RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 ZNF200P98182 395 aaPredicted RBP6.31□□□□□ -1.4
LINC00560-201ENST00000564593 EPHA7Q15375 998 aa6.31□□□□□ -1.4
LINC00560-201ENST00000564593 NME9Q86XW9 330 aa6.31□□□□□ -1.4
LINC00560-201ENST00000564593 HIPK4Q8NE63 616 aa6.31□□□□□ -1.4
LINC00560-201ENST00000564593 ASB15Q8WXK1 588 aa6.31□□□□□ -1.4
LINC00560-201ENST00000564593 RTF1Q92541 710 aaKnown RBP6.31□□□□□ -1.4
LINC00560-201ENST00000564593 FAM168AQ92567 244 aa6.31□□□□□ -1.4
LINC00560-201ENST00000564593 DDX11Q96FC9 970 aa6.31□□□□□ -1.4
LINC00560-201ENST00000564593 ZDHHC5Q9C0B5 715 aa6.31□□□□□ -1.4
LINC00560-201ENST00000564593 TCEAL9Q9UHQ7 104 aa6.31□□□□□ -1.4
LINC00560-201ENST00000564593 EID1Q9Y6B2 187 aa6.31□□□□□ -1.4
LINC00560-201ENST00000564593 WASHC2AQ641Q2 1341 aa6.31□□□□□ -1.4
LINC00560-201ENST00000564593 CARMIL2Q6F5E8 1435 aa6.31□□□□□ -1.4
LINC00560-201ENST00000564593 LCHNA4D1U4 455 aa6.31□□□□□ -1.4
LINC00560-201ENST00000564593 HRKO00198 91 aa6.31□□□□□ -1.4
LINC00560-201ENST00000564593 FBXO21O94952 628 aa6.31□□□□□ -1.4
LINC00560-201ENST00000564593 TMEM253P0C7T8 217 aa6.31□□□□□ -1.4
LINC00560-201ENST00000564593 STAT5AP42229 794 aa6.31□□□□□ -1.4
LINC00560-201ENST00000564593 EPHB1P54762 984 aa6.31□□□□□ -1.4
LINC00560-201ENST00000564593 SCAND1P57086 179 aa6.31□□□□□ -1.4
LINC00560-201ENST00000564593 ADCY1Q08828 1119 aa6.31□□□□□ -1.4
LINC00560-201ENST00000564593 DBPQ10586 325 aaPredicted RBP6.31□□□□□ -1.4
LINC00560-201ENST00000564593 KLF1Q13351 362 aaPredicted RBP6.31□□□□□ -1.4
LINC00560-201ENST00000564593 PKN1Q16512 942 aa6.31□□□□□ -1.4
LINC00560-201ENST00000564593 TEPPQ6URK8 271 aa6.31□□□□□ -1.4
LINC00560-201ENST00000564593 CMIPQ8IY22 773 aa6.31□□□□□ -1.4
LINC00560-201ENST00000564593 LIN37Q96GY3 246 aaPredicted RBP6.31□□□□□ -1.4
LINC00560-201ENST00000564593 MSRAQ9UJ68 235 aa6.31□□□□□ -1.4
LINC00560-201ENST00000564593 PLA2G2DQ9UNK4 145 aa6.31□□□□□ -1.4
LINC00560-201ENST00000564593 SPEF1Q9Y4P9 236 aa6.31□□□□□ -1.4
LINC00560-201ENST00000564593 TNKSO95271 1327 aa6.3□□□□□ -1.4
LINC00560-201ENST00000564593 ZNF503-AS2A6NEH8 195 aa6.3□□□□□ -1.4
LINC00560-201ENST00000564593 GOLGA8AA7E2F4 631 aa6.3□□□□□ -1.4
LINC00560-201ENST00000564593 GOLGA8BA8MQT2 603 aa6.3□□□□□ -1.4
LINC00560-201ENST00000564593 KDM1AO60341 852 aa6.3□□□□□ -1.4
LINC00560-201ENST00000564593 MYBL2P10244 700 aa6.3□□□□□ -1.4
LINC00560-201ENST00000564593 IARSP41252 1262 aaKnown RBP6.3□□□□□ -1.4
LINC00560-201ENST00000564593 NKX3-2P78367 333 aa6.3□□□□□ -1.4
LINC00560-201ENST00000564593 SRSF3P84103 164 aaKnown RBP6.3□□□□□ -1.4
LINC00560-201ENST00000564593 PTPN21Q16825 1174 aa6.3□□□□□ -1.4
LINC00560-201ENST00000564593 ABCB5Q2M3G0 1257 aa6.3□□□□□ -1.4
LINC00560-201ENST00000564593 KRTAP19-4Q3LI73 84 aa6.3□□□□□ -1.4
LINC00560-201ENST00000564593 CD276Q5ZPR3 534 aa6.3□□□□□ -1.4
LINC00560-201ENST00000564593 CD300LDQ6UXZ3 194 aa6.3□□□□□ -1.4
LINC00560-201ENST00000564593 ZBTB46Q86UZ6 589 aa6.3□□□□□ -1.4
LINC00560-201ENST00000564593 ZC3H18Q86VM9 953 aaKnown RBP6.3□□□□□ -1.4
LINC00560-201ENST00000564593 RAVER1Q8IY67 606 aaKnown RBP6.3□□□□□ -1.4
LINC00560-201ENST00000564593 CBARPQ8N350 705 aaPredicted RBP6.3□□□□□ -1.4
LINC00560-201ENST00000564593 ZNF496Q96IT1 587 aaPredicted RBP6.3□□□□□ -1.4
LINC00560-201ENST00000564593 NGRNQ9NPE2 291 aaKnown RBP6.3□□□□□ -1.4
LINC00560-201ENST00000564593 AASDHPPTQ9NRN7 309 aa6.3□□□□□ -1.4
LINC00560-201ENST00000564593 SIRT5Q9NXA8 310 aa6.3□□□□□ -1.4
LINC00560-201ENST00000564593 ARHGAP28Q9P2N2 729 aa6.3□□□□□ -1.4
LINC00560-201ENST00000564593 ASB1Q9Y576 335 aa6.3□□□□□ -1.4
LINC00560-201ENST00000564593 PRAMEF22A3QJZ6 481 aa6.29□□□□□ -1.4
LINC00560-201ENST00000564593 IQCJ-SCHIP1C9J366 451 aaPredicted RBP6.29□□□□□ -1.4
LINC00560-201ENST00000564593 GOLGA6L22H0YM25 854 aa6.29□□□□□ -1.4
LINC00560-201ENST00000564593 ASGR2P07307 311 aa6.29□□□□□ -1.4
LINC00560-201ENST00000564593 NCAM1P13591 858 aa6.29□□□□□ -1.4
LINC00560-201ENST00000564593 AOAHP28039 575 aa6.29□□□□□ -1.4
LINC00560-201ENST00000564593 MCL1Q07820 350 aa6.29□□□□□ -1.4
LINC00560-201ENST00000564593 CR1LQ2VPA4 569 aa6.29□□□□□ -1.4
LINC00560-201ENST00000564593 LCE5AQ5TCM9 118 aa6.29□□□□□ -1.4
LINC00560-201ENST00000564593 PRAMEF18Q5VWM3 479 aa6.29□□□□□ -1.4
LINC00560-201ENST00000564593 FAM26EQ8N5C1 309 aa6.29□□□□□ -1.4
LINC00560-201ENST00000564593 C7orf31Q8N865 590 aa6.29□□□□□ -1.4
LINC00560-201ENST00000564593 E2F7Q96AV8 911 aa6.29□□□□□ -1.4
LINC00560-201ENST00000564593 CHMP4CQ96CF2 233 aa6.29□□□□□ -1.4
LINC00560-201ENST00000564593 HSPBP1Q9NZL4 362 aa6.29□□□□□ -1.4
LINC00560-201ENST00000564593 USP36Q9P275 1121 aaKnown RBP6.29□□□□□ -1.4
LINC00560-201ENST00000564593 CHPF2Q9P2E5 772 aa6.29□□□□□ -1.4
LINC00560-201ENST00000564593 KCNG1Q9UIX4 513 aa6.29□□□□□ -1.4
LINC00560-201ENST00000564593 UBA6A0AVT1 1052 aaPredicted RBP6.28□□□□□ -1.4
LINC00560-201ENST00000564593 SHTN1A0MZ66 631 aa6.28□□□□□ -1.4
LINC00560-201ENST00000564593 MT-CO1P00395 513 aa6.28□□□□□ -1.4
LINC00560-201ENST00000564593 CCND1P24385 295 aa6.28□□□□□ -1.4
LINC00560-201ENST00000564593 PDCD1Q15116 288 aa6.28□□□□□ -1.4
LINC00560-201ENST00000564593 INAVAQ3KP66 663 aa6.28□□□□□ -1.4
LINC00560-201ENST00000564593 PGM2L1Q6PCE3 622 aa6.28□□□□□ -1.4
LINC00560-201ENST00000564593 RTN4RL1Q86UN2 441 aaPredicted RBP6.28□□□□□ -1.4
LINC00560-201ENST00000564593 CILP2Q8IUL8 1156 aa6.28□□□□□ -1.4
LINC00560-201ENST00000564593 PHYKPLQ8IUZ5 450 aa6.28□□□□□ -1.4
LINC00560-201ENST00000564593 FMNL3Q8IVF7 1028 aa6.28□□□□□ -1.4
LINC00560-201ENST00000564593 FUBP3Q96I24 572 aaKnown RBP eCLIP6.28□□□□□ -1.4
LINC00560-201ENST00000564593 TUBGCP5Q96RT8 1024 aa6.28□□□□□ -1.4
LINC00560-201ENST00000564593 DIRC2Q96SL1 478 aa6.28□□□□□ -1.4
LINC00560-201ENST00000564593 SLC39A2Q9NP94 309 aa6.28□□□□□ -1.4
LINC00560-201ENST00000564593 UCKL1Q9NWZ5 548 aa6.28□□□□□ -1.4
LINC00560-201ENST00000564593 BTBD7Q9P203 1132 aa6.28□□□□□ -1.4
LINC00560-201ENST00000564593 RBPJLQ9UBG7 517 aa6.28□□□□□ -1.4
LINC00560-201ENST00000564593 CFBP00751 764 aa6.27□□□□□ -1.41
LINC00560-201ENST00000564593 ENO2P09104 434 aaPredicted RBP6.27□□□□□ -1.41
LINC00560-201ENST00000564593 MC4RP32245 332 aa6.27□□□□□ -1.41
LINC00560-201ENST00000564593 RAB27AP51159 221 aa6.27□□□□□ -1.41
LINC00560-201ENST00000564593 CACNB2Q08289 660 aaPredicted RBP6.27□□□□□ -1.41
LINC00560-201ENST00000564593 TTC38Q5R3I4 469 aa6.27□□□□□ -1.41
LINC00560-201ENST00000564593 TMEM132EQ6IEE7 984 aa6.27□□□□□ -1.41
LINC00560-201ENST00000564593 TIGD7Q6NT04 549 aaPredicted RBP6.27□□□□□ -1.41
LINC00560-201ENST00000564593 LMBR1Q8WVP7 490 aa6.27□□□□□ -1.41
LINC00560-201ENST00000564593 CPA5Q8WXQ8 436 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms