RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 IFNAR1P17181 557 aa15.44■□□□□ 0.06
TRIM28-211ENST00000597968 RPS6KB1P23443 525 aa15.44■□□□□ 0.06
TRIM28-211ENST00000597968 SARSP49591 514 aaKnown RBP15.44■□□□□ 0.06
TRIM28-211ENST00000597968 USP11P51784 963 aa15.44■□□□□ 0.06
TRIM28-211ENST00000597968 CRYBB1P53674 252 aaPredicted RBP15.44■□□□□ 0.06
TRIM28-211ENST00000597968 UBE3AQ05086 875 aa15.44■□□□□ 0.06
TRIM28-211ENST00000597968 PKN1Q16512 942 aa15.44■□□□□ 0.06
TRIM28-211ENST00000597968 CSPP1Q1MSJ5 1256 aa15.44■□□□□ 0.06
TRIM28-211ENST00000597968 JAKMIP3Q5VZ66 844 aa15.44■□□□□ 0.06
TRIM28-211ENST00000597968 RTN4RL1Q86UN2 441 aaPredicted RBP15.44■□□□□ 0.06
TRIM28-211ENST00000597968 CCDC60Q8IWA6 550 aaPredicted RBP15.44■□□□□ 0.06
TRIM28-211ENST00000597968 KIAA0319LQ8IZA0 1049 aa15.44■□□□□ 0.06
TRIM28-211ENST00000597968 BRF1Q92994 677 aa15.44■□□□□ 0.06
TRIM28-211ENST00000597968 JAKMIP1Q96N16 626 aaKnown RBP15.44■□□□□ 0.06
TRIM28-211ENST00000597968 ELAC1Q9H777 363 aaKnown RBP15.44■□□□□ 0.06
TRIM28-211ENST00000597968 TMEM260Q9NX78 707 aa15.44■□□□□ 0.06
TRIM28-211ENST00000597968 LRFN2Q9ULH4 789 aa15.44■□□□□ 0.06
TRIM28-211ENST00000597968 PLAGL2Q9UPG8 496 aa15.44■□□□□ 0.06
TRIM28-211ENST00000597968 HCN4Q9Y3Q4 1203 aa15.44■□□□□ 0.06
TRIM28-211ENST00000597968 SNX14Q9Y5W7 946 aa15.44■□□□□ 0.06
TRIM28-211ENST00000597968 RBAK-RBAKDNI3L0D1 243 aa15.43■□□□□ 0.06
TRIM28-211ENST00000597968 APOBRQ0VD83 1088 aa15.43■□□□□ 0.06
TRIM28-211ENST00000597968 NTRK3Q16288 839 aa15.43■□□□□ 0.06
TRIM28-211ENST00000597968 SWSAP1Q6NVH7 229 aa15.43■□□□□ 0.06
TRIM28-211ENST00000597968 SLC24A5Q71RS6 500 aa15.43■□□□□ 0.06
TRIM28-211ENST00000597968 TRAPPC12Q8WVT3 735 aa15.43■□□□□ 0.06
TRIM28-211ENST00000597968 CCDC136Q96JN2 1154 aa15.43■□□□□ 0.06
TRIM28-211ENST00000597968 POP1Q99575 1024 aaKnown RBP15.43■□□□□ 0.06
TRIM28-211ENST00000597968 RIT2Q99578 217 aa15.43■□□□□ 0.06
TRIM28-211ENST00000597968 LRFN3Q9BTN0 628 aa15.43■□□□□ 0.06
TRIM28-211ENST00000597968 UPF3BQ9BZI7 483 aaKnown RBP15.43■□□□□ 0.06
TRIM28-211ENST00000597968 EPHX3Q9H6B9 360 aa15.43■□□□□ 0.06
TRIM28-211ENST00000597968 ERVK-5Q9HDB9 667 aa15.43■□□□□ 0.06
TRIM28-211ENST00000597968 AAASQ9NRG9 546 aa15.43■□□□□ 0.06
TRIM28-211ENST00000597968 RGS18Q9NS28 235 aa15.43■□□□□ 0.06
TRIM28-211ENST00000597968 CLDND1Q9NY35 253 aa15.43■□□□□ 0.06
TRIM28-211ENST00000597968 NAP1L2Q9ULW6 460 aaPredicted RBP15.43■□□□□ 0.06
TRIM28-211ENST00000597968 PCDHB7Q9Y5E2 793 aa15.43■□□□□ 0.06
TRIM28-211ENST00000597968 NLRC5Q86WI3 1866 aa15.43■□□□□ 0.06
TRIM28-211ENST00000597968 WDR64B1ANS9 1081 aa15.42■□□□□ 0.06
TRIM28-211ENST00000597968 GRM6O15303 877 aa15.42■□□□□ 0.06
TRIM28-211ENST00000597968 IL9P15248 144 aa15.42■□□□□ 0.06
TRIM28-211ENST00000597968 TMOD1P28289 359 aa15.42■□□□□ 0.06
TRIM28-211ENST00000597968 SFNP31947 248 aa15.42■□□□□ 0.06
TRIM28-211ENST00000597968 CDC42EP1Q00587 391 aa15.42■□□□□ 0.06
TRIM28-211ENST00000597968 PDE12Q6L8Q7 609 aaKnown RBP15.42■□□□□ 0.06
TRIM28-211ENST00000597968 ADHFE1Q8IWW8 467 aa15.42■□□□□ 0.06
TRIM28-211ENST00000597968 RDM1Q8NG50 284 aa15.42■□□□□ 0.06
TRIM28-211ENST00000597968 RSPH1Q8WYR4 309 aa15.42■□□□□ 0.06
TRIM28-211ENST00000597968 TMX1Q9H3N1 280 aa15.42■□□□□ 0.06
TRIM28-211ENST00000597968 MRPL42Q9Y6G3 142 aaKnown RBP15.42■□□□□ 0.06
TRIM28-211ENST00000597968 DENND3A2RUS2 1198 aa15.41■□□□□ 0.06
TRIM28-211ENST00000597968 C19orf67A6NJJ6 358 aa15.41■□□□□ 0.06
TRIM28-211ENST00000597968 PRR33A8MZF0 331 aa15.41■□□□□ 0.06
TRIM28-211ENST00000597968 ZBTB42B2RXF5 422 aa15.41■□□□□ 0.06
TRIM28-211ENST00000597968 DDX39AO00148 427 aaKnown RBP15.41■□□□□ 0.06
TRIM28-211ENST00000597968 HOXA2O43364 376 aa15.41■□□□□ 0.06
TRIM28-211ENST00000597968 C22orf31O95567 290 aa15.41■□□□□ 0.06
TRIM28-211ENST00000597968 ATP4AP20648 1035 aa15.41■□□□□ 0.06
TRIM28-211ENST00000597968 LTBRP36941 435 aa15.41■□□□□ 0.06
TRIM28-211ENST00000597968 PLA2G5P39877 138 aa15.41■□□□□ 0.06
TRIM28-211ENST00000597968 FAM189BP81408 668 aa15.41■□□□□ 0.06
TRIM28-211ENST00000597968 TMEM62Q0P6H9 643 aa15.41■□□□□ 0.06
TRIM28-211ENST00000597968 HYAL1Q12794 435 aa15.41■□□□□ 0.06
TRIM28-211ENST00000597968 NFX1Q12986 1120 aaKnown RBP15.41■□□□□ 0.06
TRIM28-211ENST00000597968 SMAD2Q15796 467 aaKnown RBP15.41■□□□□ 0.06
TRIM28-211ENST00000597968 GALNT17Q6IS24 598 aa15.41■□□□□ 0.06
TRIM28-211ENST00000597968 CKAP2LQ8IYA6 745 aa15.41■□□□□ 0.06
TRIM28-211ENST00000597968 TRIM22Q8IYM9 498 aa15.41■□□□□ 0.06
TRIM28-211ENST00000597968 SPPL3Q8TCT6 385 aa15.41■□□□□ 0.06
TRIM28-211ENST00000597968 NRBP2Q9NSY0 501 aa15.41■□□□□ 0.06
TRIM28-211ENST00000597968 TMEM161AQ9NX61 479 aa15.41■□□□□ 0.06
TRIM28-211ENST00000597968 PCDHB12Q9Y5F1 795 aa15.41■□□□□ 0.06
TRIM28-211ENST00000597968 C9IYK1 514 aa15.4■□□□□ 0.06
TRIM28-211ENST00000597968 H3BQ06 376 aaPredicted RBP15.4■□□□□ 0.06
TRIM28-211ENST00000597968 SSTR3P32745 418 aaPredicted RBP15.4■□□□□ 0.06
TRIM28-211ENST00000597968 JAK3P52333 1124 aa15.4■□□□□ 0.06
TRIM28-211ENST00000597968 ZP2Q05996 745 aa15.4■□□□□ 0.06
TRIM28-211ENST00000597968 ADAM15Q13444 863 aa15.4■□□□□ 0.06
TRIM28-211ENST00000597968 PRR16Q569H4 304 aa15.4■□□□□ 0.06
TRIM28-211ENST00000597968 RUFY3Q7L099 469 aa15.4■□□□□ 0.06
TRIM28-211ENST00000597968 LENG9Q96B70 501 aa15.4■□□□□ 0.06
TRIM28-211ENST00000597968 ZBTB10Q96DT7 871 aa15.4■□□□□ 0.06
TRIM28-211ENST00000597968 ZNF274Q96GC6 653 aaPredicted RBP15.4■□□□□ 0.06
TRIM28-211ENST00000597968 MAP7D2Q96T17 732 aa15.4■□□□□ 0.06
TRIM28-211ENST00000597968 CD320Q9NPF0 282 aa15.4■□□□□ 0.06
TRIM28-211ENST00000597968 ST3GAL5Q9UNP4 418 aa15.4■□□□□ 0.06
TRIM28-211ENST00000597968 NOC2LQ9Y3T9 749 aaKnown RBP15.4■□□□□ 0.06
TRIM28-211ENST00000597968 BRWD1Q9NSI6 2320 aa15.39■□□□□ 0.05
TRIM28-211ENST00000597968 CARNS1A5YM72 827 aa15.39■□□□□ 0.05
TRIM28-211ENST00000597968 GPR32O75388 356 aa15.39■□□□□ 0.05
TRIM28-211ENST00000597968 EYA4O95677 639 aa15.39■□□□□ 0.05
TRIM28-211ENST00000597968 ITGB1P05556 798 aa15.39■□□□□ 0.05
TRIM28-211ENST00000597968 PDIA3P30101 505 aaKnown RBP15.39■□□□□ 0.05
TRIM28-211ENST00000597968 SMAD4Q13485 552 aaKnown RBP15.39■□□□□ 0.05
TRIM28-211ENST00000597968 CAMK1Q14012 370 aa15.39■□□□□ 0.05
TRIM28-211ENST00000597968 CPLX2Q6PUV4 134 aaKnown RBP15.39■□□□□ 0.05
TRIM28-211ENST00000597968 MOXD1Q6UVY6 613 aa15.39■□□□□ 0.05
TRIM28-211ENST00000597968 KLHL23Q8NBE8 558 aa15.39■□□□□ 0.05
TRIM28-211ENST00000597968 PHKBQ93100 1093 aa15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms