RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 WASHC5Q12768 1159 aa9.99□□□□□ -0.81
LIMCH1-202ENST00000381753 FSCN1Q16658 493 aaKnown RBP9.99□□□□□ -0.81
LIMCH1-202ENST00000381753 TMCO5AQ8N6Q1 288 aa9.99□□□□□ -0.81
LIMCH1-202ENST00000381753 BANK1Q8NDB2 785 aa9.99□□□□□ -0.81
LIMCH1-202ENST00000381753 IPO5O00410 1097 aaKnown RBP9.99□□□□□ -0.81
LIMCH1-202ENST00000381753 GNRH1P01148 92 aa9.99□□□□□ -0.81
LIMCH1-202ENST00000381753 ADORA2AP29274 412 aa9.99□□□□□ -0.81
LIMCH1-202ENST00000381753 CTTNQ14247 550 aaKnown RBP9.99□□□□□ -0.81
LIMCH1-202ENST00000381753 BEND3Q5T5X7 828 aa9.99□□□□□ -0.81
LIMCH1-202ENST00000381753 RINT1Q6NUQ1 792 aa9.99□□□□□ -0.81
LIMCH1-202ENST00000381753 TMED8Q6PL24 325 aaPredicted RBP9.99□□□□□ -0.81
LIMCH1-202ENST00000381753 RUFY3Q7L099 469 aa9.99□□□□□ -0.81
LIMCH1-202ENST00000381753 OTOP2Q7RTS6 562 aa9.99□□□□□ -0.81
LIMCH1-202ENST00000381753 TLK2Q86UE8 772 aa9.99□□□□□ -0.81
LIMCH1-202ENST00000381753 APBA2Q99767 749 aa9.99□□□□□ -0.81
LIMCH1-202ENST00000381753 PAIP2Q9BPZ3 127 aaKnown RBP9.99□□□□□ -0.81
LIMCH1-202ENST00000381753 HIPK3Q9H422 1215 aa9.99□□□□□ -0.81
LIMCH1-202ENST00000381753 POLRMTO00411 1230 aaKnown RBP9.99□□□□□ -0.81
LIMCH1-202ENST00000381753 ZBTB5O15062 677 aa9.99□□□□□ -0.81
LIMCH1-202ENST00000381753 ATAT1Q5SQI0 421 aa9.99□□□□□ -0.81
LIMCH1-202ENST00000381753 MFSD4BQ5TF39 518 aa9.99□□□□□ -0.81
LIMCH1-202ENST00000381753 WDR48Q8TAF3 677 aa9.99□□□□□ -0.81
LIMCH1-202ENST00000381753 TRIM62Q9BVG3 475 aa9.99□□□□□ -0.81
LIMCH1-202ENST00000381753 MRPL4Q9BYD3 311 aaKnown RBP9.99□□□□□ -0.81
LIMCH1-202ENST00000381753 WEE1P30291 646 aa9.98□□□□□ -0.81
LIMCH1-202ENST00000381753 KIF5AQ12840 1032 aa9.98□□□□□ -0.81
LIMCH1-202ENST00000381753 RABGGTAQ92696 567 aa9.98□□□□□ -0.81
LIMCH1-202ENST00000381753 CCDC42Q96M95 316 aa9.98□□□□□ -0.81
LIMCH1-202ENST00000381753 TMEM206Q9H813 350 aa9.98□□□□□ -0.81
LIMCH1-202ENST00000381753 MAPK8IP1Q9UQF2 711 aa9.98□□□□□ -0.81
LIMCH1-202ENST00000381753 NCAPD2Q15021 1401 aa9.98□□□□□ -0.81
LIMCH1-202ENST00000381753 SOX5P35711 763 aa9.98□□□□□ -0.81
LIMCH1-202ENST00000381753 MAP2K2P36507 400 aa9.98□□□□□ -0.81
LIMCH1-202ENST00000381753 PHKG1Q16816 387 aa9.98□□□□□ -0.81
LIMCH1-202ENST00000381753 MAP7D3Q8IWC1 876 aa9.98□□□□□ -0.81
LIMCH1-202ENST00000381753 RNF149Q8NC42 400 aa9.98□□□□□ -0.81
LIMCH1-202ENST00000381753 PCIF1Q9H4Z3 704 aa9.98□□□□□ -0.81
LIMCH1-202ENST00000381753 VCPKMTQ9H867 229 aa9.98□□□□□ -0.81
LIMCH1-202ENST00000381753 RWDD3Q9Y3V2 267 aa9.98□□□□□ -0.81
LIMCH1-202ENST00000381753 PNPLA7Q6ZV29 1317 aa9.98□□□□□ -0.81
LIMCH1-202ENST00000381753 CDHR2Q9BYE9 1310 aa9.98□□□□□ -0.81
LIMCH1-202ENST00000381753 FAM170AA1A519 330 aa9.98□□□□□ -0.81
LIMCH1-202ENST00000381753 XRCC5P13010 732 aaKnown RBP9.98□□□□□ -0.81
LIMCH1-202ENST00000381753 GAP43P17677 238 aa9.98□□□□□ -0.81
LIMCH1-202ENST00000381753 PEX3P56589 373 aa9.98□□□□□ -0.81
LIMCH1-202ENST00000381753 CKAP4Q07065 602 aaKnown RBP9.98□□□□□ -0.81
LIMCH1-202ENST00000381753 AP3B2Q13367 1082 aa9.98□□□□□ -0.81
LIMCH1-202ENST00000381753 UBXN2BQ14CS0 331 aa9.98□□□□□ -0.81
LIMCH1-202ENST00000381753 TMTC4Q5T4D3 741 aa9.98□□□□□ -0.81
LIMCH1-202ENST00000381753 ZNF784Q8NCA9 323 aaPredicted RBP9.98□□□□□ -0.81
LIMCH1-202ENST00000381753 PRMT6Q96LA8 375 aaPredicted RBP9.98□□□□□ -0.81
LIMCH1-202ENST00000381753 SLITRK1Q96PX8 696 aa9.98□□□□□ -0.81
LIMCH1-202ENST00000381753 CLDND1Q9NY35 253 aa9.98□□□□□ -0.81
LIMCH1-202ENST00000381753 FER1L4A9Z1Z3 1794 aa9.98□□□□□ -0.81
LIMCH1-202ENST00000381753 F13A1P00488 732 aa9.98□□□□□ -0.81
LIMCH1-202ENST00000381753 MYL1P05976 194 aa9.98□□□□□ -0.81
LIMCH1-202ENST00000381753 EHBP1Q8NDI1 1231 aa9.98□□□□□ -0.81
LIMCH1-202ENST00000381753 DCCP43146 1447 aa9.98□□□□□ -0.81
LIMCH1-202ENST00000381753 MYMKA6NI61 221 aa9.98□□□□□ -0.81
LIMCH1-202ENST00000381753 AGRPO00253 132 aa9.98□□□□□ -0.81
LIMCH1-202ENST00000381753 CYP2D6P10635 497 aa9.98□□□□□ -0.81
LIMCH1-202ENST00000381753 DRP2Q13474 957 aa9.98□□□□□ -0.81
LIMCH1-202ENST00000381753 PSRC1Q6PGN9 363 aaPredicted RBP9.98□□□□□ -0.81
LIMCH1-202ENST00000381753 FBXO16Q8IX29 292 aaPredicted RBP9.98□□□□□ -0.81
LIMCH1-202ENST00000381753 ZNF513Q8N8E2 541 aaPredicted RBP9.98□□□□□ -0.81
LIMCH1-202ENST00000381753 ZNF558Q96NG5 402 aa9.98□□□□□ -0.81
LIMCH1-202ENST00000381753 POLR3FQ9H1D9 316 aaPredicted RBP9.98□□□□□ -0.81
LIMCH1-202ENST00000381753 TMX1Q9H3N1 280 aa9.98□□□□□ -0.81
LIMCH1-202ENST00000381753 TMEM260Q9NX78 707 aa9.98□□□□□ -0.81
LIMCH1-202ENST00000381753 E7EWF7 191 aa9.97□□□□□ -0.81
LIMCH1-202ENST00000381753 MBL2P11226 248 aaPredicted RBP9.97□□□□□ -0.81
LIMCH1-202ENST00000381753 PTK2Q05397 1052 aa9.97□□□□□ -0.81
LIMCH1-202ENST00000381753 TBC1D19Q8N5T2 526 aa9.97□□□□□ -0.81
LIMCH1-202ENST00000381753 CSGALNACT2Q8N6G5 542 aa9.97□□□□□ -0.81
LIMCH1-202ENST00000381753 GJA10Q969M2 543 aa9.97□□□□□ -0.81
LIMCH1-202ENST00000381753 NT5C1BQ96P26 610 aa9.97□□□□□ -0.81
LIMCH1-202ENST00000381753 GPR108Q9NPR9 543 aa9.97□□□□□ -0.81
LIMCH1-202ENST00000381753 RAB20Q9NX57 234 aa9.97□□□□□ -0.81
LIMCH1-202ENST00000381753 GPR25O00155 361 aa9.97□□□□□ -0.81
LIMCH1-202ENST00000381753 SNAP23O00161 211 aa9.97□□□□□ -0.81
LIMCH1-202ENST00000381753 SLC27A2O14975 620 aa9.97□□□□□ -0.81
LIMCH1-202ENST00000381753 INHAP05111 366 aa9.97□□□□□ -0.81
LIMCH1-202ENST00000381753 RSAD2Q8WXG1 361 aa9.97□□□□□ -0.81
LIMCH1-202ENST00000381753 MRPL17Q9NRX2 175 aaKnown RBP9.97□□□□□ -0.81
LIMCH1-202ENST00000381753 DNMT1P26358 1616 aaKnown RBP9.97□□□□□ -0.81
LIMCH1-202ENST00000381753 ABCB4P21439 1286 aa9.97□□□□□ -0.81
LIMCH1-202ENST00000381753 TDRD10Q5VZ19 366 aaKnown RBP9.97□□□□□ -0.81
LIMCH1-202ENST00000381753 TTC14Q96N46 770 aa9.97□□□□□ -0.81
LIMCH1-202ENST00000381753 CREBZFQ9NS37 354 aa9.97□□□□□ -0.81
LIMCH1-202ENST00000381753 KLF15Q9UIH9 416 aa9.97□□□□□ -0.81
LIMCH1-202ENST00000381753 TNNQ9UQP3 1299 aa9.97□□□□□ -0.81
LIMCH1-202ENST00000381753 CD163L1Q9NR16 1453 aa9.97□□□□□ -0.81
LIMCH1-202ENST00000381753 BRD1O95696 1058 aa9.97□□□□□ -0.81
LIMCH1-202ENST00000381753 IQCB1Q15051 598 aa9.97□□□□□ -0.81
LIMCH1-202ENST00000381753 ZNF365Q70YC5 407 aa9.97□□□□□ -0.81
LIMCH1-202ENST00000381753 IFT43Q96FT9 208 aa9.97□□□□□ -0.81
LIMCH1-202ENST00000381753 KIF2CQ99661 725 aa9.97□□□□□ -0.81
LIMCH1-202ENST00000381753 MUC3BQ9H195 1237 aa9.97□□□□□ -0.81
LIMCH1-202ENST00000381753 ARHGEF5Q12774 1597 aa9.96□□□□□ -0.81
LIMCH1-202ENST00000381753 A8MXQ7 604 aa9.96□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms