RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 PLA2G4DQ86XP0 818 aa22.08■■□□□ 1.13
USP40-207ENST00000450940 IL17RAQ96F46 866 aa22.08■■□□□ 1.13
USP40-207ENST00000450940 PDRG1Q9NUG6 133 aa22.08■■□□□ 1.13
USP40-207ENST00000450940 SIP14410 1827 aa22.08■■□□□ 1.12
USP40-207ENST00000450940 RRN3P2A6NIE6 340 aa22.07■■□□□ 1.12
USP40-207ENST00000450940 PPFIA3O75145 1194 aa22.07■■□□□ 1.12
USP40-207ENST00000450940 CCNE2O96020 404 aa22.07■■□□□ 1.12
USP40-207ENST00000450940 MARK3P27448 753 aa22.07■■□□□ 1.12
USP40-207ENST00000450940 CIITAP33076 1130 aa22.07■■□□□ 1.12
USP40-207ENST00000450940 ANAPC15P60006 121 aa22.07■■□□□ 1.12
USP40-207ENST00000450940 TRIM22Q8IYM9 498 aa22.07■■□□□ 1.12
USP40-207ENST00000450940 FAM177A1Q8N128 213 aaPredicted RBP22.07■■□□□ 1.12
USP40-207ENST00000450940 OSBPL7Q9BZF2 842 aa22.07■■□□□ 1.12
USP40-207ENST00000450940 AZI2Q9H6S1 392 aa22.07■■□□□ 1.12
USP40-207ENST00000450940 VPS54Q9P1Q0 977 aa22.07■■□□□ 1.12
USP40-207ENST00000450940 EDIL3O43854 480 aa22.06■■□□□ 1.12
USP40-207ENST00000450940 GJB5O95377 273 aa22.06■■□□□ 1.12
USP40-207ENST00000450940 INSRRP14616 1297 aa22.06■■□□□ 1.12
USP40-207ENST00000450940 STAT5BP51692 787 aa22.06■■□□□ 1.12
USP40-207ENST00000450940 TAP1Q03518 808 aa22.06■■□□□ 1.12
USP40-207ENST00000450940 SSRP1Q08945 709 aaKnown RBP22.06■■□□□ 1.12
USP40-207ENST00000450940 ABHD15Q6UXT9 468 aa22.06■■□□□ 1.12
USP40-207ENST00000450940 RUFY4Q6ZNE9 571 aa22.06■■□□□ 1.12
USP40-207ENST00000450940 TNPO1Q92973 898 aaKnown RBP22.06■■□□□ 1.12
USP40-207ENST00000450940 TUBE1Q9UJT0 475 aa22.06■■□□□ 1.12
USP40-207ENST00000450940 WDR81Q562E7 1941 aa22.06■■□□□ 1.12
USP40-207ENST00000450940 IPO5O00410 1097 aaKnown RBP22.05■■□□□ 1.12
USP40-207ENST00000450940 TLL1O43897 1013 aa22.05■■□□□ 1.12
USP40-207ENST00000450940 ARHGEF15O94989 841 aa22.05■■□□□ 1.12
USP40-207ENST00000450940 DEXIO95424 95 aa22.05■■□□□ 1.12
USP40-207ENST00000450940 CHRNA1P02708 482 aa22.05■■□□□ 1.12
USP40-207ENST00000450940 RPLP2P05387 115 aaKnown RBP22.05■■□□□ 1.12
USP40-207ENST00000450940 CENPBP07199 599 aaPredicted RBP22.05■■□□□ 1.12
USP40-207ENST00000450940 SLC26A2P50443 739 aa22.05■■□□□ 1.12
USP40-207ENST00000450940 SETQ01105 290 aaPredicted RBP22.05■■□□□ 1.12
USP40-207ENST00000450940 PLCB4Q15147 1175 aa22.05■■□□□ 1.12
USP40-207ENST00000450940 RASGRP4Q8TDF6 673 aa22.05■■□□□ 1.12
USP40-207ENST00000450940 SEPT8Q92599 483 aa22.05■■□□□ 1.12
USP40-207ENST00000450940 RAD9AQ99638 391 aa22.05■■□□□ 1.12
USP40-207ENST00000450940 LARP6Q9BRS8 491 aaKnown RBP22.05■■□□□ 1.12
USP40-207ENST00000450940 TBC1D22BQ9NU19 505 aa22.05■■□□□ 1.12
USP40-207ENST00000450940 MYH9P35579 1960 aaKnown RBP22.05■■□□□ 1.12
USP40-207ENST00000450940 CPLX1O14810 134 aa22.04■■□□□ 1.12
USP40-207ENST00000450940 CTSHP09668 335 aa22.04■■□□□ 1.12
USP40-207ENST00000450940 POU3F3P20264 500 aaPredicted RBP22.04■■□□□ 1.12
USP40-207ENST00000450940 MGAT3Q09327 533 aa22.04■■□□□ 1.12
USP40-207ENST00000450940 LIN28BQ6ZN17 250 aaKnown RBP eCLIP22.04■■□□□ 1.12
USP40-207ENST00000450940 TMCO2Q7Z6W1 182 aaPredicted RBP22.04■■□□□ 1.12
USP40-207ENST00000450940 USP38Q8NB14 1042 aa22.04■■□□□ 1.12
USP40-207ENST00000450940 LENG9Q96B70 501 aa22.04■■□□□ 1.12
USP40-207ENST00000450940 RBAK-RBAKDNI3L0D1 243 aa22.03■■□□□ 1.12
USP40-207ENST00000450940 USP11P51784 963 aa22.03■■□□□ 1.12
USP40-207ENST00000450940 CPLX2Q6PUV4 134 aaKnown RBP22.03■■□□□ 1.12
USP40-207ENST00000450940 RSPH3Q86UC2 560 aa22.03■■□□□ 1.12
USP40-207ENST00000450940 APBB2Q92870 758 aa22.03■■□□□ 1.12
USP40-207ENST00000450940 ZNF577Q9BSK1 485 aa22.03■■□□□ 1.12
USP40-207ENST00000450940 ZBED2Q9BTP6 218 aa22.03■■□□□ 1.12
USP40-207ENST00000450940 LCHNA4D1U4 455 aa22.02■■□□□ 1.12
USP40-207ENST00000450940 M0R2N6 131 aa22.02■■□□□ 1.12
USP40-207ENST00000450940 NLRP5P59047 1200 aa22.02■■□□□ 1.12
USP40-207ENST00000450940 STK3Q13188 491 aa22.02■■□□□ 1.12
USP40-207ENST00000450940 NPY5RQ15761 445 aa22.02■■□□□ 1.12
USP40-207ENST00000450940 ZNF746Q6NUN9 644 aaPredicted RBP22.02■■□□□ 1.12
USP40-207ENST00000450940 DAGLBQ8NCG7 672 aa22.02■■□□□ 1.12
USP40-207ENST00000450940 PCDHA4Q9UN74 947 aa22.02■■□□□ 1.12
USP40-207ENST00000450940 PCDHA2Q9Y5H9 948 aa22.02■■□□□ 1.12
USP40-207ENST00000450940 CUL9Q8IWT3 2517 aa22.02■■□□□ 1.11
USP40-207ENST00000450940 POTEB3A0JP26 581 aa22.01■■□□□ 1.11
USP40-207ENST00000450940 DLL1O00548 723 aa22.01■■□□□ 1.11
USP40-207ENST00000450940 EIF5BO60841 1220 aaKnown RBP22.01■■□□□ 1.11
USP40-207ENST00000450940 AMHP03971 560 aa22.01■■□□□ 1.11
USP40-207ENST00000450940 HTRA4P83105 476 aaPredicted RBP22.01■■□□□ 1.11
USP40-207ENST00000450940 SCRN1Q12765 414 aa22.01■■□□□ 1.11
USP40-207ENST00000450940 PRR16Q569H4 304 aa22.01■■□□□ 1.11
USP40-207ENST00000450940 FAM160B1Q5W0V3 765 aa22.01■■□□□ 1.11
USP40-207ENST00000450940 GALNT17Q6IS24 598 aa22.01■■□□□ 1.11
USP40-207ENST00000450940 POTEBQ6S5H4 581 aa22.01■■□□□ 1.11
USP40-207ENST00000450940 CCDC60Q8IWA6 550 aaPredicted RBP22.01■■□□□ 1.11
USP40-207ENST00000450940 DNAJB3Q8WWF6 145 aa22.01■■□□□ 1.11
USP40-207ENST00000450940 C22orf23Q9BZE7 217 aa22.01■■□□□ 1.11
USP40-207ENST00000450940 TPCN1Q9ULQ1 816 aa22.01■■□□□ 1.11
USP40-207ENST00000450940 TRPC6Q9Y210 931 aa22.01■■□□□ 1.11
USP40-207ENST00000450940 LOXHD1Q8IVV2 1947 aa22.01■■□□□ 1.11
USP40-207ENST00000450940 REV3LO60673 3130 aa22.01■■□□□ 1.11
USP40-207ENST00000450940 LOC101059915A0A1B0GWI6 518 aaPredicted RBP22■■□□□ 1.11
USP40-207ENST00000450940 EPOPA6NHQ4 379 aa22■■□□□ 1.11
USP40-207ENST00000450940 DDX39AO00148 427 aaKnown RBP22■■□□□ 1.11
USP40-207ENST00000450940 PFKFB2O60825 505 aa22■■□□□ 1.11
USP40-207ENST00000450940 IGFBP4P22692 258 aa22■■□□□ 1.11
USP40-207ENST00000450940 IGBP1P78318 339 aa22■■□□□ 1.11
USP40-207ENST00000450940 MIS18BP1Q6P0N0 1132 aa22■■□□□ 1.11
USP40-207ENST00000450940 SMAP1Q8IYB5 467 aaPredicted RBP22■■□□□ 1.11
USP40-207ENST00000450940 BLIDQ8IZY5 108 aa22■■□□□ 1.11
USP40-207ENST00000450940 ATP8B4Q8TF62 1192 aa22■■□□□ 1.11
USP40-207ENST00000450940 TOP1MTQ969P6 601 aa22■■□□□ 1.11
USP40-207ENST00000450940 IFIH1Q9BYX4 1025 aaKnown RBP22■■□□□ 1.11
USP40-207ENST00000450940 INSL6Q9Y581 213 aa22■■□□□ 1.11
USP40-207ENST00000450940 MAFBQ9Y5Q3 323 aaPredicted RBP22■■□□□ 1.11
USP40-207ENST00000450940 SQORQ9Y6N5 450 aa22■■□□□ 1.11
USP40-207ENST00000450940 SMIM35A0A1B0GVV1 85 aa21.99■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms