RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-223ENST00000494123 ATN1P54259 1190 aaPredicted RBP16.3■□□□□ 0.2
BRCA1-223ENST00000494123 CSPP1Q1MSJ5 1256 aa16.3■□□□□ 0.2
BRCA1-223ENST00000494123 CABP7Q86V35 215 aa16.3■□□□□ 0.2
BRCA1-223ENST00000494123 CATSPER3Q86XQ3 398 aa16.3■□□□□ 0.2
BRCA1-223ENST00000494123 ATP8B4Q8TF62 1192 aa16.3■□□□□ 0.2
BRCA1-223ENST00000494123 PPP1R13LQ8WUF5 828 aa16.3■□□□□ 0.2
BRCA1-223ENST00000494123 BBXQ8WY36 941 aaPredicted RBP16.3■□□□□ 0.2
BRCA1-223ENST00000494123 CALML4Q96GE6 196 aa16.3■□□□□ 0.2
BRCA1-223ENST00000494123 RNPEPQ9H4A4 650 aa16.3■□□□□ 0.2
BRCA1-223ENST00000494123 NRBP2Q9NSY0 501 aa16.3■□□□□ 0.2
BRCA1-223ENST00000494123 SEPT9Q9UHD8 586 aaPredicted RBP16.3■□□□□ 0.2
BRCA1-223ENST00000494123 ZNF862O60290 1169 aa16.3■□□□□ 0.2
BRCA1-223ENST00000494123 SMIM10L2AP0DMW4 78 aa16.3■□□□□ 0.2
BRCA1-223ENST00000494123 SMIM10L2BP0DMW5 78 aa16.3■□□□□ 0.2
BRCA1-223ENST00000494123 PPFIA1Q13136 1202 aa16.3■□□□□ 0.2
BRCA1-223ENST00000494123 XKR3Q5GH77 459 aa16.3■□□□□ 0.2
BRCA1-223ENST00000494123 NFRKBQ6P4R8 1299 aa16.3■□□□□ 0.2
BRCA1-223ENST00000494123 C4orf19Q8IY42 314 aa16.3■□□□□ 0.2
BRCA1-223ENST00000494123 ZNF579Q8NAF0 562 aaKnown RBP16.3■□□□□ 0.2
BRCA1-223ENST00000494123 SYMPKQ92797 1274 aaKnown RBP16.3■□□□□ 0.2
BRCA1-223ENST00000494123 CCDC43Q96MW1 224 aaKnown RBP16.3■□□□□ 0.2
BRCA1-223ENST00000494123 SEZ6LQ9BYH1 1024 aa16.3■□□□□ 0.2
BRCA1-223ENST00000494123 DDX11L8A8MPP1 907 aa16.29■□□□□ 0.2
BRCA1-223ENST00000494123 ARVCFO00192 962 aa16.29■□□□□ 0.2
BRCA1-223ENST00000494123 HBP1O60381 514 aa16.29■□□□□ 0.2
BRCA1-223ENST00000494123 SPATA31C1P0DKV0 1188 aa16.29■□□□□ 0.2
BRCA1-223ENST00000494123 ATP4AP20648 1035 aa16.29■□□□□ 0.2
BRCA1-223ENST00000494123 MUTP22033 750 aa16.29■□□□□ 0.2
BRCA1-223ENST00000494123 TPRNQ4KMQ1 711 aa16.29■□□□□ 0.2
BRCA1-223ENST00000494123 POTEGQ6S5H5 508 aa16.29■□□□□ 0.2
BRCA1-223ENST00000494123 SLC39A5Q6ZMH5 540 aa16.29■□□□□ 0.2
BRCA1-223ENST00000494123 OTUD6AQ7L8S5 288 aa16.29■□□□□ 0.2
BRCA1-223ENST00000494123 EPSTI1Q96J88 318 aa16.29■□□□□ 0.2
BRCA1-223ENST00000494123 NT5C3AQ9H0P0 336 aa16.29■□□□□ 0.2
BRCA1-223ENST00000494123 WRAP73Q9P2S5 460 aaPredicted RBP16.29■□□□□ 0.2
BRCA1-223ENST00000494123 HDAC6Q9UBN7 1215 aa16.29■□□□□ 0.2
BRCA1-223ENST00000494123 CCDC39Q9UFE4 941 aa16.29■□□□□ 0.2
BRCA1-223ENST00000494123 KIAA1024Q9UPX6 916 aa16.29■□□□□ 0.2
BRCA1-223ENST00000494123 KAT6AQ92794 2004 aa16.29■□□□□ 0.2
BRCA1-223ENST00000494123 C17orf102A2RUQ5 167 aa16.28■□□□□ 0.2
BRCA1-223ENST00000494123 GOLGA6L4A6NEF3 574 aa16.28■□□□□ 0.2
BRCA1-223ENST00000494123 SLC26A4O43511 780 aa16.28■□□□□ 0.2
BRCA1-223ENST00000494123 GNAT1P11488 350 aa16.28■□□□□ 0.2
BRCA1-223ENST00000494123 INSRRP14616 1297 aa16.28■□□□□ 0.2
BRCA1-223ENST00000494123 YWHABP31946 246 aaKnown RBP16.28■□□□□ 0.2
BRCA1-223ENST00000494123 IGBP1P78318 339 aa16.28■□□□□ 0.2
BRCA1-223ENST00000494123 PTPN11Q06124 597 aaPredicted RBP16.28■□□□□ 0.2
BRCA1-223ENST00000494123 AXDND1Q5T1B0 1012 aaPredicted RBP16.28■□□□□ 0.2
BRCA1-223ENST00000494123 NACC1Q96RE7 527 aa16.28■□□□□ 0.2
BRCA1-223ENST00000494123 MMTAG2Q9BU76 263 aaKnown RBP16.28■□□□□ 0.2
BRCA1-223ENST00000494123 DDX19AQ9NUU7 478 aaKnown RBP16.28■□□□□ 0.2
BRCA1-223ENST00000494123 FAM13BQ9NYF5 915 aa16.28■□□□□ 0.2
BRCA1-223ENST00000494123 GRIN2DO15399 1336 aa16.28■□□□□ 0.2
BRCA1-223ENST00000494123 MROH7Q68CQ1 1323 aa16.28■□□□□ 0.2
BRCA1-223ENST00000494123 NRCAMQ92823 1304 aa16.28■□□□□ 0.2
BRCA1-223ENST00000494123 LYPLA2O95372 231 aa16.27■□□□□ 0.2
BRCA1-223ENST00000494123 GRIK4Q16099 956 aa16.27■□□□□ 0.2
BRCA1-223ENST00000494123 ZNF484Q5JVG2 852 aa16.27■□□□□ 0.2
BRCA1-223ENST00000494123 ADALQ6DHV7 355 aa16.27■□□□□ 0.2
BRCA1-223ENST00000494123 USP49Q70CQ1 688 aa16.27■□□□□ 0.2
BRCA1-223ENST00000494123 UBE2Q1Q7Z7E8 422 aa16.27■□□□□ 0.2
BRCA1-223ENST00000494123 GBP4Q96PP9 640 aa16.27■□□□□ 0.2
BRCA1-223ENST00000494123 PLIN2Q99541 437 aa16.27■□□□□ 0.2
BRCA1-223ENST00000494123 CCSER1Q9C0I3 900 aa16.27■□□□□ 0.2
BRCA1-223ENST00000494123 SETD4Q9NVD3 440 aa16.27■□□□□ 0.2
BRCA1-223ENST00000494123 GTF2IRD1Q9UHL9 959 aa16.27■□□□□ 0.2
BRCA1-223ENST00000494123 NOD1Q9Y239 953 aa16.27■□□□□ 0.2
BRCA1-223ENST00000494123 COL1A2P08123 1366 aa16.27■□□□□ 0.19
BRCA1-223ENST00000494123 RRN3P2A6NIE6 340 aa16.27■□□□□ 0.19
BRCA1-223ENST00000494123 KARSQ15046 597 aaKnown RBP16.27■□□□□ 0.19
BRCA1-223ENST00000494123 ECM1Q16610 540 aa16.27■□□□□ 0.19
BRCA1-223ENST00000494123 MTERF2Q49AM1 385 aa16.27■□□□□ 0.19
BRCA1-223ENST00000494123 XKR9Q5GH70 373 aa16.27■□□□□ 0.19
BRCA1-223ENST00000494123 PLA2G4FQ68DD2 849 aa16.27■□□□□ 0.19
BRCA1-223ENST00000494123 SHC4Q6S5L8 630 aa16.27■□□□□ 0.19
BRCA1-223ENST00000494123 ANO5Q75V66 913 aa16.27■□□□□ 0.19
BRCA1-223ENST00000494123 SESTD1Q86VW0 696 aa16.27■□□□□ 0.19
BRCA1-223ENST00000494123 SLC43A3Q8NBI5 491 aa16.27■□□□□ 0.19
BRCA1-223ENST00000494123 PIGOQ8TEQ8 1089 aa16.27■□□□□ 0.19
BRCA1-223ENST00000494123 LMBR1Q8WVP7 490 aa16.27■□□□□ 0.19
BRCA1-223ENST00000494123 DNM3Q9UQ16 869 aa16.27■□□□□ 0.19
BRCA1-223ENST00000494123 ATP11BQ9Y2G3 1177 aa16.27■□□□□ 0.19
BRCA1-223ENST00000494123 TMEM150BA6NC51 233 aa16.26■□□□□ 0.19
BRCA1-223ENST00000494123 TLR3O15455 904 aaKnown RBP16.26■□□□□ 0.19
BRCA1-223ENST00000494123 PQBP1O60828 265 aaKnown RBP16.26■□□□□ 0.19
BRCA1-223ENST00000494123 GRB10Q13322 594 aa16.26■□□□□ 0.19
BRCA1-223ENST00000494123 PTGISQ16647 500 aa16.26■□□□□ 0.19
BRCA1-223ENST00000494123 HYIQ5T013 277 aa16.26■□□□□ 0.19
BRCA1-223ENST00000494123 RESP18Q5W5W9 173 aa16.26■□□□□ 0.19
BRCA1-223ENST00000494123 KCTD17Q8N5Z5 321 aa16.26■□□□□ 0.19
BRCA1-223ENST00000494123 TRAPPC12Q8WVT3 735 aa16.26■□□□□ 0.19
BRCA1-223ENST00000494123 CEP170P1Q96L14 293 aa16.26■□□□□ 0.19
BRCA1-223ENST00000494123 PNMA5Q96PV4 448 aa16.26■□□□□ 0.19
BRCA1-223ENST00000494123 NIFKQ9BYG3 293 aaKnown RBP16.26■□□□□ 0.19
BRCA1-223ENST00000494123 ANKEF1Q9NU02 776 aa16.26■□□□□ 0.19
BRCA1-223ENST00000494123 LOXHD1Q8IVV2 1947 aa16.26■□□□□ 0.19
BRCA1-223ENST00000494123 A0A087WWV3 80 aa16.25■□□□□ 0.19
BRCA1-223ENST00000494123 ZBTB39O15060 712 aa16.25■□□□□ 0.19
BRCA1-223ENST00000494123 STBD1O95210 358 aa16.25■□□□□ 0.19
BRCA1-223ENST00000494123 XRCC6P12956 609 aaKnown RBP eCLIP16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms