RNA–Protein interactions for RNA: ENST00000626109.1

LINC00538-201, long intergenic non-protein coding RNA 538, humanhuman

BASIC

Gene LINC00538, Length 1,906 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00538-201ENST00000626109 BTNL9Q6UXG8 535 aa12.86□□□□□ -0.35
LINC00538-201ENST00000626109 CATSPERGQ6ZRH7 1159 aa12.86□□□□□ -0.35
LINC00538-201ENST00000626109 PDCL2Q8N4E4 241 aa12.86□□□□□ -0.35
LINC00538-201ENST00000626109 TTC8Q8TAM2 541 aa12.86□□□□□ -0.35
LINC00538-201ENST00000626109 PGBD4Q96DM1 585 aa12.86□□□□□ -0.35
LINC00538-201ENST00000626109 ALG1Q9BT22 464 aa12.86□□□□□ -0.35
LINC00538-201ENST00000626109 SPZ1Q9BXG8 430 aa12.86□□□□□ -0.35
LINC00538-201ENST00000626109 KCND1Q9NSA2 647 aa12.86□□□□□ -0.35
LINC00538-201ENST00000626109 PNMA3Q9UL41 463 aa12.86□□□□□ -0.35
LINC00538-201ENST00000626109 BTBD19C9JJ37 291 aa12.85□□□□□ -0.35
LINC00538-201ENST00000626109 IFNAR1P17181 557 aa12.85□□□□□ -0.35
LINC00538-201ENST00000626109 HTRA3P83110 453 aa12.85□□□□□ -0.35
LINC00538-201ENST00000626109 PTGDRQ13258 359 aa12.85□□□□□ -0.35
LINC00538-201ENST00000626109 OTUD7BQ6GQQ9 843 aa12.85□□□□□ -0.35
LINC00538-201ENST00000626109 CMTR1Q8N1G2 835 aaKnown RBP12.85□□□□□ -0.35
LINC00538-201ENST00000626109 MICALL1Q8N3F8 863 aa12.85□□□□□ -0.35
LINC00538-201ENST00000626109 SRBD1Q8N5C6 995 aaKnown RBP12.85□□□□□ -0.35
LINC00538-201ENST00000626109 CCDC150Q8NCX0 1101 aa12.85□□□□□ -0.35
LINC00538-201ENST00000626109 JPH3Q8WXH2 748 aaPredicted RBP12.85□□□□□ -0.35
LINC00538-201ENST00000626109 KIFC2Q96AC6 838 aa12.85□□□□□ -0.35
LINC00538-201ENST00000626109 DUSP9Q99956 384 aaKnown RBP12.85□□□□□ -0.35
LINC00538-201ENST00000626109 CPVLQ9H3G5 476 aa12.85□□□□□ -0.35
LINC00538-201ENST00000626109 FBXO28Q9NVF7 368 aa12.85□□□□□ -0.35
LINC00538-201ENST00000626109 HOOK1Q9UJC3 728 aaKnown RBP12.85□□□□□ -0.35
LINC00538-201ENST00000626109 GTF2A1LQ9UNN4 478 aa12.85□□□□□ -0.35
LINC00538-201ENST00000626109 MYPNQ86TC9 1320 aa12.85□□□□□ -0.35
LINC00538-201ENST00000626109 FAM221BA6H8Z2 402 aa12.84□□□□□ -0.35
LINC00538-201ENST00000626109 ARHGAP4P98171 946 aa12.84□□□□□ -0.35
LINC00538-201ENST00000626109 AKAP17AQ02040 695 aaKnown RBP12.84□□□□□ -0.35
LINC00538-201ENST00000626109 COG2Q14746 738 aa12.84□□□□□ -0.35
LINC00538-201ENST00000626109 NTRK3Q16288 839 aa12.84□□□□□ -0.35
LINC00538-201ENST00000626109 REM2Q8IYK8 340 aaPredicted RBP12.84□□□□□ -0.35
LINC00538-201ENST00000626109 TRIM22Q8IYM9 498 aa12.84□□□□□ -0.35
LINC00538-201ENST00000626109 APPL2Q8NEU8 664 aa12.84□□□□□ -0.35
LINC00538-201ENST00000626109 ZFPM2Q8WW38 1151 aa12.84□□□□□ -0.35
LINC00538-201ENST00000626109 ANKRD7Q92527 254 aa12.84□□□□□ -0.35
LINC00538-201ENST00000626109 IWS1Q96ST2 819 aa12.84□□□□□ -0.35
LINC00538-201ENST00000626109 CGNQ9P2M7 1197 aaKnown RBP12.84□□□□□ -0.35
LINC00538-201ENST00000626109 PPP1R9AQ9ULJ8 1098 aa12.84□□□□□ -0.35
LINC00538-201ENST00000626109 ATP8A1Q9Y2Q0 1164 aa12.84□□□□□ -0.35
LINC00538-201ENST00000626109 CNTNAP5Q8WYK1 1306 aa12.84□□□□□ -0.35
LINC00538-201ENST00000626109 PDHXO00330 501 aa12.84□□□□□ -0.35
LINC00538-201ENST00000626109 IKBKBO14920 756 aa12.84□□□□□ -0.35
LINC00538-201ENST00000626109 SYKP43405 635 aa12.84□□□□□ -0.35
LINC00538-201ENST00000626109 EPHB1P54762 984 aa12.84□□□□□ -0.35
LINC00538-201ENST00000626109 SSRP1Q08945 709 aaKnown RBP12.84□□□□□ -0.35
LINC00538-201ENST00000626109 PPP1R15BQ5SWA1 713 aa12.84□□□□□ -0.35
LINC00538-201ENST00000626109 HYIQ5T013 277 aa12.84□□□□□ -0.35
LINC00538-201ENST00000626109 CFAP161Q6P656 301 aa12.84□□□□□ -0.35
LINC00538-201ENST00000626109 ADGRF4Q8IZF3 695 aa12.84□□□□□ -0.35
LINC00538-201ENST00000626109 RRP36Q96EU6 259 aaKnown RBP12.84□□□□□ -0.35
LINC00538-201ENST00000626109 SLC26A6Q9BXS9 759 aa12.84□□□□□ -0.35
LINC00538-201ENST00000626109 RNF26Q9BY78 433 aaPredicted RBP12.84□□□□□ -0.35
LINC00538-201ENST00000626109 ASCC2Q9H1I8 757 aaPredicted RBP12.84□□□□□ -0.35
LINC00538-201ENST00000626109 RIOX1Q9H6W3 641 aa12.84□□□□□ -0.35
LINC00538-201ENST00000626109 VAT1LQ9HCJ6 419 aa12.84□□□□□ -0.35
LINC00538-201ENST00000626109 ZCCHC17Q9NP64 241 aaKnown RBP12.84□□□□□ -0.35
LINC00538-201ENST00000626109 HOXC10Q9NYD6 342 aa12.84□□□□□ -0.35
LINC00538-201ENST00000626109 SEC63Q9UGP8 760 aaKnown RBP12.84□□□□□ -0.35
LINC00538-201ENST00000626109 DDX41Q9UJV9 622 aaKnown RBP12.84□□□□□ -0.35
LINC00538-201ENST00000626109 PIK3CDO00329 1044 aa12.83□□□□□ -0.36
LINC00538-201ENST00000626109 CCP110O43303 1012 aa12.83□□□□□ -0.36
LINC00538-201ENST00000626109 CYTH3O43739 400 aa12.83□□□□□ -0.36
LINC00538-201ENST00000626109 KIF5CO60282 957 aa12.83□□□□□ -0.36
LINC00538-201ENST00000626109 AOC2O75106 756 aa12.83□□□□□ -0.36
LINC00538-201ENST00000626109 TCEA3O75764 348 aa12.83□□□□□ -0.36
LINC00538-201ENST00000626109 FDX1P10109 184 aa12.83□□□□□ -0.36
LINC00538-201ENST00000626109 PFKFB1P16118 471 aa12.83□□□□□ -0.36
LINC00538-201ENST00000626109 DSG3P32926 999 aa12.83□□□□□ -0.36
LINC00538-201ENST00000626109 FUT2Q10981 343 aa12.83□□□□□ -0.36
LINC00538-201ENST00000626109 SAFBQ15424 915 aaKnown RBP eCLIP12.83□□□□□ -0.36
LINC00538-201ENST00000626109 KRT40Q6A162 431 aa12.83□□□□□ -0.36
LINC00538-201ENST00000626109 METTL3Q86U44 580 aaKnown RBP12.83□□□□□ -0.36
LINC00538-201ENST00000626109 HOMER1Q86YM7 354 aa12.83□□□□□ -0.36
LINC00538-201ENST00000626109 PHKBQ93100 1093 aa12.83□□□□□ -0.36
LINC00538-201ENST00000626109 PARK7Q99497 189 aaKnown RBP12.83□□□□□ -0.36
LINC00538-201ENST00000626109 PTPN18Q99952 460 aa12.83□□□□□ -0.36
LINC00538-201ENST00000626109 SNTG2Q9NY99 539 aa12.83□□□□□ -0.36
LINC00538-201ENST00000626109 STK36Q9NRP7 1315 aa12.82□□□□□ -0.36
LINC00538-201ENST00000626109 ZBED4O75132 1171 aa12.82□□□□□ -0.36
LINC00538-201ENST00000626109 RHOBTB3O94955 611 aa12.82□□□□□ -0.36
LINC00538-201ENST00000626109 SMC2O95347 1197 aa12.82□□□□□ -0.36
LINC00538-201ENST00000626109 FMNL1O95466 1100 aaPredicted RBP12.82□□□□□ -0.36
LINC00538-201ENST00000626109 TM4SF4P48230 202 aa12.82□□□□□ -0.36
LINC00538-201ENST00000626109 VEGFBP49765 207 aa12.82□□□□□ -0.36
LINC00538-201ENST00000626109 RAB27AP51159 221 aa12.82□□□□□ -0.36
LINC00538-201ENST00000626109 IL31Q6EBC2 164 aa12.82□□□□□ -0.36
LINC00538-201ENST00000626109 KLHL10Q6JEL2 608 aa12.82□□□□□ -0.36
LINC00538-201ENST00000626109 EP400NLQ6ZTU2 488 aa12.82□□□□□ -0.36
LINC00538-201ENST00000626109 RASSF3Q86WH2 238 aa12.82□□□□□ -0.36
LINC00538-201ENST00000626109 IFNL1Q8IU54 200 aa12.82□□□□□ -0.36
LINC00538-201ENST00000626109 SAMD14Q8IZD0 417 aaPredicted RBP12.82□□□□□ -0.36
LINC00538-201ENST00000626109 ARL6IP6Q8N6S5 226 aa12.82□□□□□ -0.36
LINC00538-201ENST00000626109 EFCAB3Q8N7B9 438 aa12.82□□□□□ -0.36
LINC00538-201ENST00000626109 SMCR8Q8TEV9 937 aaPredicted RBP12.82□□□□□ -0.36
LINC00538-201ENST00000626109 GTF3C2Q8WUA4 911 aaPredicted RBP12.82□□□□□ -0.36
LINC00538-201ENST00000626109 ATG4CQ96DT6 458 aa12.82□□□□□ -0.36
LINC00538-201ENST00000626109 ZIC5Q96T25 663 aa12.82□□□□□ -0.36
LINC00538-201ENST00000626109 JMJD4Q9H9V9 463 aa12.82□□□□□ -0.36
LINC00538-201ENST00000626109 SH3GLB2Q9NR46 395 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 118.2 ms