RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 LONRF1Q17RB8 773 aa15.61■□□□□ 0.09
SDC1-201ENST00000254351 RNF25Q96BH1 459 aaPredicted RBP15.61■□□□□ 0.09
SDC1-201ENST00000254351 ZNF317Q96PQ6 595 aaPredicted RBP15.61■□□□□ 0.09
SDC1-201ENST00000254351 PIGSQ96S52 555 aa15.61■□□□□ 0.09
SDC1-201ENST00000254351 ADAM33Q9BZ11 813 aa15.61■□□□□ 0.09
SDC1-201ENST00000254351 BCAS3Q9H6U6 928 aa15.61■□□□□ 0.09
SDC1-201ENST00000254351 NOP53Q9NZM5 478 aaKnown RBP15.61■□□□□ 0.09
SDC1-201ENST00000254351 GGA2Q9UJY4 613 aa15.61■□□□□ 0.09
SDC1-201ENST00000254351 MYL1P05976 194 aa15.61■□□□□ 0.09
SDC1-201ENST00000254351 EGFL6Q8IUX8 553 aa15.61■□□□□ 0.09
SDC1-201ENST00000254351 TBC1D22AQ8WUA7 517 aa15.61■□□□□ 0.09
SDC1-201ENST00000254351 C18orf8Q96DM3 657 aa15.61■□□□□ 0.09
SDC1-201ENST00000254351 TMEM59LQ9UK28 342 aa15.61■□□□□ 0.09
SDC1-201ENST00000254351 TOGARAM1Q9Y4F4 1720 aa15.61■□□□□ 0.09
SDC1-201ENST00000254351 C5orf60A6NFR6 353 aa15.6■□□□□ 0.09
SDC1-201ENST00000254351 ACSL3O95573 720 aa15.6■□□□□ 0.09
SDC1-201ENST00000254351 PMS2P54278 862 aa15.6■□□□□ 0.09
SDC1-201ENST00000254351 DR1Q01658 176 aa15.6■□□□□ 0.09
SDC1-201ENST00000254351 COASYQ13057 564 aa15.6■□□□□ 0.09
SDC1-201ENST00000254351 FAM43BQ6ZT52 329 aaPredicted RBP15.6■□□□□ 0.09
SDC1-201ENST00000254351 SLC51AQ86UW1 340 aa15.6■□□□□ 0.09
SDC1-201ENST00000254351 BARHL2Q9NY43 387 aa15.6■□□□□ 0.09
SDC1-201ENST00000254351 NAGPAQ9UK23 515 aa15.6■□□□□ 0.09
SDC1-201ENST00000254351 PPP1R9AQ9ULJ8 1098 aa15.6■□□□□ 0.09
SDC1-201ENST00000254351 MYBP10242 640 aa15.6■□□□□ 0.09
SDC1-201ENST00000254351 NQO1P15559 274 aaKnown RBP15.6■□□□□ 0.09
SDC1-201ENST00000254351 SESN3P58005 492 aa15.6■□□□□ 0.09
SDC1-201ENST00000254351 AGBL2Q5U5Z8 902 aa15.6■□□□□ 0.09
SDC1-201ENST00000254351 GUF1Q8N442 669 aaKnown RBP15.6■□□□□ 0.09
SDC1-201ENST00000254351 TPCN2Q8NHX9 752 aa15.6■□□□□ 0.09
SDC1-201ENST00000254351 HOOK2Q96ED9 719 aa15.6■□□□□ 0.09
SDC1-201ENST00000254351 CTNNAL1Q9UBT7 734 aa15.6■□□□□ 0.09
SDC1-201ENST00000254351 AJAP1Q9UKB5 411 aaPredicted RBP15.6■□□□□ 0.09
SDC1-201ENST00000254351 TAF11Q15544 211 aa15.59■□□□□ 0.09
SDC1-201ENST00000254351 UBE2SQ16763 222 aa15.59■□□□□ 0.09
SDC1-201ENST00000254351 CAVIN4Q5BKX8 364 aa15.59■□□□□ 0.09
SDC1-201ENST00000254351 FAM26FQ5R3K3 315 aa15.59■□□□□ 0.09
SDC1-201ENST00000254351 KRT79Q5XKE5 535 aa15.59■□□□□ 0.09
SDC1-201ENST00000254351 GLYCTKQ8IVS8 523 aa15.59■□□□□ 0.09
SDC1-201ENST00000254351 AFF2P51816 1311 aa15.59■□□□□ 0.09
SDC1-201ENST00000254351 GH1P01241 217 aa15.59■□□□□ 0.09
SDC1-201ENST00000254351 ERFP50548 548 aa15.59■□□□□ 0.09
SDC1-201ENST00000254351 NCALDP61601 193 aa15.59■□□□□ 0.09
SDC1-201ENST00000254351 NEK9Q8TD19 979 aa15.59■□□□□ 0.09
SDC1-201ENST00000254351 ATXN2LQ8WWM7 1075 aaKnown RBP15.59■□□□□ 0.09
SDC1-201ENST00000254351 MTA3Q9BTC8 594 aa15.59■□□□□ 0.09
SDC1-201ENST00000254351 CRNKL1Q9BZJ0 848 aaKnown RBP15.59■□□□□ 0.09
SDC1-201ENST00000254351 ZMYND8Q9ULU4 1186 aaPredicted RBP15.59■□□□□ 0.09
SDC1-201ENST00000254351 NIP7Q9Y221 180 aaKnown RBP eCLIP15.59■□□□□ 0.09
SDC1-201ENST00000254351 M0R2N6 131 aa15.59■□□□□ 0.09
SDC1-201ENST00000254351 CLIC2O15247 247 aa15.59■□□□□ 0.09
SDC1-201ENST00000254351 RARAP10276 462 aa15.59■□□□□ 0.09
SDC1-201ENST00000254351 NR2F2P24468 414 aa15.59■□□□□ 0.09
SDC1-201ENST00000254351 KCNJ1P48048 391 aa15.59■□□□□ 0.09
SDC1-201ENST00000254351 INHBEP58166 350 aa15.59■□□□□ 0.09
SDC1-201ENST00000254351 LRRC63Q05C16 580 aa15.59■□□□□ 0.09
SDC1-201ENST00000254351 AP1ARQ63HQ0 302 aa15.59■□□□□ 0.09
SDC1-201ENST00000254351 RBM46Q8TBY0 533 aaKnown RBP15.59■□□□□ 0.09
SDC1-201ENST00000254351 CALR3Q96L12 384 aaKnown RBP15.59■□□□□ 0.09
SDC1-201ENST00000254351 ADAM7Q9H2U9 754 aa15.59■□□□□ 0.09
SDC1-201ENST00000254351 SLC12A4Q9UP95 1085 aa15.59■□□□□ 0.09
SDC1-201ENST00000254351 DAAM1Q9Y4D1 1078 aa15.59■□□□□ 0.09
SDC1-201ENST00000254351 RBAK-RBAKDNI3L0D1 243 aa15.58■□□□□ 0.08
SDC1-201ENST00000254351 MEIS1O00470 390 aa15.58■□□□□ 0.08
SDC1-201ENST00000254351 ANKRD20A2Q5SQ80 823 aa15.58■□□□□ 0.08
SDC1-201ENST00000254351 ANKRD20A1Q5TYW2 823 aa15.58■□□□□ 0.08
SDC1-201ENST00000254351 ANKRD20A3Q5VUR7 823 aa15.58■□□□□ 0.08
SDC1-201ENST00000254351 HOOK3Q86VS8 718 aa15.58■□□□□ 0.08
SDC1-201ENST00000254351 ZNF444Q8N0Y2 327 aaPredicted RBP15.58■□□□□ 0.08
SDC1-201ENST00000254351 TMEM237Q96Q45 408 aa15.58■□□□□ 0.08
SDC1-201ENST00000254351 EBF2Q9HAK2 575 aa15.58■□□□□ 0.08
SDC1-201ENST00000254351 UCHL3P15374 230 aa15.58■□□□□ 0.08
SDC1-201ENST00000254351 DIXDC1Q155Q3 683 aa15.58■□□□□ 0.08
SDC1-201ENST00000254351 FAM98CQ17RN3 349 aaKnown RBP15.58■□□□□ 0.08
SDC1-201ENST00000254351 CCDC152Q4G0S7 254 aa15.58■□□□□ 0.08
SDC1-201ENST00000254351 CLEC10AQ8IUN9 316 aa15.58■□□□□ 0.08
SDC1-201ENST00000254351 SH3RF3Q8TEJ3 882 aaPredicted RBP15.58■□□□□ 0.08
SDC1-201ENST00000254351 PBKQ96KB5 322 aa15.58■□□□□ 0.08
SDC1-201ENST00000254351 POP1Q99575 1024 aaKnown RBP15.58■□□□□ 0.08
SDC1-201ENST00000254351 BRIP1Q9BX63 1249 aa15.58■□□□□ 0.08
SDC1-201ENST00000254351 KIAA1024Q9UPX6 916 aa15.58■□□□□ 0.08
SDC1-201ENST00000254351 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.58■□□□□ 0.08
SDC1-201ENST00000254351 PCDHB13Q9Y5F0 798 aa15.58■□□□□ 0.08
SDC1-201ENST00000254351 H2AFZP0C0S5 128 aa15.57■□□□□ 0.08
SDC1-201ENST00000254351 IRX1P78414 480 aaPredicted RBP15.57■□□□□ 0.08
SDC1-201ENST00000254351 C3orf67Q6ZVT6 689 aa15.57■□□□□ 0.08
SDC1-201ENST00000254351 H2AFVQ71UI9 128 aa15.57■□□□□ 0.08
SDC1-201ENST00000254351 REXO1Q8N1G1 1221 aaKnown RBP15.57■□□□□ 0.08
SDC1-201ENST00000254351 LRRC57Q8N9N7 239 aa15.57■□□□□ 0.08
SDC1-201ENST00000254351 ACTRT1Q8TDG2 376 aa15.57■□□□□ 0.08
SDC1-201ENST00000254351 ATP8B4Q8TF62 1192 aa15.57■□□□□ 0.08
SDC1-201ENST00000254351 RAD54LQ92698 747 aa15.57■□□□□ 0.08
SDC1-201ENST00000254351 TMEM47Q9BQJ4 181 aa15.57■□□□□ 0.08
SDC1-201ENST00000254351 OSBPL1AQ9BXW6 950 aa15.57■□□□□ 0.08
SDC1-201ENST00000254351 CUEDC2Q9H467 287 aa15.57■□□□□ 0.08
SDC1-201ENST00000254351 SEC63Q9UGP8 760 aaKnown RBP15.57■□□□□ 0.08
SDC1-201ENST00000254351 PAPPAQ13219 1627 aa15.57■□□□□ 0.08
SDC1-201ENST00000254351 PCK1P35558 622 aa15.57■□□□□ 0.08
SDC1-201ENST00000254351 ABL2P42684 1182 aa15.57■□□□□ 0.08
SDC1-201ENST00000254351 VPS41P49754 854 aa15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 101.2 ms