RNA–Protein interactions for RNA: ENST00000540021.5

MSH6-210, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 3,930 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-210ENST00000540021 USP17L13C9JLJ4 530 aa14.12□□□□□ -0.15
MSH6-210ENST00000540021 USP17L11C9JVI0 530 aa14.12□□□□□ -0.15
MSH6-210ENST00000540021 USP17L18D6R9N7 530 aa14.12□□□□□ -0.15
MSH6-210ENST00000540021 USP17L22D6RA61 530 aa14.12□□□□□ -0.15
MSH6-210ENST00000540021 USP17L17D6RBQ6 530 aa14.12□□□□□ -0.15
MSH6-210ENST00000540021 USP17L19D6RCP7 530 aa14.12□□□□□ -0.15
MSH6-210ENST00000540021 USP17L20D6RJB6 530 aa14.12□□□□□ -0.15
MSH6-210ENST00000540021 PDHBP11177 359 aa14.12□□□□□ -0.15
MSH6-210ENST00000540021 GCKP35557 465 aa14.12□□□□□ -0.15
MSH6-210ENST00000540021 USP17L24Q0WX57 530 aa14.12□□□□□ -0.15
MSH6-210ENST00000540021 TCP10Q12799 353 aa14.12□□□□□ -0.15
MSH6-210ENST00000540021 MYO1EQ12965 1108 aa14.12□□□□□ -0.15
MSH6-210ENST00000540021 USP17L6PQ6QN14 398 aa14.12□□□□□ -0.15
MSH6-210ENST00000540021 PBKQ96KB5 322 aa14.12□□□□□ -0.15
MSH6-210ENST00000540021 SALL4Q9UJQ4 1053 aa14.12□□□□□ -0.15
MSH6-210ENST00000540021 FRMD4BQ9Y2L6 1034 aa14.12□□□□□ -0.15
MSH6-210ENST00000540021 PVALEFA0A1B0GWK0 134 aa14.11□□□□□ -0.15
MSH6-210ENST00000540021 A0A1W2PQJ5 194 aa14.11□□□□□ -0.15
MSH6-210ENST00000540021 POTEFA5A3E0 1075 aa14.11□□□□□ -0.15
MSH6-210ENST00000540021 EXOC3O60645 756 aa14.11□□□□□ -0.15
MSH6-210ENST00000540021 POTEIP0CG38 1075 aa14.11□□□□□ -0.15
MSH6-210ENST00000540021 RFC4P35249 363 aa14.11□□□□□ -0.15
MSH6-210ENST00000540021 DR1Q01658 176 aa14.11□□□□□ -0.15
MSH6-210ENST00000540021 PTK2Q05397 1052 aa14.11□□□□□ -0.15
MSH6-210ENST00000540021 MIIPQ5JXC2 388 aa14.11□□□□□ -0.15
MSH6-210ENST00000540021 POTEGQ6S5H5 508 aa14.11□□□□□ -0.15
MSH6-210ENST00000540021 POTEEQ6S8J3 1075 aa14.11□□□□□ -0.15
MSH6-210ENST00000540021 KDM7AQ6ZMT4 941 aa14.11□□□□□ -0.15
MSH6-210ENST00000540021 USP38Q8NB14 1042 aa14.11□□□□□ -0.15
MSH6-210ENST00000540021 GDAP1Q8TB36 358 aa14.11□□□□□ -0.15
MSH6-210ENST00000540021 SEC16BQ96JE7 1060 aa14.11□□□□□ -0.15
MSH6-210ENST00000540021 ACTR5Q9H9F9 607 aaPredicted RBP14.11□□□□□ -0.15
MSH6-210ENST00000540021 SRP68Q9UHB9 627 aaKnown RBP14.11□□□□□ -0.15
MSH6-210ENST00000540021 MTUS1Q9ULD2 1270 aa14.11□□□□□ -0.15
MSH6-210ENST00000540021 CCDC169A6NNP5 214 aa14.11□□□□□ -0.15
MSH6-210ENST00000540021 NKRFO15226 690 aaKnown RBP eCLIP14.11□□□□□ -0.15
MSH6-210ENST00000540021 LACTBP83111 547 aaPredicted RBP14.11□□□□□ -0.15
MSH6-210ENST00000540021 SNX1Q13596 522 aa14.11□□□□□ -0.15
MSH6-210ENST00000540021 SLF2Q8IX21 1173 aa14.11□□□□□ -0.15
MSH6-210ENST00000540021 STMN4Q9H169 189 aaPredicted RBP14.11□□□□□ -0.15
MSH6-210ENST00000540021 DDX39AO00148 427 aaKnown RBP14.11□□□□□ -0.15
MSH6-210ENST00000540021 SLC37A4O43826 429 aa14.11□□□□□ -0.15
MSH6-210ENST00000540021 PRPHP41219 470 aa14.11□□□□□ -0.15
MSH6-210ENST00000540021 GSTA5Q7RTV2 222 aa14.11□□□□□ -0.15
MSH6-210ENST00000540021 VSIG1Q86XK7 387 aa14.11□□□□□ -0.15
MSH6-210ENST00000540021 GLYCTKQ8IVS8 523 aa14.11□□□□□ -0.15
MSH6-210ENST00000540021 MSL3Q8N5Y2 521 aaKnown RBP14.11□□□□□ -0.15
MSH6-210ENST00000540021 ANKS1AQ92625 1134 aa14.11□□□□□ -0.15
MSH6-210ENST00000540021 ZMYND12Q9H0C1 365 aa14.11□□□□□ -0.15
MSH6-210ENST00000540021 HLA-DOAP06340 250 aa14.1□□□□□ -0.15
MSH6-210ENST00000540021 GJB7Q6PEY0 223 aa14.1□□□□□ -0.15
MSH6-210ENST00000540021 UBL4BQ8N7F7 174 aa14.1□□□□□ -0.15
MSH6-210ENST00000540021 NEK9Q8TD19 979 aa14.1□□□□□ -0.15
MSH6-210ENST00000540021 AZI2Q9H6S1 392 aa14.1□□□□□ -0.15
MSH6-210ENST00000540021 FAM114A2Q9NRY5 505 aa14.1□□□□□ -0.15
MSH6-210ENST00000540021 TMOD4Q9NZQ9 345 aa14.1□□□□□ -0.15
MSH6-210ENST00000540021 CHORDC1Q9UHD1 332 aaPredicted RBP14.1□□□□□ -0.15
MSH6-210ENST00000540021 MAD2L2Q9UI95 211 aa14.1□□□□□ -0.15
MSH6-210ENST00000540021 SUFUQ9UMX1 484 aa14.1□□□□□ -0.15
MSH6-210ENST00000540021 CEP83Q9Y592 693 aa14.1□□□□□ -0.15
MSH6-210ENST00000540021 SSU72P8A0A1W2PR75 194 aa14.1□□□□□ -0.15
MSH6-210ENST00000540021 ACSL3O95573 720 aa14.1□□□□□ -0.15
MSH6-210ENST00000540021 SLC8A1P32418 973 aa14.1□□□□□ -0.15
MSH6-210ENST00000540021 TRIP13Q15645 432 aaPredicted RBP14.1□□□□□ -0.15
MSH6-210ENST00000540021 NAB2Q15742 525 aa14.1□□□□□ -0.15
MSH6-210ENST00000540021 C12orf60Q5U649 245 aa14.1□□□□□ -0.15
MSH6-210ENST00000540021 NUDT12Q9BQG2 462 aa14.1□□□□□ -0.15
MSH6-210ENST00000540021 NYXQ9GZU5 481 aa14.1□□□□□ -0.15
MSH6-210ENST00000540021 ITGA4P13612 1032 aa14.1□□□□□ -0.15
MSH6-210ENST00000540021 EEF2P13639 858 aaKnown RBP14.1□□□□□ -0.15
MSH6-210ENST00000540021 GRB10Q13322 594 aa14.1□□□□□ -0.15
MSH6-210ENST00000540021 INTS8Q75QN2 995 aaKnown RBP14.1□□□□□ -0.15
MSH6-210ENST00000540021 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.1□□□□□ -0.157e-7■■□□□ 13.6
MSH6-210ENST00000540021 GEMIN8Q9NWZ8 242 aaKnown RBP14.1□□□□□ -0.15
MSH6-210ENST00000540021 PCDHA1Q9Y5I3 950 aa14.1□□□□□ -0.15
MSH6-210ENST00000540021 CENPPQ6IPU0 288 aa14.09□□□□□ -0.15
MSH6-210ENST00000540021 PHLDB2Q86SQ0 1253 aa14.09□□□□□ -0.15
MSH6-210ENST00000540021 TNFRSF25Q93038 417 aa14.09□□□□□ -0.15
MSH6-210ENST00000540021 KLHL29Q96CT2 875 aa14.09□□□□□ -0.15
MSH6-210ENST00000540021 PLCB1Q9NQ66 1216 aa14.09□□□□□ -0.15
MSH6-210ENST00000540021 NKIRAS1Q9NYS0 192 aa14.09□□□□□ -0.15
MSH6-210ENST00000540021 RTCBQ9Y3I0 505 aaKnown RBP14.09□□□□□ -0.15
MSH6-210ENST00000540021 TUBGCP6Q96RT7 1819 aa14.09□□□□□ -0.15
MSH6-210ENST00000540021 CYTH3O43739 400 aa14.09□□□□□ -0.15
MSH6-210ENST00000540021 BIRC3Q13489 604 aa14.09□□□□□ -0.15
MSH6-210ENST00000540021 TAOK1Q7L7X3 1001 aa14.09□□□□□ -0.15
MSH6-210ENST00000540021 SFR1Q86XK3 245 aa14.09□□□□□ -0.15
MSH6-210ENST00000540021 PLCG2P16885 1265 aa14.09□□□□□ -0.15
MSH6-210ENST00000540021 STX2P32856 288 aa14.09□□□□□ -0.15
MSH6-210ENST00000540021 ERVK-9P63128 1117 aa14.09□□□□□ -0.15
MSH6-210ENST00000540021 NPY5RQ15761 445 aa14.09□□□□□ -0.15
MSH6-210ENST00000540021 CCDC6Q16204 474 aa14.09□□□□□ -0.15
MSH6-210ENST00000540021 WDR3Q9UNX4 943 aaKnown RBP eCLIP14.09□□□□□ -0.15
MSH6-210ENST00000540021 CTDP1Q9Y5B0 961 aaPredicted RBP14.09□□□□□ -0.15
MSH6-210ENST00000540021 KDM3AQ9Y4C1 1321 aa14.09□□□□□ -0.15
MSH6-210ENST00000540021 PCK1P35558 622 aa14.09□□□□□ -0.15
MSH6-210ENST00000540021 SCNN1DP51172 638 aa14.09□□□□□ -0.15
MSH6-210ENST00000540021 UBXN2AP68543 259 aa14.09□□□□□ -0.15
MSH6-210ENST00000540021 GTF2IP78347 998 aa14.09□□□□□ -0.15
MSH6-210ENST00000540021 ATP11AP98196 1134 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 125.8 ms