RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 ZNF302Q9NR11 478 aa34.04■■■■□ 3.04
CTCF-203ENST00000566078 DBR1Q9UK59 544 aaKnown RBP34.04■■■■□ 3.04
CTCF-203ENST00000566078 C11orf97A0A1B0GVM6 126 aaPredicted RBP34.03■■■■□ 3.04
CTCF-203ENST00000566078 PVALEFA0A1B0GWK0 134 aa34.03■■■■□ 3.04
CTCF-203ENST00000566078 CYP2C19P33261 490 aa34.03■■■■□ 3.04
CTCF-203ENST00000566078 RAD51AP2Q09MP3 1159 aa34.03■■■■□ 3.04
CTCF-203ENST00000566078 GJC2Q5T442 439 aaPredicted RBP34.03■■■■□ 3.04
CTCF-203ENST00000566078 ZNF658Q5TYW1 1059 aaPredicted RBP34.03■■■■□ 3.04
CTCF-203ENST00000566078 MLKLQ8NB16 471 aa34.03■■■■□ 3.04
CTCF-203ENST00000566078 SEPT1Q8WYJ6 367 aa34.03■■■■□ 3.04
CTCF-203ENST00000566078 GPR20Q99678 358 aa34.03■■■■□ 3.04
CTCF-203ENST00000566078 ZNF862O60290 1169 aa34.02■■■■□ 3.04
CTCF-203ENST00000566078 GH1P01241 217 aa34.02■■■■□ 3.04
CTCF-203ENST00000566078 PTGS1P23219 599 aa34.02■■■■□ 3.04
CTCF-203ENST00000566078 TCF7P36402 384 aaPredicted RBP34.02■■■■□ 3.04
CTCF-203ENST00000566078 CAP1Q01518 475 aa34.02■■■■□ 3.04
CTCF-203ENST00000566078 CACNB1Q02641 598 aaPredicted RBP34.02■■■■□ 3.04
CTCF-203ENST00000566078 ARHGAP1Q07960 439 aa34.02■■■■□ 3.04
CTCF-203ENST00000566078 HSDL1Q3SXM5 330 aa34.02■■■■□ 3.04
CTCF-203ENST00000566078 RINT1Q6NUQ1 792 aa34.02■■■■□ 3.04
CTCF-203ENST00000566078 SMYD4Q8IYR2 804 aaPredicted RBP34.02■■■■□ 3.04
CTCF-203ENST00000566078 CCDC43Q96MW1 224 aaKnown RBP34.02■■■■□ 3.04
CTCF-203ENST00000566078 DACH1Q9UI36 760 aa34.02■■■■□ 3.04
CTCF-203ENST00000566078 IGKV6D-21A0A0A0MT36 114 aa34.01■■■■□ 3.04
CTCF-203ENST00000566078 MRE11P49959 708 aa34.01■■■■□ 3.04
CTCF-203ENST00000566078 PRKCZQ05513 592 aa34.01■■■■□ 3.04
CTCF-203ENST00000566078 CCDC144BQ3MJ40 725 aa34.01■■■■□ 3.04
CTCF-203ENST00000566078 PRAMEF19Q5SWL8 479 aa34.01■■■■□ 3.04
CTCF-203ENST00000566078 TRMT1LQ7Z2T5 733 aaKnown RBP34.01■■■■□ 3.04
CTCF-203ENST00000566078 PCNTO95613 3336 aa34.01■■■■□ 3.03
CTCF-203ENST00000566078 XRCC6P12956 609 aaKnown RBP eCLIP34.01■■■■□ 3.03
CTCF-203ENST00000566078 FLT3LGP49771 235 aa34.01■■■■□ 3.03
CTCF-203ENST00000566078 PRKCEQ02156 737 aa34.01■■■■□ 3.03
CTCF-203ENST00000566078 IRF5Q13568 498 aa34.01■■■■□ 3.03
CTCF-203ENST00000566078 GDAQ9Y2T3 454 aa34.01■■■■□ 3.03
CTCF-203ENST00000566078 TMEM150BA6NC51 233 aa34■■■■□ 3.03
CTCF-203ENST00000566078 XRCC5P13010 732 aaKnown RBP34■■■■□ 3.03
CTCF-203ENST00000566078 RARRES1P49788 294 aa34■■■■□ 3.03
CTCF-203ENST00000566078 LAMC2Q13753 1193 aa34■■■■□ 3.03
CTCF-203ENST00000566078 UTP14CQ5TAP6 766 aaKnown RBP34■■■■□ 3.03
CTCF-203ENST00000566078 FAM160B1Q5W0V3 765 aa34■■■■□ 3.03
CTCF-203ENST00000566078 IQSEC1Q6DN90 963 aa34■■■■□ 3.03
CTCF-203ENST00000566078 LUZP1Q86V48 1076 aa34■■■■□ 3.03
CTCF-203ENST00000566078 CD99L2Q8TCZ2 262 aa34■■■■□ 3.03
CTCF-203ENST00000566078 BPIFA3Q9BQP9 254 aa34■■■■□ 3.03
CTCF-203ENST00000566078 REEP2Q9BRK0 252 aa34■■■■□ 3.03
CTCF-203ENST00000566078 ANKEF1Q9NU02 776 aa34■■■■□ 3.03
CTCF-203ENST00000566078 PANK4Q9NVE7 773 aa34■■■■□ 3.03
CTCF-203ENST00000566078 MAFBQ9Y5Q3 323 aaPredicted RBP34■■■■□ 3.03
CTCF-203ENST00000566078 IGHA2P01877 340 aa33.99■■■■□ 3.03
CTCF-203ENST00000566078 SMPD1P17405 629 aa33.99■■■■□ 3.03
CTCF-203ENST00000566078 COASYQ13057 564 aa33.99■■■■□ 3.03
CTCF-203ENST00000566078 GIT2Q14161 759 aa33.99■■■■□ 3.03
CTCF-203ENST00000566078 DUSP28Q4G0W2 176 aa33.99■■■■□ 3.03
CTCF-203ENST00000566078 PLA2G4FQ68DD2 849 aa33.99■■■■□ 3.03
CTCF-203ENST00000566078 C1orf186Q6ZWK4 172 aa33.99■■■■□ 3.03
CTCF-203ENST00000566078 CCDC65Q8IXS2 484 aa33.99■■■■□ 3.03
CTCF-203ENST00000566078 PCYT2Q99447 389 aa33.99■■■■□ 3.03
CTCF-203ENST00000566078 GPR25O00155 361 aa33.98■■■■□ 3.03
CTCF-203ENST00000566078 L1TD1Q5T7N2 865 aaKnown RBP33.98■■■■□ 3.03
CTCF-203ENST00000566078 ANO5Q75V66 913 aa33.98■■■■□ 3.03
CTCF-203ENST00000566078 SAGE1Q9NXZ1 904 aa33.98■■■■□ 3.03
CTCF-203ENST00000566078 KCND2Q9NZV8 630 aa33.98■■■■□ 3.03
CTCF-203ENST00000566078 SEPT9Q9UHD8 586 aaPredicted RBP33.98■■■■□ 3.03
CTCF-203ENST00000566078 STBD1O95210 358 aa33.97■■■■□ 3.03
CTCF-203ENST00000566078 ZNF865P0CJ78 1059 aaPredicted RBP33.97■■■■□ 3.03
CTCF-203ENST00000566078 IQCB1Q15051 598 aa33.97■■■■□ 3.03
CTCF-203ENST00000566078 XKR9Q5GH70 373 aa33.97■■■■□ 3.03
CTCF-203ENST00000566078 PADI6Q6TGC4 694 aa33.97■■■■□ 3.03
CTCF-203ENST00000566078 OTUD6AQ7L8S5 288 aa33.97■■■■□ 3.03
CTCF-203ENST00000566078 AOPEPQ8N6M6 819 aa33.97■■■■□ 3.03
CTCF-203ENST00000566078 AFAP1L1Q8TED9 768 aa33.97■■■■□ 3.03
CTCF-203ENST00000566078 EMID1Q96A84 441 aaPredicted RBP33.97■■■■□ 3.03
CTCF-203ENST00000566078 NKRFO15226 690 aaKnown RBP eCLIP33.97■■■■□ 3.03
CTCF-203ENST00000566078 CD44P16070 742 aaKnown RBP33.97■■■■□ 3.03
CTCF-203ENST00000566078 TNFAIP2Q03169 654 aa33.97■■■■□ 3.03
CTCF-203ENST00000566078 HPS3Q969F9 1004 aa33.97■■■■□ 3.03
CTCF-203ENST00000566078 SH2D3AQ9BRG2 576 aa33.97■■■■□ 3.03
CTCF-203ENST00000566078 AZI2Q9H6S1 392 aa33.97■■■■□ 3.03
CTCF-203ENST00000566078 FRMD3A2A2Y4 597 aa33.96■■■■□ 3.03
CTCF-203ENST00000566078 ADCY6O43306 1168 aa33.96■■■■□ 3.03
CTCF-203ENST00000566078 STAT5BP51692 787 aa33.96■■■■□ 3.03
CTCF-203ENST00000566078 DHX40Q8IX18 779 aaKnown RBP33.96■■■■□ 3.03
CTCF-203ENST00000566078 TRIB2Q92519 343 aa33.96■■■■□ 3.03
CTCF-203ENST00000566078 ZHX3Q9H4I2 956 aa33.96■■■■□ 3.03
CTCF-203ENST00000566078 EMSYQ7Z589 1322 aa33.95■■■■□ 3.03
CTCF-203ENST00000566078 TBCAO75347 108 aaKnown RBP33.95■■■■□ 3.03
CTCF-203ENST00000566078 LGR5O75473 907 aa33.95■■■■□ 3.03
CTCF-203ENST00000566078 OATP04181 439 aa33.95■■■■□ 3.03
CTCF-203ENST00000566078 ATP4AP20648 1035 aa33.95■■■■□ 3.03
CTCF-203ENST00000566078 NPEPPSP55786 919 aa33.95■■■■□ 3.03
CTCF-203ENST00000566078 EHHADHQ08426 723 aa33.95■■■■□ 3.03
CTCF-203ENST00000566078 XKR3Q5GH77 459 aa33.95■■■■□ 3.03
CTCF-203ENST00000566078 GTPBP4Q9BZE4 634 aaKnown RBP33.95■■■■□ 3.03
CTCF-203ENST00000566078 BECN2A8MW95 431 aa33.94■■■■□ 3.02
CTCF-203ENST00000566078 PPP1R3GB7ZBB8 358 aa33.94■■■■□ 3.02
CTCF-203ENST00000566078 USO1O60763 962 aaKnown RBP33.94■■■■□ 3.02
CTCF-203ENST00000566078 HSPA6P17066 643 aa33.94■■■■□ 3.02
CTCF-203ENST00000566078 STK4Q13043 487 aa33.94■■■■□ 3.02
CTCF-203ENST00000566078 OR6J1Q8NGC5 347 aa33.94■■■■□ 3.02
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms