RNA–Protein interactions for RNA: ENST00000510569.5

NUP54-209, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-209ENST00000510569 TANGO6Q9C0B7 1094 aa7.96□□□□□ -1.14
NUP54-209ENST00000510569 SEC61A2Q9H9S3 476 aa7.96□□□□□ -1.14
NUP54-209ENST00000510569 ZDHHC9Q9Y397 364 aa7.96□□□□□ -1.14
NUP54-209ENST00000510569 H0Y858 1186 aa7.95□□□□□ -1.14
NUP54-209ENST00000510569 PTPN1P18031 435 aaKnown RBP7.95□□□□□ -1.14
NUP54-209ENST00000510569 NAT1P18440 290 aa7.95□□□□□ -1.14
NUP54-209ENST00000510569 GABREP78334 506 aa7.95□□□□□ -1.14
NUP54-209ENST00000510569 RASA3Q14644 834 aa7.95□□□□□ -1.14
NUP54-209ENST00000510569 ARHGAP36Q6ZRI8 547 aa7.95□□□□□ -1.14
NUP54-209ENST00000510569 FBXW5Q969U6 566 aa7.95□□□□□ -1.14
NUP54-209ENST00000510569 ARMC5Q96C12 935 aa7.95□□□□□ -1.14
NUP54-209ENST00000510569 PTPN18Q99952 460 aa7.95□□□□□ -1.14
NUP54-209ENST00000510569 JADE2Q9NQC1 790 aa7.95□□□□□ -1.14
NUP54-209ENST00000510569 MAN2B1O00754 1011 aa7.94□□□□□ -1.14
NUP54-209ENST00000510569 AMY2AP04746 511 aa7.94□□□□□ -1.14
NUP54-209ENST00000510569 AMY2BP19961 511 aa7.94□□□□□ -1.14
NUP54-209ENST00000510569 BTBD8Q5XKL5 378 aa7.94□□□□□ -1.14
NUP54-209ENST00000510569 C16orf59Q7L2K0 433 aa7.94□□□□□ -1.14
NUP54-209ENST00000510569 LRP10Q7Z4F1 713 aa7.94□□□□□ -1.14
NUP54-209ENST00000510569 KISS1RQ969F8 398 aaPredicted RBP7.94□□□□□ -1.14
NUP54-209ENST00000510569 IPO9Q96P70 1041 aaKnown RBP7.94□□□□□ -1.14
NUP54-209ENST00000510569 TACO1Q9BSH4 297 aaKnown RBP7.94□□□□□ -1.14
NUP54-209ENST00000510569 KLC2Q9H0B6 622 aa7.94□□□□□ -1.14
NUP54-209ENST00000510569 PCDHA8Q9Y5H6 950 aa7.94□□□□□ -1.14
NUP54-209ENST00000510569 CCDC85CA6NKD9 419 aa7.93□□□□□ -1.14
NUP54-209ENST00000510569 FAM90A27PA6NNH2 459 aa7.93□□□□□ -1.14
NUP54-209ENST00000510569 FAM153BP0C7A2 387 aa7.93□□□□□ -1.14
NUP54-209ENST00000510569 GJA4P35212 333 aa7.93□□□□□ -1.14
NUP54-209ENST00000510569 SELENOPP49908 381 aa7.93□□□□□ -1.14
NUP54-209ENST00000510569 GUCY1A3Q02108 690 aa7.93□□□□□ -1.14
NUP54-209ENST00000510569 CDK5RAP1Q96SZ6 601 aaKnown RBP7.93□□□□□ -1.14
NUP54-209ENST00000510569 HIRIP3Q9BW71 556 aaPredicted RBP7.93□□□□□ -1.14
NUP54-209ENST00000510569 SLC39A2Q9NP94 309 aa7.93□□□□□ -1.14
NUP54-209ENST00000510569 CBLCQ9ULV8 474 aa7.93□□□□□ -1.14
NUP54-209ENST00000510569 MRPS23Q9Y3D9 190 aaKnown RBP7.93□□□□□ -1.14
NUP54-209ENST00000510569 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP7.92□□□□□ -1.14
NUP54-209ENST00000510569 ZNF561-AS1K7EIQ3 104 aa7.92□□□□□ -1.14
NUP54-209ENST00000510569 CUTAO60888 179 aa7.92□□□□□ -1.14
NUP54-209ENST00000510569 PYGMP11217 842 aa7.92□□□□□ -1.14
NUP54-209ENST00000510569 PDE6AP16499 860 aa7.92□□□□□ -1.14
NUP54-209ENST00000510569 ZXDAP98168 799 aa7.92□□□□□ -1.14
NUP54-209ENST00000510569 R3HDM1Q15032 1099 aaKnown RBP7.92□□□□□ -1.14
NUP54-209ENST00000510569 ZC3H12BQ5HYM0 836 aaKnown RBP7.92□□□□□ -1.14
NUP54-209ENST00000510569 GPR155Q7Z3F1 870 aa7.92□□□□□ -1.14
NUP54-209ENST00000510569 WWC2-AS2Q96NR7 200 aa7.92□□□□□ -1.14
NUP54-209ENST00000510569 DHRS4Q9BTZ2 278 aa7.92□□□□□ -1.14
NUP54-209ENST00000510569 CATSPERZQ9NTU4 200 aa7.92□□□□□ -1.14
NUP54-209ENST00000510569 ATP23Q9Y6H3 246 aa7.92□□□□□ -1.14
NUP54-209ENST00000510569 POLD1P28340 1107 aa7.91□□□□□ -1.14
NUP54-209ENST00000510569 TOP3AQ13472 1001 aaPredicted RBP7.91□□□□□ -1.14
NUP54-209ENST00000510569 USP10Q14694 798 aaKnown RBP7.91□□□□□ -1.14
NUP54-209ENST00000510569 PTRH1Q86Y79 214 aaKnown RBP7.91□□□□□ -1.14
NUP54-209ENST00000510569 IFNL2Q8IZJ0 200 aa7.91□□□□□ -1.14
NUP54-209ENST00000510569 RIC8BQ9NVN3 520 aa7.91□□□□□ -1.14
NUP54-209ENST00000510569 PPP1R1BQ9UD71 204 aaPredicted RBP7.91□□□□□ -1.14
NUP54-209ENST00000510569 C4BPAP04003 597 aaKnown RBP7.9□□□□□ -1.14
NUP54-209ENST00000510569 FAM47CQ5HY64 1035 aa7.9□□□□□ -1.14
NUP54-209ENST00000510569 OSTM1Q86WC4 334 aa7.9□□□□□ -1.14
NUP54-209ENST00000510569 DEPDC7Q96QD5 511 aa7.9□□□□□ -1.14
NUP54-209ENST00000510569 SMURF1Q9HCE7 757 aa7.9□□□□□ -1.14
NUP54-209ENST00000510569 KDM2BQ8NHM5 1336 aa7.89□□□□□ -1.15
NUP54-209ENST00000510569 GSTA4O15217 222 aa7.89□□□□□ -1.15
NUP54-209ENST00000510569 CLASP2O75122 1294 aaKnown RBP7.89□□□□□ -1.15
NUP54-209ENST00000510569 ZNF623O75123 536 aa7.89□□□□□ -1.15
NUP54-209ENST00000510569 ZNF888P0CJ79 500 aaPredicted RBP7.89□□□□□ -1.15
NUP54-209ENST00000510569 AOAHP28039 575 aa7.89□□□□□ -1.15
NUP54-209ENST00000510569 ETV4P43268 484 aa7.89□□□□□ -1.15
NUP54-209ENST00000510569 JAM2P57087 298 aa7.89□□□□□ -1.15
NUP54-209ENST00000510569 LACTBP83111 547 aaPredicted RBP7.89□□□□□ -1.15
NUP54-209ENST00000510569 RBL2Q08999 1139 aa7.89□□□□□ -1.15
NUP54-209ENST00000510569 DPP8Q6V1X1 898 aaPredicted RBP7.89□□□□□ -1.15
NUP54-209ENST00000510569 GSTCDQ8NEC7 633 aa7.89□□□□□ -1.15
NUP54-209ENST00000510569 Q8TCH9 128 aa7.89□□□□□ -1.15
NUP54-209ENST00000510569 LMF1Q96S06 567 aa7.89□□□□□ -1.15
NUP54-209ENST00000510569 CARD11Q9BXL7 1154 aa7.89□□□□□ -1.15
NUP54-209ENST00000510569 SEMA4AQ9H3S1 761 aa7.89□□□□□ -1.15
NUP54-209ENST00000510569 SNTG2Q9NY99 539 aa7.89□□□□□ -1.15
NUP54-209ENST00000510569 BTBD7Q9P203 1132 aa7.89□□□□□ -1.15
NUP54-209ENST00000510569 ARHGAP28Q9P2N2 729 aa7.89□□□□□ -1.15
NUP54-209ENST00000510569 TCAF1Q9Y4C2 921 aa7.89□□□□□ -1.15
NUP54-209ENST00000510569 PCDHA9Q9Y5H5 950 aa7.89□□□□□ -1.15
NUP54-209ENST00000510569 CCDC66A2RUB6 948 aa7.88□□□□□ -1.15
NUP54-209ENST00000510569 FAM221BA6H8Z2 402 aa7.88□□□□□ -1.15
NUP54-209ENST00000510569 CRTAMO95727 393 aa7.88□□□□□ -1.15
NUP54-209ENST00000510569 PTGS1P23219 599 aa7.88□□□□□ -1.15
NUP54-209ENST00000510569 GTF2F1P35269 517 aaKnown RBP eCLIP7.88□□□□□ -1.15
NUP54-209ENST00000510569 HERVK_113P62684 666 aa7.88□□□□□ -1.15
NUP54-209ENST00000510569 ST5P78524 1137 aa7.88□□□□□ -1.15
NUP54-209ENST00000510569 CRY1Q16526 586 aa7.88□□□□□ -1.15
NUP54-209ENST00000510569 ZNF585AQ6P3V2 769 aa7.88□□□□□ -1.15
NUP54-209ENST00000510569 SPRED1Q7Z699 444 aa7.88□□□□□ -1.15
NUP54-209ENST00000510569 JMYQ8N9B5 988 aa7.88□□□□□ -1.15
NUP54-209ENST00000510569 SH3RF3Q8TEJ3 882 aaPredicted RBP7.88□□□□□ -1.15
NUP54-209ENST00000510569 DEF6Q9H4E7 631 aa7.88□□□□□ -1.15
NUP54-209ENST00000510569 PTPN22Q9Y2R2 807 aa7.88□□□□□ -1.15
NUP54-209ENST00000510569 SRGAP2CP0DJJ0 459 aa7.87□□□□□ -1.15
NUP54-209ENST00000510569 KRT15P19012 456 aa7.87□□□□□ -1.15
NUP54-209ENST00000510569 STILQ15468 1287 aa7.87□□□□□ -1.15
NUP54-209ENST00000510569 TRIM61Q5EBN2 209 aa7.87□□□□□ -1.15
NUP54-209ENST00000510569 TCTN3Q6NUS6 607 aa7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms