIG1-220ENST00000601091 KBTBD4Q9NVX7 518 aa11.28□□□□□ -0.6
LIG1-220ENST00000601091 MTRF1LQ9UGC7 380 aaKnown RBP11.28□□□□□ -0.6
LIG1-220ENST00000601091 AMFRQ9UKV5 643 aa11.28□□□□□ -0.6
LIG1-220ENST00000601091 PAIP2BQ9ULR5 123 aaKnown RBP11.28□□□□□ -0.6
LIG1-220ENST00000601091 TMEM110-MUSTN1A8MSY1 372 aa11.28□□□□□ -0.6
LIG1-220ENST00000601091 KRIT1O00522 736 aa11.28□□□□□ -0.6
LIG1-220ENST00000601091 EXOC3O60645 756 aa11.28□□□□□ -0.6
LIG1-220ENST00000601091 ATP1A2P50993 1020 aa11.28□□□□□ -0.6
LIG1-220ENST00000601091 CYP4A11Q02928 519 aa11.28□□□□□ -0.6
LIG1-220ENST00000601091 TMEM62Q0P6H9 643 aa11.28□□□□□ -0.6
LIG1-220ENST00000601091 GNPTABQ3T906 1256 aa11.28□□□□□ -0.6
LIG1-220ENST00000601091 CEP85LQ5SZL2 805 aa11.28□□□□□ -0.6
LIG1-220ENST00000601091 ALS2CLQ60I27 953 aa11.28□□□□□ -0.6
LIG1-220ENST00000601091 SLC30A9Q6PML9 568 aa11.28□□□□□ -0.6
LIG1-220ENST00000601091 MSANTD4Q8NCY6 345 aa11.28□□□□□ -0.6
LIG1-220ENST00000601091 TRIM31Q9BZY9 425 aa11.28□□□□□ -0.6
LIG1-220ENST00000601091 EHD4Q9H223 541 aa11.28□□□□□ -0.6
LIG1-220ENST00000601091 HSD3B7Q9H2F3 369 aa11.28□□□□□ -0.6
LIG1-220ENST00000601091 ABCF3Q9NUQ8 709 aa11.28□□□□□ -0.6
LIG1-220ENST00000601091 USP21Q9UK80 565 aa11.28□□□□□ -0.6
LIG1-220ENST00000601091 L1RE1Q9UN81 338 aa11.28□□□□□ -0.6
LIG1-220ENST00000601091 SRCAPQ6ZRS2 3230 aa11.28□□□□□ -0.6
LIG1-220ENST00000601091 A0A087WUV0 522 aaPredicted RBP11.28□□□□□ -0.6
LIG1-220ENST00000601091 ARHGEF35A5YM69 484 aa11.28□□□□□ -0.6
LIG1-220ENST00000601091 TDP2O95551 362 aa11.28□□□□□ -0.6
LIG1-220ENST00000601091 VIL1P09327 827 aaKnown RBP11.28□□□□□ -0.6
LIG1-220ENST00000601091 RASA1P20936 1047 aa11.28□□□□□ -0.6
LIG1-220ENST00000601091 HOXD11P31277 338 aaPredicted RBP11.28□□□□□ -0.6
LIG1-220ENST00000601091 DOK7Q18PE1 504 aa11.28□□□□□ -0.6
LIG1-220ENST00000601091 OSBPL9Q96SU4 736 aa11.28□□□□□ -0.6
LIG1-220ENST00000601091 VIPAS39Q9H9C1 493 aa11.28□□□□□ -0.6
LIG1-220ENST00000601091 MAD2L2Q9UI95 211 aa11.28□□□□□ -0.6
LIG1-220ENST00000601091 SNX12Q9UMY4 172 aa11.28□□□□□ -0.6
LIG1-220ENST00000601091 SPATA31A1Q5TZJ5 1347 aa11.28□□□□□ -0.6
LIG1-220ENST00000601091 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.27□□□□□ -0.6
LIG1-220ENST00000601091 SMIM22K7EJ46 135 aa11.27□□□□□ -0.6
LIG1-220ENST00000601091 ZNF132P52740 706 aa11.27□□□□□ -0.6
LIG1-220ENST00000601091 MTMR3Q13615 1198 aa11.27□□□□□ -0.6
LIG1-220ENST00000601091 GLE1Q53GS7 698 aaKnown RBP11.27□□□□□ -0.6
LIG1-220ENST00000601091 SLC10A5Q5PT55 438 aa11.27□□□□□ -0.6
LIG1-220ENST00000601091 FAM83BQ5T0W9 1011 aa11.27□□□□□ -0.6
LIG1-220ENST00000601091 FAM182BQ5T319 152 aa11.27□□□□□ -0.6
LIG1-220ENST00000601091 KCTD16Q68DU8 428 aa11.27□□□□□ -0.6
LIG1-220ENST00000601091 DAGLBQ8NCG7 672 aa11.27□□□□□ -0.6
LIG1-220ENST00000601091 PPP1R14BQ96C90 147 aa11.27□□□□□ -0.6
LIG1-220ENST00000601091 CEP63Q96MT8 703 aa11.27□□□□□ -0.6
LIG1-220ENST00000601091 DNAJC7Q99615 494 aa11.27□□□□□ -0.6
LIG1-220ENST00000601091 CEP72Q9P209 647 aa11.27□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms