RNA–Protein interactions for RNA: ENST00000597396.5

SHKBP1-214, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 1,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-214ENST00000597396 CTAGE1Q96RT6 745 aa22.1■■□□□ 1.13
SHKBP1-214ENST00000597396 EIF4ENIF1Q9NRA8 985 aaKnown RBP22.1■■□□□ 1.13
SHKBP1-214ENST00000597396 UMODL1Q5DID0 1318 aa22.09■■□□□ 1.13
SHKBP1-214ENST00000597396 ATP4AP20648 1035 aa22.09■■□□□ 1.13
SHKBP1-214ENST00000597396 PRKCEQ02156 737 aa22.09■■□□□ 1.13
SHKBP1-214ENST00000597396 SPIRE1Q08AE8 756 aa22.09■■□□□ 1.13
SHKBP1-214ENST00000597396 PTGDRQ13258 359 aa22.09■■□□□ 1.13
SHKBP1-214ENST00000597396 TMEM266Q2M3C6 531 aa22.09■■□□□ 1.13
SHKBP1-214ENST00000597396 CAGE1Q8TC20 777 aa22.09■■□□□ 1.13
SHKBP1-214ENST00000597396 TUBE1Q9UJT0 475 aa22.09■■□□□ 1.13
SHKBP1-214ENST00000597396 ZNF862O60290 1169 aa22.08■■□□□ 1.13
SHKBP1-214ENST00000597396 DKC1O60832 514 aaKnown RBP eCLIP22.08■■□□□ 1.13
SHKBP1-214ENST00000597396 OATP04181 439 aa22.08■■□□□ 1.13
SHKBP1-214ENST00000597396 PDIA4P13667 645 aaKnown RBP22.08■■□□□ 1.13
SHKBP1-214ENST00000597396 CCL23P55773 120 aa22.08■■□□□ 1.13
SHKBP1-214ENST00000597396 PSMC5P62195 406 aa22.08■■□□□ 1.13
SHKBP1-214ENST00000597396 RESTQ13127 1097 aa22.08■■□□□ 1.13
SHKBP1-214ENST00000597396 ZNF484Q5JVG2 852 aa22.08■■□□□ 1.13
SHKBP1-214ENST00000597396 MFSD5Q6N075 450 aa22.08■■□□□ 1.13
SHKBP1-214ENST00000597396 SERINC5Q86VE9 423 aa22.08■■□□□ 1.13
SHKBP1-214ENST00000597396 TMEM199Q8N511 208 aa22.08■■□□□ 1.13
SHKBP1-214ENST00000597396 TRAPPC12Q8WVT3 735 aa22.08■■□□□ 1.13
SHKBP1-214ENST00000597396 DHX38Q92620 1227 aaKnown RBP22.08■■□□□ 1.13
SHKBP1-214ENST00000597396 NRBP2Q9NSY0 501 aa22.08■■□□□ 1.13
SHKBP1-214ENST00000597396 COL1A2P08123 1366 aa22.08■■□□□ 1.12
SHKBP1-214ENST00000597396 ARID2Q68CP9 1835 aa22.08■■□□□ 1.12
SHKBP1-214ENST00000597396 LOXHD1Q8IVV2 1947 aa22.08■■□□□ 1.12
SHKBP1-214ENST00000597396 POTEMA6NI47 508 aa22.07■■□□□ 1.12
SHKBP1-214ENST00000597396 LAD1O00515 517 aa22.07■■□□□ 1.12
SHKBP1-214ENST00000597396 PITPNM1O00562 1244 aa22.07■■□□□ 1.12
SHKBP1-214ENST00000597396 P4HBP07237 508 aaKnown RBP22.07■■□□□ 1.12
SHKBP1-214ENST00000597396 TECP42680 631 aa22.07■■□□□ 1.12
SHKBP1-214ENST00000597396 QARSP47897 775 aaKnown RBP22.07■■□□□ 1.12
SHKBP1-214ENST00000597396 ADAM17P78536 824 aa22.07■■□□□ 1.12
SHKBP1-214ENST00000597396 FPGSQ05932 587 aa22.07■■□□□ 1.12
SHKBP1-214ENST00000597396 C4orf32Q8N8J7 132 aa22.07■■□□□ 1.12
SHKBP1-214ENST00000597396 UBE2OQ9C0C9 1292 aaKnown RBP22.07■■□□□ 1.12
SHKBP1-214ENST00000597396 ZSCAN16Q9H4T2 348 aaPredicted RBP22.07■■□□□ 1.12
SHKBP1-214ENST00000597396 CEP131Q9UPN4 1083 aa22.07■■□□□ 1.12
SHKBP1-214ENST00000597396 XKR3Q5GH77 459 aa22.06■■□□□ 1.12
SHKBP1-214ENST00000597396 WNT8BQ93098 351 aa22.06■■□□□ 1.12
SHKBP1-214ENST00000597396 DYDC2Q96IM9 177 aa22.06■■□□□ 1.12
SHKBP1-214ENST00000597396 EIF2AK1Q9BQI3 630 aaKnown RBP22.06■■□□□ 1.12
SHKBP1-214ENST00000597396 LXNQ9BS40 222 aa22.06■■□□□ 1.12
SHKBP1-214ENST00000597396 WNT8AQ9H1J5 351 aa22.06■■□□□ 1.12
SHKBP1-214ENST00000597396 RGL1Q9NZL6 768 aa22.06■■□□□ 1.12
SHKBP1-214ENST00000597396 SEPT9Q9UHD8 586 aaPredicted RBP22.06■■□□□ 1.12
SHKBP1-214ENST00000597396 MBLAC1A4D2B0 266 aaPredicted RBP22.05■■□□□ 1.12
SHKBP1-214ENST00000597396 CKBP12277 381 aa22.05■■□□□ 1.12
SHKBP1-214ENST00000597396 THPOP40225 353 aa22.05■■□□□ 1.12
SHKBP1-214ENST00000597396 CYP4A11Q02928 519 aa22.05■■□□□ 1.12
SHKBP1-214ENST00000597396 PPIGQ13427 754 aaKnown RBP eCLIP22.05■■□□□ 1.12
SHKBP1-214ENST00000597396 MARCH8Q5T0T0 291 aa22.05■■□□□ 1.12
SHKBP1-214ENST00000597396 TAF2Q6P1X5 1199 aa22.05■■□□□ 1.12
SHKBP1-214ENST00000597396 TDHQ8IZJ6 230 aa22.05■■□□□ 1.12
SHKBP1-214ENST00000597396 NEK9Q8TD19 979 aa22.05■■□□□ 1.12
SHKBP1-214ENST00000597396 SCLYQ96I15 445 aa22.05■■□□□ 1.12
SHKBP1-214ENST00000597396 RAB34Q9BZG1 259 aa22.05■■□□□ 1.12
SHKBP1-214ENST00000597396 DDX11L8A8MPP1 907 aa22.04■■□□□ 1.12
SHKBP1-214ENST00000597396 BMP15O95972 392 aa22.04■■□□□ 1.12
SHKBP1-214ENST00000597396 CSF2RAP15509 400 aa22.04■■□□□ 1.12
SHKBP1-214ENST00000597396 SELPP16109 830 aa22.04■■□□□ 1.12
SHKBP1-214ENST00000597396 PRPHP41219 470 aa22.04■■□□□ 1.12
SHKBP1-214ENST00000597396 FXR2P51116 673 aaKnown RBP eCLIP22.04■■□□□ 1.12
SHKBP1-214ENST00000597396 ATP2C1P98194 919 aaPredicted RBP22.04■■□□□ 1.12
SHKBP1-214ENST00000597396 RBL2Q08999 1139 aa22.04■■□□□ 1.12
SHKBP1-214ENST00000597396 CTTNQ14247 550 aaKnown RBP22.04■■□□□ 1.12
SHKBP1-214ENST00000597396 TRIM71Q2Q1W2 868 aaKnown RBP22.04■■□□□ 1.12
SHKBP1-214ENST00000597396 FOXD4L5Q5VV16 416 aaPredicted RBP22.04■■□□□ 1.12
SHKBP1-214ENST00000597396 MTHFD1LQ6UB35 978 aa22.04■■□□□ 1.12
SHKBP1-214ENST00000597396 RUFY4Q6ZNE9 571 aa22.04■■□□□ 1.12
SHKBP1-214ENST00000597396 LRRC8DQ7L1W4 858 aa22.04■■□□□ 1.12
SHKBP1-214ENST00000597396 RSPH3Q86UC2 560 aa22.04■■□□□ 1.12
SHKBP1-214ENST00000597396 TPH2Q8IWU9 490 aa22.04■■□□□ 1.12
SHKBP1-214ENST00000597396 ERMNQ8TAM6 284 aa22.04■■□□□ 1.12
SHKBP1-214ENST00000597396 FOXD4L4Q8WXT5 416 aaPredicted RBP22.04■■□□□ 1.12
SHKBP1-214ENST00000597396 ZSWIM4Q9H7M6 989 aa22.04■■□□□ 1.12
SHKBP1-214ENST00000597396 TET1Q8NFU7 2136 aa22.03■■□□□ 1.12
SHKBP1-214ENST00000597396 IQCF3P0C7M6 154 aa22.03■■□□□ 1.12
SHKBP1-214ENST00000597396 KLRC1P26715 233 aa22.03■■□□□ 1.12
SHKBP1-214ENST00000597396 MTERF2Q49AM1 385 aa22.03■■□□□ 1.12
SHKBP1-214ENST00000597396 ZNF618Q5T7W0 954 aa22.03■■□□□ 1.12
SHKBP1-214ENST00000597396 FAM173BQ6P4H8 233 aa22.03■■□□□ 1.12
SHKBP1-214ENST00000597396 DTHD1Q6ZMT9 781 aa22.03■■□□□ 1.12
SHKBP1-214ENST00000597396 ZBTB10Q96DT7 871 aa22.03■■□□□ 1.12
SHKBP1-214ENST00000597396 FAM49AQ9H0Q0 323 aaPredicted RBP22.03■■□□□ 1.12
SHKBP1-214ENST00000597396 PCDHA2Q9Y5H9 948 aa22.03■■□□□ 1.12
SHKBP1-214ENST00000597396 LAMA3Q16787 3333 aa22.03■■□□□ 1.12
SHKBP1-214ENST00000597396 SIP14410 1827 aa22.03■■□□□ 1.12
SHKBP1-214ENST00000597396 ZBTB42B2RXF5 422 aa22.02■■□□□ 1.12
SHKBP1-214ENST00000597396 CAND2O75155 1236 aa22.02■■□□□ 1.12
SHKBP1-214ENST00000597396 CTSHP09668 335 aa22.02■■□□□ 1.12
SHKBP1-214ENST00000597396 ZSCAN22P10073 491 aaPredicted RBP22.02■■□□□ 1.12
SHKBP1-214ENST00000597396 SF3A1Q15459 793 aaKnown RBP22.02■■□□□ 1.12
SHKBP1-214ENST00000597396 C4orf19Q8IY42 314 aa22.02■■□□□ 1.12
SHKBP1-214ENST00000597396 DNAJB3Q8WWF6 145 aa22.02■■□□□ 1.12
SHKBP1-214ENST00000597396 LRWD1Q9UFC0 647 aa22.02■■□□□ 1.12
SHKBP1-214ENST00000597396 TMEM150BA6NC51 233 aa22.01■■□□□ 1.11
SHKBP1-214ENST00000597396 MAGEB2O15479 319 aa22.01■■□□□ 1.11
SHKBP1-214ENST00000597396 SLITRK3O94933 977 aa22.01■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms