RNA–Protein interactions for RNA: ENST00000530304.5

PCF11-203, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 1 (best)

Gene PCF11, Length 2,649 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-203ENST00000530304 VAV3Q9UKW4 847 aa21.26■□□□□ 0.99
PCF11-203ENST00000530304 SLC16A3O15427 465 aaKnown RBP21.26■□□□□ 0.99
PCF11-203ENST00000530304 TAL1P17542 331 aaPredicted RBP21.26■□□□□ 0.99
PCF11-203ENST00000530304 KDM7AQ6ZMT4 941 aa21.26■□□□□ 0.99
PCF11-203ENST00000530304 PACS2Q86VP3 889 aa21.26■□□□□ 0.99
PCF11-203ENST00000530304 RNPC3Q96LT9 517 aaKnown RBP21.26■□□□□ 0.99
PCF11-203ENST00000530304 AP1M1Q9BXS5 423 aa21.26■□□□□ 0.99
PCF11-203ENST00000530304 NENFQ9UMX5 172 aa21.26■□□□□ 0.99
PCF11-203ENST00000530304 PCDHB13Q9Y5F0 798 aa21.26■□□□□ 0.99
PCF11-203ENST00000530304 FAM169AQ9Y6X4 670 aa21.26■□□□□ 0.99
PCF11-203ENST00000530304 VGLL3A8MV65 326 aa21.25■□□□□ 0.99
PCF11-203ENST00000530304 TBCAO75347 108 aaKnown RBP21.25■□□□□ 0.99
PCF11-203ENST00000530304 FOSP01100 380 aaPredicted RBP21.25■□□□□ 0.99
PCF11-203ENST00000530304 ZBTB48P10074 688 aaPredicted RBP21.25■□□□□ 0.99
PCF11-203ENST00000530304 HSPA9P38646 679 aaKnown RBP21.25■□□□□ 0.99
PCF11-203ENST00000530304 ICA1Q05084 483 aa21.25■□□□□ 0.99
PCF11-203ENST00000530304 HLTFQ14527 1009 aaKnown RBP eCLIP21.25■□□□□ 0.99
PCF11-203ENST00000530304 METTL13Q8N6R0 699 aa21.25■□□□□ 0.99
PCF11-203ENST00000530304 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP21.25■□□□□ 0.99
PCF11-203ENST00000530304 ZDHHC15Q96MV8 337 aa21.25■□□□□ 0.99
PCF11-203ENST00000530304 EIF2AK1Q9BQI3 630 aaKnown RBP21.25■□□□□ 0.99
PCF11-203ENST00000530304 A0A087WUV0 522 aaPredicted RBP21.25■□□□□ 0.99
PCF11-203ENST00000530304 SFI1A8K8P3 1242 aa21.25■□□□□ 0.99
PCF11-203ENST00000530304 ECHS1P30084 290 aa21.25■□□□□ 0.99
PCF11-203ENST00000530304 IKQ13123 557 aaPredicted RBP21.25■□□□□ 0.99
PCF11-203ENST00000530304 TTC31Q49AM3 519 aaPredicted RBP21.25■□□□□ 0.99
PCF11-203ENST00000530304 KCNQ5Q9NR82 932 aa21.25■□□□□ 0.99
PCF11-203ENST00000530304 RGL1Q9NZL6 768 aa21.25■□□□□ 0.99
PCF11-203ENST00000530304 RABGAP1Q9Y3P9 1069 aa21.25■□□□□ 0.99
PCF11-203ENST00000530304 SIPA1L1O43166 1804 aa21.25■□□□□ 0.99
PCF11-203ENST00000530304 TMCO5BA8MYB1 307 aa21.25■□□□□ 0.99
PCF11-203ENST00000530304 ANXA13P27216 316 aa21.25■□□□□ 0.99
PCF11-203ENST00000530304 HOXA13P31271 388 aaPredicted RBP21.25■□□□□ 0.99
PCF11-203ENST00000530304 CIITAP33076 1130 aa21.25■□□□□ 0.99
PCF11-203ENST00000530304 VPS36Q86VN1 386 aa21.25■□□□□ 0.99
PCF11-203ENST00000530304 EIF1ADQ8N9N8 165 aaKnown RBP21.25■□□□□ 0.99
PCF11-203ENST00000530304 PLAAQ9Y263 795 aa21.25■□□□□ 0.99
PCF11-203ENST00000530304 SAMM50Q9Y512 469 aa21.25■□□□□ 0.99
PCF11-203ENST00000530304 PGRMC1O00264 195 aaKnown RBP21.24■□□□□ 0.99
PCF11-203ENST00000530304 EML1O00423 815 aa21.24■□□□□ 0.99
PCF11-203ENST00000530304 DDX3XO00571 662 aaKnown RBP eCLIP21.24■□□□□ 0.99
PCF11-203ENST00000530304 SART1O43290 800 aaKnown RBP21.24■□□□□ 0.99
PCF11-203ENST00000530304 TGFB1I1O43294 461 aa21.24■□□□□ 0.99
PCF11-203ENST00000530304 ZEB2O60315 1214 aa21.24■□□□□ 0.99
PCF11-203ENST00000530304 EYA4O95677 639 aa21.24■□□□□ 0.99
PCF11-203ENST00000530304 H2AFZP0C0S5 128 aa21.24■□□□□ 0.99
PCF11-203ENST00000530304 EMC10Q5UCC4 262 aa21.24■□□□□ 0.99
PCF11-203ENST00000530304 H2AFVQ71UI9 128 aa21.24■□□□□ 0.99
PCF11-203ENST00000530304 SH3BP5LQ7L8J4 393 aa21.24■□□□□ 0.99
PCF11-203ENST00000530304 PEX26Q7Z412 305 aa21.24■□□□□ 0.99
PCF11-203ENST00000530304 TADA2BQ86TJ2 420 aa21.24■□□□□ 0.99
PCF11-203ENST00000530304 PROCA1Q8NCQ7 364 aaPredicted RBP21.24■□□□□ 0.99
PCF11-203ENST00000530304 CALR3Q96L12 384 aaKnown RBP21.24■□□□□ 0.99
PCF11-203ENST00000530304 ATP6V1G3Q96LB4 118 aa21.24■□□□□ 0.99
PCF11-203ENST00000530304 BUD13Q9BRD0 619 aaKnown RBP eCLIP21.24■□□□□ 0.993e-13■□□□□ 8.5
PCF11-203ENST00000530304 POLR3CQ9BUI4 534 aaPredicted RBP21.24■□□□□ 0.99
PCF11-203ENST00000530304 FAM198AQ9UFP1 575 aa21.24■□□□□ 0.99
PCF11-203ENST00000530304 NOC2LQ9Y3T9 749 aaKnown RBP21.24■□□□□ 0.99
PCF11-203ENST00000530304 EP400Q96L91 3159 aa21.24■□□□□ 0.99
PCF11-203ENST00000530304 NDUFAB1O14561 156 aa21.24■□□□□ 0.99
PCF11-203ENST00000530304 POLD1P28340 1107 aa21.24■□□□□ 0.99
PCF11-203ENST00000530304 CUL1Q13616 776 aa21.24■□□□□ 0.99
PCF11-203ENST00000530304 TATDN1Q6P1N9 297 aa21.24■□□□□ 0.99
PCF11-203ENST00000530304 SLFN11Q7Z7L1 901 aa21.24■□□□□ 0.99
PCF11-203ENST00000530304 BORCS6Q96GS4 357 aa21.24■□□□□ 0.99
PCF11-203ENST00000530304 NDUFB10O96000 172 aa21.23■□□□□ 0.99
PCF11-203ENST00000530304 NR1D1P20393 614 aa21.23■□□□□ 0.99
PCF11-203ENST00000530304 ZNF76P36508 570 aa21.23■□□□□ 0.99
PCF11-203ENST00000530304 MMP14P50281 582 aa21.23■□□□□ 0.99
PCF11-203ENST00000530304 GUCY1A3Q02108 690 aa21.23■□□□□ 0.99
PCF11-203ENST00000530304 SYDE2Q5VT97 1194 aa21.23■□□□□ 0.99
PCF11-203ENST00000530304 RINT1Q6NUQ1 792 aa21.23■□□□□ 0.99
PCF11-203ENST00000530304 MAATS1Q7Z4T9 603 aa21.23■□□□□ 0.99
PCF11-203ENST00000530304 DDX42Q86XP3 938 aaKnown RBP eCLIP21.23■□□□□ 0.99
PCF11-203ENST00000530304 KIAA0825Q8IV33 1275 aa21.23■□□□□ 0.99
PCF11-203ENST00000530304 C1orf131Q8NDD1 294 aaKnown RBP21.23■□□□□ 0.99
PCF11-203ENST00000530304 LMBR1Q8WVP7 490 aa21.23■□□□□ 0.99
PCF11-203ENST00000530304 GJD4Q96KN9 370 aaPredicted RBP21.23■□□□□ 0.99
PCF11-203ENST00000530304 IKZF4Q9H2S9 585 aa21.23■□□□□ 0.99
PCF11-203ENST00000530304 OLFML3Q9NRN5 406 aa21.23■□□□□ 0.99
PCF11-203ENST00000530304 STXBP5LQ9Y2K9 1186 aa21.23■□□□□ 0.99
PCF11-203ENST00000530304 A0A0A6YYK5 440 aaPredicted RBP21.23■□□□□ 0.99
PCF11-203ENST00000530304 GTPBP10A4D1E9 387 aaKnown RBP21.23■□□□□ 0.99
PCF11-203ENST00000530304 OPLAHO14841 1288 aa21.23■□□□□ 0.99
PCF11-203ENST00000530304 GFPT2O94808 682 aa21.23■□□□□ 0.99
PCF11-203ENST00000530304 GDF11O95390 407 aa21.23■□□□□ 0.99
PCF11-203ENST00000530304 CEP85LQ5SZL2 805 aa21.23■□□□□ 0.99
PCF11-203ENST00000530304 TMEM179Q6ZVK1 233 aa21.23■□□□□ 0.99
PCF11-203ENST00000530304 PIGOQ8TEQ8 1089 aa21.23■□□□□ 0.99
PCF11-203ENST00000530304 U2AF1L4Q8WU68 220 aaKnown RBP21.23■□□□□ 0.99
PCF11-203ENST00000530304 DDX47Q9H0S4 455 aaKnown RBP21.23■□□□□ 0.99
PCF11-203ENST00000530304 ATP8B3O60423 1300 aa21.22■□□□□ 0.99
PCF11-203ENST00000530304 LSP1P33241 339 aa21.22■□□□□ 0.99
PCF11-203ENST00000530304 DAAM2Q86T65 1068 aa21.22■□□□□ 0.99
PCF11-203ENST00000530304 GMCL1P1Q8NEA9 526 aa21.22■□□□□ 0.99
PCF11-203ENST00000530304 GMCL1Q96IK5 515 aa21.22■□□□□ 0.99
PCF11-203ENST00000530304 DBNDD1Q9H9R9 158 aa21.22■□□□□ 0.99
PCF11-203ENST00000530304 KRIT1O00522 736 aa21.22■□□□□ 0.99
PCF11-203ENST00000530304 FERP16591 822 aa21.22■□□□□ 0.99
PCF11-203ENST00000530304 HSD17B3P37058 310 aa21.22■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms