RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 EPHA7Q15375 998 aa16.81■□□□□ 0.28
NUP54-213ENST00000513352 IL17AQ16552 155 aa16.81■□□□□ 0.28
NUP54-213ENST00000513352 TPRNQ4KMQ1 711 aa16.81■□□□□ 0.28
NUP54-213ENST00000513352 CCSAPQ6IQ19 270 aaPredicted RBP16.81■□□□□ 0.28
NUP54-213ENST00000513352 CCDC60Q8IWA6 550 aaPredicted RBP16.81■□□□□ 0.28
NUP54-213ENST00000513352 KRI1Q8N9T8 703 aaKnown RBP16.81■□□□□ 0.28
NUP54-213ENST00000513352 BANK1Q8NDB2 785 aa16.81■□□□□ 0.28
NUP54-213ENST00000513352 KCNG4Q8TDN1 519 aa16.81■□□□□ 0.28
NUP54-213ENST00000513352 GLT1D1Q96MS3 346 aa16.81■□□□□ 0.28
NUP54-213ENST00000513352 EIF2AK1Q9BQI3 630 aaKnown RBP16.81■□□□□ 0.28
NUP54-213ENST00000513352 KATNAL1Q9BW62 490 aa16.81■□□□□ 0.28
NUP54-213ENST00000513352 SENP6Q9GZR1 1112 aaPredicted RBP16.81■□□□□ 0.28
NUP54-213ENST00000513352 STARD7Q9NQZ5 370 aa16.81■□□□□ 0.28
NUP54-213ENST00000513352 PHF24Q9UPV7 400 aa16.81■□□□□ 0.28
NUP54-213ENST00000513352 PP2D1A8MPX8 630 aa16.8■□□□□ 0.28
NUP54-213ENST00000513352 LGR5O75473 907 aa16.8■□□□□ 0.28
NUP54-213ENST00000513352 CABYRO75952 493 aa16.8■□□□□ 0.28
NUP54-213ENST00000513352 PSEN2P49810 448 aa16.8■□□□□ 0.28
NUP54-213ENST00000513352 MFSD10Q14728 455 aa16.8■□□□□ 0.28
NUP54-213ENST00000513352 ZRSR1Q15695 479 aaKnown RBP16.8■□□□□ 0.28
NUP54-213ENST00000513352 UGCGQ16739 394 aa16.8■□□□□ 0.28
NUP54-213ENST00000513352 FAM47CQ5HY64 1035 aa16.8■□□□□ 0.28
NUP54-213ENST00000513352 B3GNT9Q6UX72 402 aa16.8■□□□□ 0.28
NUP54-213ENST00000513352 SNX29Q8TEQ0 813 aa16.8■□□□□ 0.28
NUP54-213ENST00000513352 PPP1R13LQ8WUF5 828 aa16.8■□□□□ 0.28
NUP54-213ENST00000513352 TNPO1Q92973 898 aaKnown RBP16.8■□□□□ 0.28
NUP54-213ENST00000513352 ATP6V0A1Q93050 837 aa16.8■□□□□ 0.28
NUP54-213ENST00000513352 DYDC2Q96IM9 177 aa16.8■□□□□ 0.28
NUP54-213ENST00000513352 PAWRQ96IZ0 340 aaKnown RBP16.8■□□□□ 0.28
NUP54-213ENST00000513352 CLIC6Q96NY7 704 aa16.8■□□□□ 0.28
NUP54-213ENST00000513352 PCYT2Q99447 389 aa16.8■□□□□ 0.28
NUP54-213ENST00000513352 C11orf49Q9H6J7 331 aa16.8■□□□□ 0.28
NUP54-213ENST00000513352 GDPD2Q9HCC8 539 aa16.8■□□□□ 0.28
NUP54-213ENST00000513352 FBXO2Q9UK22 296 aaPredicted RBP16.8■□□□□ 0.28
NUP54-213ENST00000513352 TRPC6Q9Y210 931 aa16.8■□□□□ 0.28
NUP54-213ENST00000513352 KAT6AQ92794 2004 aa16.8■□□□□ 0.28
NUP54-213ENST00000513352 H3BRB1 525 aa16.79■□□□□ 0.28
NUP54-213ENST00000513352 F2P00734 622 aa16.79■□□□□ 0.28
NUP54-213ENST00000513352 P4HBP07237 508 aaKnown RBP16.79■□□□□ 0.28
NUP54-213ENST00000513352 CDC25AP30304 524 aa16.79■□□□□ 0.28
NUP54-213ENST00000513352 LONP1P36776 959 aaKnown RBP16.79■□□□□ 0.28
NUP54-213ENST00000513352 CCT6AP40227 531 aaKnown RBP16.79■□□□□ 0.28
NUP54-213ENST00000513352 GRIN1Q05586 938 aa16.79■□□□□ 0.28
NUP54-213ENST00000513352 CTTNQ14247 550 aaKnown RBP16.79■□□□□ 0.28
NUP54-213ENST00000513352 PDIA5Q14554 519 aa16.79■□□□□ 0.28
NUP54-213ENST00000513352 KIAA0753Q2KHM9 967 aa16.79■□□□□ 0.28
NUP54-213ENST00000513352 KRT79Q5XKE5 535 aa16.79■□□□□ 0.28
NUP54-213ENST00000513352 HAUS3Q68CZ6 603 aa16.79■□□□□ 0.28
NUP54-213ENST00000513352 NECAB2Q7Z6G3 386 aa16.79■□□□□ 0.28
NUP54-213ENST00000513352 TPH2Q8IWU9 490 aa16.79■□□□□ 0.28
NUP54-213ENST00000513352 RASSF8Q8NHQ8 419 aa16.79■□□□□ 0.28
NUP54-213ENST00000513352 NEK9Q8TD19 979 aa16.79■□□□□ 0.28
NUP54-213ENST00000513352 LEO1Q8WVC0 666 aaPredicted RBP16.79■□□□□ 0.28
NUP54-213ENST00000513352 LXNQ9BS40 222 aa16.79■□□□□ 0.28
NUP54-213ENST00000513352 C16orf70Q9BSU1 422 aa16.79■□□□□ 0.28
NUP54-213ENST00000513352 SCAND2PQ9GZW5 306 aaPredicted RBP16.79■□□□□ 0.28
NUP54-213ENST00000513352 CSRNP2Q9H175 543 aa16.79■□□□□ 0.28
NUP54-213ENST00000513352 TUT1Q9H6E5 874 aaKnown RBP16.79■□□□□ 0.28
NUP54-213ENST00000513352 ERAP1Q9NZ08 941 aa16.79■□□□□ 0.28
NUP54-213ENST00000513352 RGL1Q9NZL6 768 aa16.79■□□□□ 0.28
NUP54-213ENST00000513352 SRPRBQ9Y5M8 271 aaKnown RBP16.79■□□□□ 0.28
NUP54-213ENST00000513352 SCN10AQ9Y5Y9 1956 aa16.78■□□□□ 0.28
NUP54-213ENST00000513352 IGSF9BQ9UPX0 1349 aa16.78■□□□□ 0.28
NUP54-213ENST00000513352 IGKV6D-21A0A0A0MT36 114 aa16.78■□□□□ 0.28
NUP54-213ENST00000513352 A0A0U1RQG5 324 aaPredicted RBP16.78■□□□□ 0.28
NUP54-213ENST00000513352 DKC1O60832 514 aaKnown RBP eCLIP16.78■□□□□ 0.28
NUP54-213ENST00000513352 PPP6R2O75170 966 aa16.78■□□□□ 0.28
NUP54-213ENST00000513352 QARSP47897 775 aaKnown RBP16.78■□□□□ 0.28
NUP54-213ENST00000513352 MNX1P50219 401 aaPredicted RBP16.78■□□□□ 0.28
NUP54-213ENST00000513352 ATN1P54259 1190 aaPredicted RBP16.78■□□□□ 0.28
NUP54-213ENST00000513352 PSMC5P62195 406 aa16.78■□□□□ 0.28
NUP54-213ENST00000513352 PRKCEQ02156 737 aa16.78■□□□□ 0.28
NUP54-213ENST00000513352 NBPF20Q3BBV1 942 aa16.78■□□□□ 0.28
NUP54-213ENST00000513352 SPECC1Q5M775 1068 aa16.78■□□□□ 0.28
NUP54-213ENST00000513352 PLPPR4Q7Z2D5 763 aa16.78■□□□□ 0.28
NUP54-213ENST00000513352 IGSF22Q8N9C0 903 aa16.78■□□□□ 0.28
NUP54-213ENST00000513352 AFAP1L1Q8TED9 768 aa16.78■□□□□ 0.28
NUP54-213ENST00000513352 KAT2BQ92831 832 aa16.78■□□□□ 0.28
NUP54-213ENST00000513352 CDK5RAP3Q96JB5 506 aa16.78■□□□□ 0.28
NUP54-213ENST00000513352 RCOR1Q9UKL0 485 aa16.78■□□□□ 0.28
NUP54-213ENST00000513352 STK24Q9Y6E0 443 aa16.78■□□□□ 0.28
NUP54-213ENST00000513352 CUTAO60888 179 aa16.77■□□□□ 0.28
NUP54-213ENST00000513352 TXLNAP40222 546 aa16.77■□□□□ 0.28
NUP54-213ENST00000513352 UBA7P41226 1012 aa16.77■□□□□ 0.28
NUP54-213ENST00000513352 ITGA7Q13683 1181 aa16.77■□□□□ 0.28
NUP54-213ENST00000513352 CABP7Q86V35 215 aa16.77■□□□□ 0.28
NUP54-213ENST00000513352 C7orf31Q8N865 590 aa16.77■□□□□ 0.28
NUP54-213ENST00000513352 AK8Q96MA6 479 aa16.77■□□□□ 0.28
NUP54-213ENST00000513352 SEPT9Q9UHD8 586 aaPredicted RBP16.77■□□□□ 0.28
NUP54-213ENST00000513352 MAFBQ9Y5Q3 323 aaPredicted RBP16.77■□□□□ 0.28
NUP54-213ENST00000513352 MORC2Q9Y6X9 1032 aaPredicted RBP16.77■□□□□ 0.28
NUP54-213ENST00000513352 POTEB3A0JP26 581 aa16.76■□□□□ 0.27
NUP54-213ENST00000513352 DDX11L8A8MPP1 907 aa16.76■□□□□ 0.27
NUP54-213ENST00000513352 MED24O75448 989 aa16.76■□□□□ 0.27
NUP54-213ENST00000513352 OATP04181 439 aa16.76■□□□□ 0.27
NUP54-213ENST00000513352 SLC26A2P50443 739 aa16.76■□□□□ 0.27
NUP54-213ENST00000513352 IGBP1P78318 339 aa16.76■□□□□ 0.27
NUP54-213ENST00000513352 PLCB4Q15147 1175 aa16.76■□□□□ 0.27
NUP54-213ENST00000513352 POTEBQ6S5H4 581 aa16.76■□□□□ 0.27
NUP54-213ENST00000513352 FAM167AQ96KS9 214 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms