RNA–Protein interactions for RNA: ENST00000409769.6

CLK1-203, Transcript of CDC like kinase 1, humanhuman

TSL 2 BASIC

Gene CLK1, Length 1,192 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-203ENST00000409769 CDIP1Q9H305 208 aa6.43□□□□□ -1.38
CLK1-203ENST00000409769 ZSWIM4Q9H7M6 989 aa6.43□□□□□ -1.38
CLK1-203ENST00000409769 TCAF1Q9Y4C2 921 aa6.43□□□□□ -1.38
CLK1-203ENST00000409769 PBRM1Q86U86 1689 aa6.42□□□□□ -1.38
CLK1-203ENST00000409769 ZNF608Q9ULD9 1512 aaPredicted RBP6.42□□□□□ -1.38
CLK1-203ENST00000409769 TRBV23-1A0A0A0MS06 115 aa6.42□□□□□ -1.38
CLK1-203ENST00000409769 TACR2P21452 398 aa6.42□□□□□ -1.38
CLK1-203ENST00000409769 RANGAP1P46060 587 aaPredicted RBP6.42□□□□□ -1.38
CLK1-203ENST00000409769 SELENOPP49908 381 aa6.42□□□□□ -1.38
CLK1-203ENST00000409769 SUMO1P63165 101 aaKnown RBP6.42□□□□□ -1.38
CLK1-203ENST00000409769 BMS1Q14692 1282 aaKnown RBP6.42□□□□□ -1.38
CLK1-203ENST00000409769 ICAM4Q14773 271 aa6.42□□□□□ -1.38
CLK1-203ENST00000409769 SMAD2Q15796 467 aaKnown RBP6.42□□□□□ -1.38
CLK1-203ENST00000409769 NTRK3Q16288 839 aa6.42□□□□□ -1.38
CLK1-203ENST00000409769 KIZQ2M2Z5 673 aa6.42□□□□□ -1.38
CLK1-203ENST00000409769 YOD1Q5VVQ6 348 aaPredicted RBP6.42□□□□□ -1.38
CLK1-203ENST00000409769 USP51Q70EK9 711 aa6.42□□□□□ -1.38
CLK1-203ENST00000409769 LILRB2Q8N423 598 aa6.42□□□□□ -1.38
CLK1-203ENST00000409769 DTX3Q8N9I9 347 aa6.42□□□□□ -1.38
CLK1-203ENST00000409769 ZSWIM2Q8NEG5 633 aa6.42□□□□□ -1.38
CLK1-203ENST00000409769 DHRS4Q9BTZ2 278 aa6.42□□□□□ -1.38
CLK1-203ENST00000409769 DEF6Q9H4E7 631 aa6.42□□□□□ -1.38
CLK1-203ENST00000409769 SEC61A2Q9H9S3 476 aa6.42□□□□□ -1.38
CLK1-203ENST00000409769 CD248Q9HCU0 757 aa6.42□□□□□ -1.38
CLK1-203ENST00000409769 EIF4G3O43432 1585 aaKnown RBP6.42□□□□□ -1.38
CLK1-203ENST00000409769 ERICH3Q5RHP9 1530 aa6.41□□□□□ -1.38
CLK1-203ENST00000409769 KIF21BO75037 1637 aa6.41□□□□□ -1.38
CLK1-203ENST00000409769 CYR61O00622 381 aa6.41□□□□□ -1.38
CLK1-203ENST00000409769 GPR42O15529 346 aa6.41□□□□□ -1.38
CLK1-203ENST00000409769 B4GALT4O60513 344 aa6.41□□□□□ -1.38
CLK1-203ENST00000409769 C6P13671 934 aa6.41□□□□□ -1.38
CLK1-203ENST00000409769 SPIRE1Q08AE8 756 aa6.41□□□□□ -1.38
CLK1-203ENST00000409769 FOXB2Q5VYV0 432 aa6.41□□□□□ -1.38
CLK1-203ENST00000409769 TMC5Q6UXY8 1006 aa6.41□□□□□ -1.38
CLK1-203ENST00000409769 OTOP3Q7RTS5 596 aa6.41□□□□□ -1.38
CLK1-203ENST00000409769 MAMDC2Q7Z304 686 aaPredicted RBP6.41□□□□□ -1.38
CLK1-203ENST00000409769 SLC16A11Q8NCK7 471 aa6.41□□□□□ -1.38
CLK1-203ENST00000409769 UHMK1Q8TAS1 419 aaKnown RBP6.41□□□□□ -1.38
CLK1-203ENST00000409769 EXOC2Q96KP1 924 aa6.41□□□□□ -1.38
CLK1-203ENST00000409769 ZDHHC9Q9Y397 364 aa6.41□□□□□ -1.38
CLK1-203ENST00000409769 TDRD9Q8NDG6 1382 aaKnown RBP6.41□□□□□ -1.38
CLK1-203ENST00000409769 GAPVD1Q14C86 1478 aa6.41□□□□□ -1.38
CLK1-203ENST00000409769 PRXQ9BXM0 1461 aa6.41□□□□□ -1.38
CLK1-203ENST00000409769 PATE3B3GLJ2 98 aa6.4□□□□□ -1.38
CLK1-203ENST00000409769 FBXO21O94952 628 aa6.4□□□□□ -1.38
CLK1-203ENST00000409769 FSHBP01225 129 aa6.4□□□□□ -1.38
CLK1-203ENST00000409769 ENO2P09104 434 aaPredicted RBP6.4□□□□□ -1.38
CLK1-203ENST00000409769 GPR85P60893 370 aa6.4□□□□□ -1.38
CLK1-203ENST00000409769 FAM209AQ5JX71 171 aa6.4□□□□□ -1.38
CLK1-203ENST00000409769 CRIP3Q6Q6R5 217 aa6.4□□□□□ -1.38
CLK1-203ENST00000409769 RALYLQ86SE5 291 aaKnown RBP6.4□□□□□ -1.38
CLK1-203ENST00000409769 PROSER1Q86XN7 944 aa6.4□□□□□ -1.38
CLK1-203ENST00000409769 REXO1L1PQ8IX06 675 aa6.4□□□□□ -1.38
CLK1-203ENST00000409769 IFNL2Q8IZJ0 200 aa6.4□□□□□ -1.38
CLK1-203ENST00000409769 PUM2Q8TB72 1066 aaKnown RBP eCLIP6.4□□□□□ -1.383e-7■■■□□ 17.3
CLK1-203ENST00000409769 PIP4K2CQ8TBX8 421 aa6.4□□□□□ -1.38
CLK1-203ENST00000409769 IPO9Q96P70 1041 aaKnown RBP6.4□□□□□ -1.38
CLK1-203ENST00000409769 SORCS2Q96PQ0 1159 aa6.4□□□□□ -1.38
CLK1-203ENST00000409769 CDC6Q99741 560 aa6.4□□□□□ -1.38
CLK1-203ENST00000409769 PHF20Q9BVI0 1012 aa6.4□□□□□ -1.38
CLK1-203ENST00000409769 MRPS23Q9Y3D9 190 aaKnown RBP6.4□□□□□ -1.38
CLK1-203ENST00000409769 TESMINQ9Y4I5 508 aa6.4□□□□□ -1.38
CLK1-203ENST00000409769 AQRO60306 1485 aaKnown RBP eCLIP6.4□□□□□ -1.391e-7■■□□□ 11.6
CLK1-203ENST00000409769 CUL7Q14999 1698 aa6.39□□□□□ -1.39
CLK1-203ENST00000409769 SLC27A2O14975 620 aa6.39□□□□□ -1.39
CLK1-203ENST00000409769 MUSKO15146 869 aa6.39□□□□□ -1.39
CLK1-203ENST00000409769 FZD7O75084 574 aa6.39□□□□□ -1.39
CLK1-203ENST00000409769 C6orf222P0C671 652 aaPredicted RBP6.39□□□□□ -1.39
CLK1-203ENST00000409769 COL6A1P12109 1028 aa6.39□□□□□ -1.39
CLK1-203ENST00000409769 FAHP16930 419 aa6.39□□□□□ -1.39
CLK1-203ENST00000409769 GRK2P25098 689 aa6.39□□□□□ -1.39
CLK1-203ENST00000409769 GRK3P35626 688 aa6.39□□□□□ -1.39
CLK1-203ENST00000409769 CDSNQ15517 529 aa6.39□□□□□ -1.39
CLK1-203ENST00000409769 PAN2Q504Q3 1202 aaKnown RBP6.39□□□□□ -1.39
CLK1-203ENST00000409769 HS1BP3Q53T59 392 aa6.39□□□□□ -1.39
CLK1-203ENST00000409769 Q6ZUG5 572 aa6.39□□□□□ -1.39
CLK1-203ENST00000409769 USP53Q70EK8 1073 aa6.39□□□□□ -1.39
CLK1-203ENST00000409769 SPRED1Q7Z699 444 aa6.39□□□□□ -1.39
CLK1-203ENST00000409769 PTPRN2Q92932 1015 aa6.39□□□□□ -1.39
CLK1-203ENST00000409769 AJUBAQ96IF1 538 aa6.39□□□□□ -1.39
CLK1-203ENST00000409769 JAM3Q9BX67 310 aa6.39□□□□□ -1.39
CLK1-203ENST00000409769 PIF1Q9H611 641 aa6.39□□□□□ -1.39
CLK1-203ENST00000409769 WASF3Q9UPY6 502 aa6.39□□□□□ -1.39
CLK1-203ENST00000409769 KCNQ2O43526 872 aa6.38□□□□□ -1.39
CLK1-203ENST00000409769 ZNF623O75123 536 aa6.38□□□□□ -1.39
CLK1-203ENST00000409769 KLHL18O94889 574 aa6.38□□□□□ -1.39
CLK1-203ENST00000409769 GNAT1P11488 350 aa6.38□□□□□ -1.39
CLK1-203ENST00000409769 GABREP78334 506 aa6.38□□□□□ -1.39
CLK1-203ENST00000409769 TRIM61Q5EBN2 209 aa6.38□□□□□ -1.39
CLK1-203ENST00000409769 LBX2Q6XYB7 198 aa6.38□□□□□ -1.39
CLK1-203ENST00000409769 IFNL3Q8IZI9 196 aa6.38□□□□□ -1.39
CLK1-203ENST00000409769 FAM9AQ8IZU1 332 aaPredicted RBP6.38□□□□□ -1.39
CLK1-203ENST00000409769 MEGF9Q9H1U4 602 aa6.38□□□□□ -1.39
CLK1-203ENST00000409769 SLC4A7Q9Y6M7 1214 aa6.38□□□□□ -1.39
CLK1-203ENST00000409769 GRIN2BQ13224 1484 aa6.38□□□□□ -1.39
CLK1-203ENST00000409769 ADAMTS12P58397 1594 aa6.38□□□□□ -1.39
CLK1-203ENST00000409769 AQP7O14520 342 aa6.37□□□□□ -1.39
CLK1-203ENST00000409769 MSCO60682 206 aa6.37□□□□□ -1.39
CLK1-203ENST00000409769 KNG1P01042 644 aa6.37□□□□□ -1.39
CLK1-203ENST00000409769 NAT1P18440 290 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms