RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 GCKP35557 465 aa8.47□□□□□ -1.05
USP4-211ENST00000485450 RESTQ13127 1097 aa8.47□□□□□ -1.05
USP4-211ENST00000485450 KCTD1Q719H9 257 aa8.47□□□□□ -1.05
USP4-211ENST00000485450 SESTD1Q86VW0 696 aa8.47□□□□□ -1.05
USP4-211ENST00000485450 ANKRD13CQ8N6S4 541 aa8.47□□□□□ -1.05
USP4-211ENST00000485450 LMBR1Q8WVP7 490 aa8.47□□□□□ -1.05
USP4-211ENST00000485450 AMNQ9BXJ7 453 aa8.47□□□□□ -1.05
USP4-211ENST00000485450 GOLPH3LQ9H4A5 285 aa8.47□□□□□ -1.05
USP4-211ENST00000485450 TNRC18O15417 2968 aaPredicted RBP8.47□□□□□ -1.05
USP4-211ENST00000485450 IRAK1P51617 712 aa8.46□□□□□ -1.05
USP4-211ENST00000485450 VSNL1P62760 191 aa8.46□□□□□ -1.05
USP4-211ENST00000485450 MKRN3Q13064 507 aaKnown RBP8.46□□□□□ -1.05
USP4-211ENST00000485450 SFMBT2Q5VUG0 894 aa8.46□□□□□ -1.05
USP4-211ENST00000485450 PCNX4Q63HM2 1172 aa8.46□□□□□ -1.05
USP4-211ENST00000485450 TYW1BQ6NUM6 668 aa8.46□□□□□ -1.05
USP4-211ENST00000485450 VTA1Q9NP79 307 aa8.46□□□□□ -1.05
USP4-211ENST00000485450 SLC39A2Q9NP94 309 aa8.46□□□□□ -1.05
USP4-211ENST00000485450 COL20A1Q9P218 1284 aa8.46□□□□□ -1.05
USP4-211ENST00000485450 PCDHGC5Q9Y5F6 944 aa8.46□□□□□ -1.05
USP4-211ENST00000485450 SLC12A7Q9Y666 1083 aa8.46□□□□□ -1.05
USP4-211ENST00000485450 NFASCO94856 1347 aa8.46□□□□□ -1.05
USP4-211ENST00000485450 ERICH2A1L162 156 aa8.46□□□□□ -1.06
USP4-211ENST00000485450 ZNF24P17028 368 aa8.46□□□□□ -1.06
USP4-211ENST00000485450 PRKCZQ05513 592 aa8.46□□□□□ -1.06
USP4-211ENST00000485450 FAM160A1Q05DH4 1040 aa8.46□□□□□ -1.06
USP4-211ENST00000485450 RBL2Q08999 1139 aa8.46□□□□□ -1.06
USP4-211ENST00000485450 SLC4A8Q2Y0W8 1093 aa8.46□□□□□ -1.06
USP4-211ENST00000485450 PHC3Q8NDX5 983 aa8.46□□□□□ -1.06
USP4-211ENST00000485450 SYTL5Q8TDW5 730 aaPredicted RBP8.46□□□□□ -1.06
USP4-211ENST00000485450 ZKSCAN3Q9BRR0 538 aa8.46□□□□□ -1.06
USP4-211ENST00000485450 TSEN34Q9BSV6 310 aaKnown RBP8.46□□□□□ -1.06
USP4-211ENST00000485450 MCOLN1Q9GZU1 580 aa8.46□□□□□ -1.06
USP4-211ENST00000485450 MRPL11Q9Y3B7 192 aaKnown RBP8.46□□□□□ -1.06
USP4-211ENST00000485450 A0A1B0GUA9 196 aa8.46□□□□□ -1.06
USP4-211ENST00000485450 RASSF9O75901 435 aa8.46□□□□□ -1.06
USP4-211ENST00000485450 ABL1P00519 1130 aa8.46□□□□□ -1.06
USP4-211ENST00000485450 ADORA2AP29274 412 aa8.46□□□□□ -1.06
USP4-211ENST00000485450 SREBF1P36956 1147 aa8.46□□□□□ -1.06
USP4-211ENST00000485450 PSMC4P43686 418 aa8.46□□□□□ -1.06
USP4-211ENST00000485450 ALDH5A1P51649 535 aaPredicted RBP8.46□□□□□ -1.06
USP4-211ENST00000485450 NCAPHQ15003 741 aa8.46□□□□□ -1.06
USP4-211ENST00000485450 WDR93Q6P2C0 686 aa8.46□□□□□ -1.06
USP4-211ENST00000485450 CCDC73Q6ZRK6 1079 aa8.46□□□□□ -1.06
USP4-211ENST00000485450 IGSF22Q8N9C0 903 aa8.46□□□□□ -1.06
USP4-211ENST00000485450 AGBL1Q96MI9 1066 aa8.46□□□□□ -1.06
USP4-211ENST00000485450 INPP4AQ96PE3 977 aaPredicted RBP8.46□□□□□ -1.06
USP4-211ENST00000485450 CDC23Q9UJX2 597 aa8.46□□□□□ -1.06
USP4-211ENST00000485450 RCOR1Q9UKL0 485 aa8.46□□□□□ -1.06
USP4-211ENST00000485450 UBIAD1Q9Y5Z9 338 aa8.46□□□□□ -1.06
USP4-211ENST00000485450 IGKV6D-21A0A0A0MT36 114 aa8.45□□□□□ -1.06
USP4-211ENST00000485450 NKRFO15226 690 aaKnown RBP eCLIP8.45□□□□□ -1.06
USP4-211ENST00000485450 ADAMTS4O75173 837 aa8.45□□□□□ -1.06
USP4-211ENST00000485450 RGS20O76081 388 aa8.45□□□□□ -1.06
USP4-211ENST00000485450 ATG7O95352 703 aa8.45□□□□□ -1.06
USP4-211ENST00000485450 TPP2P29144 1249 aaPredicted RBP8.45□□□□□ -1.06
USP4-211ENST00000485450 NAP1L1P55209 391 aaKnown RBP8.45□□□□□ -1.06
USP4-211ENST00000485450 FANCCQ00597 558 aa8.45□□□□□ -1.06
USP4-211ENST00000485450 RTN1Q16799 776 aa8.45□□□□□ -1.06
USP4-211ENST00000485450 SPATS2Q86XZ4 545 aaKnown RBP8.45□□□□□ -1.06
USP4-211ENST00000485450 NUDT12Q9BQG2 462 aa8.45□□□□□ -1.06
USP4-211ENST00000485450 STX8Q9UNK0 236 aa8.45□□□□□ -1.06
USP4-211ENST00000485450 FCER1AP12319 257 aa8.45□□□□□ -1.06
USP4-211ENST00000485450 GJA8P48165 433 aa8.45□□□□□ -1.06
USP4-211ENST00000485450 ACTN3Q08043 901 aaPredicted RBP8.45□□□□□ -1.06
USP4-211ENST00000485450 SNRNP48Q6IEG0 339 aaKnown RBP8.45□□□□□ -1.06
USP4-211ENST00000485450 FBXO11Q86XK2 927 aa8.45□□□□□ -1.06
USP4-211ENST00000485450 CCDC12Q8WUD4 166 aaPredicted RBP8.45□□□□□ -1.06
USP4-211ENST00000485450 SLC35B4Q969S0 331 aa8.45□□□□□ -1.06
USP4-211ENST00000485450 PXMP2Q9NR77 195 aa8.45□□□□□ -1.06
USP4-211ENST00000485450 NUB1Q9Y5A7 615 aa8.45□□□□□ -1.06
USP4-211ENST00000485450 PTCH2Q9Y6C5 1203 aa8.45□□□□□ -1.06
USP4-211ENST00000485450 RALGAPA2Q2PPJ7 1873 aa8.45□□□□□ -1.06
USP4-211ENST00000485450 IGLV3-22A0A075B6J6 115 aa8.45□□□□□ -1.06
USP4-211ENST00000485450 KLF18A0A0U1RQI7 1052 aa8.45□□□□□ -1.06
USP4-211ENST00000485450 DEXIO95424 95 aa8.45□□□□□ -1.06
USP4-211ENST00000485450 SCNN1BP51168 640 aa8.45□□□□□ -1.06
USP4-211ENST00000485450 GJA9P57773 515 aa8.45□□□□□ -1.06
USP4-211ENST00000485450 SKIDA1Q1XH10 827 aa8.45□□□□□ -1.06
USP4-211ENST00000485450 Q4G0T1 1027 aa8.45□□□□□ -1.06
USP4-211ENST00000485450 MAGEC3Q8TD91 643 aa8.45□□□□□ -1.06
USP4-211ENST00000485450 MMP19Q99542 508 aa8.45□□□□□ -1.06
USP4-211ENST00000485450 ZSWIM4Q9H7M6 989 aa8.45□□□□□ -1.06
USP4-211ENST00000485450 IKBKBO14920 756 aa8.44□□□□□ -1.06
USP4-211ENST00000485450 EIF3HO15372 352 aaKnown RBP eCLIP8.44□□□□□ -1.063e-7■■■■□ 20.2
USP4-211ENST00000485450 CBFA2T2O43439 604 aa8.44□□□□□ -1.06
USP4-211ENST00000485450 STX10O60499 249 aa8.44□□□□□ -1.06
USP4-211ENST00000485450 MSCO60682 206 aa8.44□□□□□ -1.06
USP4-211ENST00000485450 SCG2P13521 617 aa8.44□□□□□ -1.06
USP4-211ENST00000485450 ADD1P35611 737 aaKnown RBP8.44□□□□□ -1.06
USP4-211ENST00000485450 PEX19P40855 299 aa8.44□□□□□ -1.06
USP4-211ENST00000485450 SMTNP53814 917 aa8.44□□□□□ -1.06
USP4-211ENST00000485450 DPCR1Q3MIW9 517 aa8.44□□□□□ -1.06
USP4-211ENST00000485450 B4GALNT4Q76KP1 1039 aa8.44□□□□□ -1.06
USP4-211ENST00000485450 YTHDF3Q7Z739 585 aaKnown RBP8.44□□□□□ -1.06
USP4-211ENST00000485450 VSIG10LQ86VR7 867 aa8.44□□□□□ -1.06
USP4-211ENST00000485450 VSTM4Q8IW00 320 aa8.44□□□□□ -1.06
USP4-211ENST00000485450 SPICE1Q8N0Z3 855 aa8.44□□□□□ -1.06
USP4-211ENST00000485450 NME8Q8N427 588 aa8.44□□□□□ -1.06
USP4-211ENST00000485450 B4GALNT2Q8NHY0 566 aa8.44□□□□□ -1.06
USP4-211ENST00000485450 BCAS4Q8TDM0 211 aa8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms