RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 PAK2Q13177 524 aa5.77□□□□□ -1.49
USP28-213ENST00000544967 ZNF268Q14587 947 aaPredicted RBP5.77□□□□□ -1.49
USP28-213ENST00000544967 FIGNQ5HY92 759 aa5.77□□□□□ -1.49
USP28-213ENST00000544967 CAPRIN2Q6IMN6 1127 aaKnown RBP5.77□□□□□ -1.49
USP28-213ENST00000544967 ZNF589Q86UQ0 364 aaPredicted RBP5.77□□□□□ -1.49
USP28-213ENST00000544967 SESTD1Q86VW0 696 aa5.77□□□□□ -1.49
USP28-213ENST00000544967 KIAA0825Q8IV33 1275 aa5.77□□□□□ -1.49
USP28-213ENST00000544967 KLHL23Q8NBE8 558 aa5.77□□□□□ -1.49
USP28-213ENST00000544967 SMCR8Q8TEV9 937 aaPredicted RBP5.77□□□□□ -1.49
USP28-213ENST00000544967 OSBP2Q969R2 916 aa5.77□□□□□ -1.49
USP28-213ENST00000544967 CYFIP2Q96F07 1278 aa5.77□□□□□ -1.49
USP28-213ENST00000544967 CALR3Q96L12 384 aaKnown RBP5.77□□□□□ -1.49
USP28-213ENST00000544967 CEP63Q96MT8 703 aa5.77□□□□□ -1.49
USP28-213ENST00000544967 GSDMAQ96QA5 445 aa5.77□□□□□ -1.49
USP28-213ENST00000544967 NUP58Q9BVL2 599 aa5.77□□□□□ -1.49
USP28-213ENST00000544967 PLEKHA4Q9H4M7 779 aa5.77□□□□□ -1.49
USP28-213ENST00000544967 CNOT10Q9H9A5 744 aaKnown RBP5.77□□□□□ -1.49
USP28-213ENST00000544967 EPB41L4AQ9HCS5 686 aaPredicted RBP5.77□□□□□ -1.49
USP28-213ENST00000544967 NOP53Q9NZM5 478 aaKnown RBP5.77□□□□□ -1.49
USP28-213ENST00000544967 COL4A3BPQ9Y5P4 624 aa5.77□□□□□ -1.49
USP28-213ENST00000544967 SCINQ9Y6U3 715 aa5.77□□□□□ -1.49
USP28-213ENST00000544967 GSG1L2A8MUP6 293 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 BHMG1C9JSJ3 638 aaPredicted RBP5.76□□□□□ -1.49
USP28-213ENST00000544967 M0R2C6 588 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 TRAPPC3O43617 180 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 PRC1O43663 620 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 BAG3O95817 575 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 C7P10643 843 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 CYLC1P35663 651 aaPredicted RBP5.76□□□□□ -1.49
USP28-213ENST00000544967 ERVK-24P63145 666 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 CEBPZQ03701 1054 aaKnown RBP5.76□□□□□ -1.49
USP28-213ENST00000544967 PDE4BQ07343 736 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 ITGB3BPQ13352 177 aaPredicted RBP5.76□□□□□ -1.49
USP28-213ENST00000544967 MTF1Q14872 753 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 DIXDC1Q155Q3 683 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 SPECC1Q5M775 1068 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 ANGEL2Q5VTE6 544 aaKnown RBP5.76□□□□□ -1.49
USP28-213ENST00000544967 MTHFD1LQ6UB35 978 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 C16orf86Q6ZW13 317 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 BZW1Q7L1Q6 419 aaKnown RBP5.76□□□□□ -1.49
USP28-213ENST00000544967 SH3RF1Q7Z6J0 888 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 IFT20Q8IY31 132 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 SH3RF3Q8TEJ3 882 aaPredicted RBP5.76□□□□□ -1.49
USP28-213ENST00000544967 MMS19Q96T76 1030 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 ZSWIM4Q9H7M6 989 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 PLCB1Q9NQ66 1216 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 STIM2Q9P246 746 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 ARPP21Q9UBL0 812 aaPredicted RBP5.76□□□□□ -1.49
USP28-213ENST00000544967 SLC12A4Q9UP95 1085 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 ATP8B3O60423 1300 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 SYNRGQ9UMZ2 1314 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 GMNCA6NCL1 334 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 ORC4O43929 436 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 FLOT1O75955 427 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 BMP15O95972 392 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 SLC10A3P09131 477 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 ZBTB48P10074 688 aaPredicted RBP5.76□□□□□ -1.49
USP28-213ENST00000544967 PTPREP23469 700 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 CCND1P24385 295 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 HSPA9P38646 679 aaKnown RBP5.76□□□□□ -1.49
USP28-213ENST00000544967 SCTRP47872 440 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 RCAN1P53805 252 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 PNOCQ13519 176 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 SH3D19Q5HYK7 790 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 PCGF5Q86SE9 256 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 SAPCD2Q86UD0 394 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 FOXP4Q8IVH2 680 aaPredicted RBP5.76□□□□□ -1.49
USP28-213ENST00000544967 SH3TC2Q8TF17 1288 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 CCT6BQ92526 530 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 ANKS1AQ92625 1134 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 GLMNQ92990 594 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 JAKMIP2Q96AA8 810 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 KLRG1Q96E93 195 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 MMTAG2Q9BU76 263 aaKnown RBP5.76□□□□□ -1.49
USP28-213ENST00000544967 IRX2Q9BZI1 471 aaPredicted RBP5.76□□□□□ -1.49
USP28-213ENST00000544967 DEFB129Q9H1M3 183 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 DCP1AQ9NPI6 582 aaPredicted RBP5.76□□□□□ -1.49
USP28-213ENST00000544967 TCP11L1Q9NUJ3 509 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 SNX12Q9UMY4 172 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 CEP131Q9UPN4 1083 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 A0A1W2PQJ5 194 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 TMEM88BA6NKF7 163 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 PRPF3O43395 683 aaKnown RBP5.76□□□□□ -1.49
USP28-213ENST00000544967 PPFIA2O75334 1257 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 USP2O75604 605 aaPredicted RBP5.76□□□□□ -1.49
USP28-213ENST00000544967 LCA5LO95447 670 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 HSPA6P17066 643 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 CD53P19397 219 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 TNNI2P48788 182 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 CCT2P78371 535 aaKnown RBP5.76□□□□□ -1.49
USP28-213ENST00000544967 ELF3P78545 371 aaPredicted RBP5.76□□□□□ -1.49
USP28-213ENST00000544967 FMR1Q06787 632 aaKnown RBP eCLIP5.76□□□□□ -1.49
USP28-213ENST00000544967 IMMTQ16891 758 aaKnown RBP5.76□□□□□ -1.49
USP28-213ENST00000544967 C12orf60Q5U649 245 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 NCAPH2Q6IBW4 605 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 RUFY4Q6ZNE9 571 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 STOX1Q6ZVD7 989 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 DZIP1Q86YF9 867 aaKnown RBP5.76□□□□□ -1.49
USP28-213ENST00000544967 LCORLQ8N3X6 602 aa5.76□□□□□ -1.49
USP28-213ENST00000544967 MAGEB6Q8N7X4 407 aa5.76□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 74.9 ms