RNA–Protein interactions for RNA: ENST00000596163.5

SHKBP1-212, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-212ENST00000596163 ZNF302Q9NR11 478 aa19.53■□□□□ 0.72
SHKBP1-212ENST00000596163 SETD4Q9NVD3 440 aa19.53■□□□□ 0.72
SHKBP1-212ENST00000596163 SMC3Q9UQE7 1217 aa19.53■□□□□ 0.72
SHKBP1-212ENST00000596163 DNAH12Q6ZR08 3092 aa19.52■□□□□ 0.72
SHKBP1-212ENST00000596163 CSF2RAP15509 400 aa19.52■□□□□ 0.72
SHKBP1-212ENST00000596163 MARK3P27448 753 aa19.52■□□□□ 0.72
SHKBP1-212ENST00000596163 HOXC8P31273 242 aa19.52■□□□□ 0.72
SHKBP1-212ENST00000596163 SWSAP1Q6NVH7 229 aa19.52■□□□□ 0.72
SHKBP1-212ENST00000596163 RDM1Q8NG50 284 aa19.52■□□□□ 0.72
SHKBP1-212ENST00000596163 IL23AQ9NPF7 189 aa19.52■□□□□ 0.72
SHKBP1-212ENST00000596163 DISC1Q9NRI5 854 aa19.52■□□□□ 0.72
SHKBP1-212ENST00000596163 TRPC6Q9Y210 931 aa19.52■□□□□ 0.72
SHKBP1-212ENST00000596163 PSMD10O75832 226 aa19.51■□□□□ 0.71
SHKBP1-212ENST00000596163 PFKMP08237 780 aa19.51■□□□□ 0.71
SHKBP1-212ENST00000596163 SELPP16109 830 aa19.51■□□□□ 0.71
SHKBP1-212ENST00000596163 ZNF200P98182 395 aaPredicted RBP19.51■□□□□ 0.71
SHKBP1-212ENST00000596163 RBL2Q08999 1139 aa19.51■□□□□ 0.71
SHKBP1-212ENST00000596163 EARS2Q5JPH6 523 aaKnown RBP19.51■□□□□ 0.71
SHKBP1-212ENST00000596163 PDXDC2PQ6P474 469 aa19.51■□□□□ 0.71
SHKBP1-212ENST00000596163 PSRC1Q6PGN9 363 aaPredicted RBP19.51■□□□□ 0.71
SHKBP1-212ENST00000596163 SERINC5Q86VE9 423 aa19.51■□□□□ 0.71
SHKBP1-212ENST00000596163 SLFN12Q8IYM2 578 aa19.51■□□□□ 0.71
SHKBP1-212ENST00000596163 ETNPPLQ8TBG4 499 aa19.51■□□□□ 0.71
SHKBP1-212ENST00000596163 UMODL1Q5DID0 1318 aa19.51■□□□□ 0.71
SHKBP1-212ENST00000596163 POTEB3A0JP26 581 aa19.5■□□□□ 0.71
SHKBP1-212ENST00000596163 TREHO43280 583 aa19.5■□□□□ 0.71
SHKBP1-212ENST00000596163 SLC37A4O43826 429 aa19.5■□□□□ 0.71
SHKBP1-212ENST00000596163 HBP1O60381 514 aa19.5■□□□□ 0.71
SHKBP1-212ENST00000596163 CAND2O75155 1236 aa19.5■□□□□ 0.71
SHKBP1-212ENST00000596163 RPLP2P05387 115 aaKnown RBP19.5■□□□□ 0.71
SHKBP1-212ENST00000596163 IQCF3P0C7M6 154 aa19.5■□□□□ 0.71
SHKBP1-212ENST00000596163 GJB2P29033 226 aa19.5■□□□□ 0.71
SHKBP1-212ENST00000596163 PLCB4Q15147 1175 aa19.5■□□□□ 0.71
SHKBP1-212ENST00000596163 GRIK4Q16099 956 aa19.5■□□□□ 0.71
SHKBP1-212ENST00000596163 POTEBQ6S5H4 581 aa19.5■□□□□ 0.71
SHKBP1-212ENST00000596163 MIER3Q7Z3K6 550 aa19.5■□□□□ 0.71
SHKBP1-212ENST00000596163 CKAP2LQ8IYA6 745 aa19.5■□□□□ 0.71
SHKBP1-212ENST00000596163 LMBR1Q8WVP7 490 aa19.5■□□□□ 0.71
SHKBP1-212ENST00000596163 CTAGE1Q96RT6 745 aa19.5■□□□□ 0.71
SHKBP1-212ENST00000596163 WNT8AQ9H1J5 351 aa19.5■□□□□ 0.71
SHKBP1-212ENST00000596163 KCNMB3Q9NPA1 279 aa19.5■□□□□ 0.71
SHKBP1-212ENST00000596163 PCDH10Q9P2E7 1040 aa19.5■□□□□ 0.71
SHKBP1-212ENST00000596163 MAFBQ9Y5Q3 323 aaPredicted RBP19.5■□□□□ 0.71
SHKBP1-212ENST00000596163 FAM205CA6NFA0 338 aa19.49■□□□□ 0.71
SHKBP1-212ENST00000596163 H3BQV1 296 aa19.49■□□□□ 0.71
SHKBP1-212ENST00000596163 CHMP2AO43633 222 aa19.49■□□□□ 0.71
SHKBP1-212ENST00000596163 FGBP02675 491 aa19.49■□□□□ 0.71
SHKBP1-212ENST00000596163 INSRRP14616 1297 aa19.49■□□□□ 0.71
SHKBP1-212ENST00000596163 SHHQ15465 462 aa19.49■□□□□ 0.71
SHKBP1-212ENST00000596163 TAF2Q6P1X5 1199 aa19.49■□□□□ 0.71
SHKBP1-212ENST00000596163 RSPH3Q86UC2 560 aa19.49■□□□□ 0.71
SHKBP1-212ENST00000596163 CCDC60Q8IWA6 550 aaPredicted RBP19.49■□□□□ 0.71
SHKBP1-212ENST00000596163 ATP8B4Q8TF62 1192 aa19.49■□□□□ 0.71
SHKBP1-212ENST00000596163 SCLYQ96I15 445 aa19.49■□□□□ 0.71
SHKBP1-212ENST00000596163 FAM167AQ96KS9 214 aa19.49■□□□□ 0.71
SHKBP1-212ENST00000596163 MTIF3Q9H2K0 278 aaKnown RBP19.49■□□□□ 0.71
SHKBP1-212ENST00000596163 UNC45AQ9H3U1 944 aa19.49■□□□□ 0.71
SHKBP1-212ENST00000596163 GABBR1Q9UBS5 961 aa19.49■□□□□ 0.71
SHKBP1-212ENST00000596163 NOL7Q9UMY1 257 aaKnown RBP19.49■□□□□ 0.71
SHKBP1-212ENST00000596163 CKBP12277 381 aa19.48■□□□□ 0.71
SHKBP1-212ENST00000596163 THPOP40225 353 aa19.48■□□□□ 0.71
SHKBP1-212ENST00000596163 TRAPPC10P48553 1259 aa19.48■□□□□ 0.71
SHKBP1-212ENST00000596163 EPHB4P54760 987 aa19.48■□□□□ 0.71
SHKBP1-212ENST00000596163 ADAM17P78536 824 aa19.48■□□□□ 0.71
SHKBP1-212ENST00000596163 ORC2Q13416 577 aaPredicted RBP19.48■□□□□ 0.71
SHKBP1-212ENST00000596163 CUL4AQ13619 759 aa19.48■□□□□ 0.71
SHKBP1-212ENST00000596163 HIC1Q14526 733 aa19.48■□□□□ 0.71
SHKBP1-212ENST00000596163 LRIT3Q3SXY7 679 aa19.48■□□□□ 0.71
SHKBP1-212ENST00000596163 ZNF484Q5JVG2 852 aa19.48■□□□□ 0.71
SHKBP1-212ENST00000596163 LRRC8DQ7L1W4 858 aa19.48■□□□□ 0.71
SHKBP1-212ENST00000596163 NOSTRINQ8IVI9 506 aa19.48■□□□□ 0.71
SHKBP1-212ENST00000596163 BBXQ8WY36 941 aaPredicted RBP19.48■□□□□ 0.71
SHKBP1-212ENST00000596163 DHX38Q92620 1227 aaKnown RBP19.48■□□□□ 0.71
SHKBP1-212ENST00000596163 NRBP2Q9NSY0 501 aa19.48■□□□□ 0.71
SHKBP1-212ENST00000596163 DKC1O60832 514 aaKnown RBP eCLIP19.47■□□□□ 0.71
SHKBP1-212ENST00000596163 ACRP10323 421 aa19.47■□□□□ 0.71
SHKBP1-212ENST00000596163 ACTN1P12814 892 aa19.47■□□□□ 0.71
SHKBP1-212ENST00000596163 U2AF2P26368 475 aaKnown RBP eCLIP19.47■□□□□ 0.71
SHKBP1-212ENST00000596163 IGBP1P78318 339 aa19.47■□□□□ 0.71
SHKBP1-212ENST00000596163 CALCRLQ16602 461 aa19.47■□□□□ 0.71
SHKBP1-212ENST00000596163 TRIM71Q2Q1W2 868 aaKnown RBP19.47■□□□□ 0.71
SHKBP1-212ENST00000596163 TMEM240Q5SV17 173 aa19.47■□□□□ 0.71
SHKBP1-212ENST00000596163 C9orf50Q5SZB4 431 aa19.47■□□□□ 0.71
SHKBP1-212ENST00000596163 ZNF365Q70YC5 407 aa19.47■□□□□ 0.71
SHKBP1-212ENST00000596163 POTEDQ86YR6 584 aa19.47■□□□□ 0.71
SHKBP1-212ENST00000596163 GJA10Q969M2 543 aa19.47■□□□□ 0.71
SHKBP1-212ENST00000596163 RNPC3Q96LT9 517 aaKnown RBP19.47■□□□□ 0.71
SHKBP1-212ENST00000596163 TUBE1Q9UJT0 475 aa19.47■□□□□ 0.71
SHKBP1-212ENST00000596163 CEP131Q9UPN4 1083 aa19.47■□□□□ 0.71
SHKBP1-212ENST00000596163 COL1A2P08123 1366 aa19.46■□□□□ 0.71
SHKBP1-212ENST00000596163 MBLAC1A4D2B0 266 aaPredicted RBP19.46■□□□□ 0.71
SHKBP1-212ENST00000596163 RSPH10B2B2RC85 870 aa19.46■□□□□ 0.71
SHKBP1-212ENST00000596163 NEMFO60524 1076 aa19.46■□□□□ 0.71
SHKBP1-212ENST00000596163 RSPH10BP0C881 870 aa19.46■□□□□ 0.71
SHKBP1-212ENST00000596163 ATP2B1P20020 1258 aa19.46■□□□□ 0.71
SHKBP1-212ENST00000596163 PPP2R5CQ13362 524 aa19.46■□□□□ 0.71
SHKBP1-212ENST00000596163 LARP1BQ659C4 914 aaKnown RBP19.46■□□□□ 0.71
SHKBP1-212ENST00000596163 MCTP1Q6DN14 999 aa19.46■□□□□ 0.71
SHKBP1-212ENST00000596163 B3GNT9Q6UX72 402 aa19.46■□□□□ 0.71
SHKBP1-212ENST00000596163 C16orf59Q7L2K0 433 aa19.46■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 166.4 ms