RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 FAM26FQ5R3K3 315 aa11.38□□□□□ -0.59
LIG1-220ENST00000601091 NT5DC1Q5TFE4 455 aa11.38□□□□□ -0.59
LIG1-220ENST00000601091 TRIM65Q6PJ69 517 aa11.38□□□□□ -0.59
LIG1-220ENST00000601091 LRRC47Q8N1G4 583 aaKnown RBP11.38□□□□□ -0.59
LIG1-220ENST00000601091 DCLK2Q8N568 766 aa11.38□□□□□ -0.59
LIG1-220ENST00000601091 BHMTQ93088 406 aa11.38□□□□□ -0.59
LIG1-220ENST00000601091 PIGSQ96S52 555 aa11.38□□□□□ -0.59
LIG1-220ENST00000601091 SLIT3O75094 1523 aa11.38□□□□□ -0.59
LIG1-220ENST00000601091 A0A1W2PQC6 194 aa11.38□□□□□ -0.59
LIG1-220ENST00000601091 PP2D1A8MPX8 630 aa11.38□□□□□ -0.59
LIG1-220ENST00000601091 H3BQF6 201 aa11.38□□□□□ -0.59
LIG1-220ENST00000601091 GYPCP04921 128 aa11.38□□□□□ -0.59
LIG1-220ENST00000601091 GTF2IP78347 998 aa11.38□□□□□ -0.59
LIG1-220ENST00000601091 KCNB1Q14721 858 aa11.38□□□□□ -0.59
LIG1-220ENST00000601091 PREPLQ4J6C6 727 aaPredicted RBP11.38□□□□□ -0.59
LIG1-220ENST00000601091 RBM12BQ8IXT5 1001 aaKnown RBP11.38□□□□□ -0.59
LIG1-220ENST00000601091 ARFGAP2Q8N6H7 521 aa11.38□□□□□ -0.59
LIG1-220ENST00000601091 PSTPIP2Q9H939 334 aa11.38□□□□□ -0.59
LIG1-220ENST00000601091 GOLGA6L10A0A0M3HER8 536 aa11.37□□□□□ -0.59
LIG1-220ENST00000601091 FAM13AO94988 1023 aa11.37□□□□□ -0.59
LIG1-220ENST00000601091 TRPC1P48995 793 aa11.37□□□□□ -0.59
LIG1-220ENST00000601091 FKBP3Q00688 224 aaKnown RBP11.37□□□□□ -0.59
LIG1-220ENST00000601091 GRM4Q14833 912 aa11.37□□□□□ -0.59
LIG1-220ENST00000601091 SH3RF3Q8TEJ3 882 aaPredicted RBP11.37□□□□□ -0.59
LIG1-220ENST00000601091 NDST4Q9H3R1 872 aa11.37□□□□□ -0.59
LIG1-220ENST00000601091 RIC8AQ9NPQ8 531 aa11.37□□□□□ -0.59
LIG1-220ENST00000601091 BARHL2Q9NY43 387 aa11.37□□□□□ -0.59
LIG1-220ENST00000601091 SRP68Q9UHB9 627 aaKnown RBP11.37□□□□□ -0.59
LIG1-220ENST00000601091 DNM3Q9UQ16 869 aa11.37□□□□□ -0.59
LIG1-220ENST00000601091 KDM3AQ9Y4C1 1321 aa11.37□□□□□ -0.59
LIG1-220ENST00000601091 FANCGO15287 622 aa11.37□□□□□ -0.59
LIG1-220ENST00000601091 EPB41P11171 864 aaKnown RBP11.37□□□□□ -0.59
LIG1-220ENST00000601091 KIAA0753Q2KHM9 967 aa11.37□□□□□ -0.59
LIG1-220ENST00000601091 SBK1Q52WX2 424 aa11.37□□□□□ -0.59
LIG1-220ENST00000601091 CACTIN-AS1Q8N1I8 211 aa11.37□□□□□ -0.59
LIG1-220ENST00000601091 FNBP4Q8N3X1 1017 aaPredicted RBP11.37□□□□□ -0.59
LIG1-220ENST00000601091 CHP1Q99653 195 aa11.37□□□□□ -0.59
LIG1-220ENST00000601091 CCSER1Q9C0I3 900 aa11.37□□□□□ -0.59
LIG1-220ENST00000601091 FAM204AQ9H8W3 233 aa11.37□□□□□ -0.59
LIG1-220ENST00000601091 PANK4Q9NVE7 773 aa11.37□□□□□ -0.59
LIG1-220ENST00000601091 TMCC3Q9ULS5 477 aa11.37□□□□□ -0.59
LIG1-220ENST00000601091 CD44P16070 742 aaKnown RBP11.37□□□□□ -0.59
LIG1-220ENST00000601091 CDK8P49336 464 aa11.37□□□□□ -0.59
LIG1-220ENST00000601091 PAK2Q13177 524 aa11.37□□□□□ -0.59
LIG1-220ENST00000601091 ASPRV1Q53RT3 343 aa11.37□□□□□ -0.59
LIG1-220ENST00000601091 KIRREL3Q8IZU9 778 aa11.37□□□□□ -0.59
LIG1-220ENST00000601091 ADSSL1Q8N142 457 aa11.37□□□□□ -0.59
LIG1-220ENST00000601091 RIN2Q8WYP3 895 aaPredicted RBP11.37□□□□□ -0.59
LIG1-220ENST00000601091 DDX25Q9UHL0 483 aaKnown RBP11.37□□□□□ -0.59
LIG1-220ENST00000601091 CNTNAP5Q8WYK1 1306 aa11.36□□□□□ -0.59
LIG1-220ENST00000601091 FOXP2O15409 715 aa11.36□□□□□ -0.59
LIG1-220ENST00000601091 TXNRD1Q16881 649 aa11.36□□□□□ -0.59
LIG1-220ENST00000601091 TSNAXIP1Q2TAA8 658 aa11.36□□□□□ -0.59
LIG1-220ENST00000601091 C12orf60Q5U649 245 aa11.36□□□□□ -0.59
LIG1-220ENST00000601091 AGAP9Q5VTM2 703 aa11.36□□□□□ -0.59
LIG1-220ENST00000601091 DPP8Q6V1X1 898 aaPredicted RBP11.36□□□□□ -0.59
LIG1-220ENST00000601091 SAMD3Q8N6K7 520 aa11.36□□□□□ -0.59
LIG1-220ENST00000601091 LSM14BQ9BX40 385 aaKnown RBP11.36□□□□□ -0.59
LIG1-220ENST00000601091 TFR2Q9UP52 801 aa11.36□□□□□ -0.59
LIG1-220ENST00000601091 hCG_1984214I3L0E3 225 aa11.36□□□□□ -0.59
LIG1-220ENST00000601091 BUB1O43683 1085 aa11.36□□□□□ -0.59
LIG1-220ENST00000601091 MDM2Q00987 491 aaPredicted RBP11.36□□□□□ -0.59
LIG1-220ENST00000601091 RPS6KA1Q15418 735 aa11.36□□□□□ -0.59
LIG1-220ENST00000601091 TBC1D9BQ66K14 1250 aa11.36□□□□□ -0.59
LIG1-220ENST00000601091 GPBP1Q86WP2 473 aa11.36□□□□□ -0.59
LIG1-220ENST00000601091 ZNF713Q8N859 430 aaPredicted RBP11.36□□□□□ -0.59
LIG1-220ENST00000601091 SLC44A5Q8NCS7 719 aa11.36□□□□□ -0.59
LIG1-220ENST00000601091 RIOK1Q9BRS2 568 aaKnown RBP11.36□□□□□ -0.59
LIG1-220ENST00000601091 CD248Q9HCU0 757 aa11.36□□□□□ -0.59
LIG1-220ENST00000601091 ZNF219Q9P2Y4 722 aaPredicted RBP11.36□□□□□ -0.59
LIG1-220ENST00000601091 CAPN11Q9UMQ6 739 aa11.36□□□□□ -0.59
LIG1-220ENST00000601091 LRRC37A3O60309 1634 aa11.36□□□□□ -0.59
LIG1-220ENST00000601091 ZSCAN9O15535 394 aaPredicted RBP11.36□□□□□ -0.59
LIG1-220ENST00000601091 CALUO43852 315 aaPredicted RBP11.36□□□□□ -0.59
LIG1-220ENST00000601091 HIP1RO75146 1068 aa11.36□□□□□ -0.59
LIG1-220ENST00000601091 EIF4A3P38919 411 aaKnown RBP11.36□□□□□ -0.59
LIG1-220ENST00000601091 RASSF7Q02833 373 aa11.36□□□□□ -0.59
LIG1-220ENST00000601091 TBX2Q13207 712 aaPredicted RBP11.36□□□□□ -0.59
LIG1-220ENST00000601091 CCDC93Q567U6 631 aa11.36□□□□□ -0.59
LIG1-220ENST00000601091 NEK10Q6ZWH5 1172 aa11.36□□□□□ -0.59
LIG1-220ENST00000601091 GSPT2Q8IYD1 628 aaKnown RBP11.36□□□□□ -0.59
LIG1-220ENST00000601091 GABPB2Q8TAK5 448 aaPredicted RBP11.36□□□□□ -0.59
LIG1-220ENST00000601091 COA7Q96BR5 231 aa11.36□□□□□ -0.59
LIG1-220ENST00000601091 CPVLQ9H3G5 476 aa11.36□□□□□ -0.59
LIG1-220ENST00000601091 USP40Q9NVE5 1235 aa11.36□□□□□ -0.59
LIG1-220ENST00000601091 NARFQ9UHQ1 456 aa11.36□□□□□ -0.59
LIG1-220ENST00000601091 KRT13P13646 458 aa11.35□□□□□ -0.59
LIG1-220ENST00000601091 BMP6P22004 513 aa11.35□□□□□ -0.59
LIG1-220ENST00000601091 LRRC41Q15345 812 aa11.35□□□□□ -0.59
LIG1-220ENST00000601091 PKN1Q16512 942 aa11.35□□□□□ -0.59
LIG1-220ENST00000601091 FBXO33Q7Z6M2 555 aa11.35□□□□□ -0.59
LIG1-220ENST00000601091 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.35□□□□□ -0.592e-7■■■■□ 20.8
LIG1-220ENST00000601091 RNF40O75150 1001 aa11.35□□□□□ -0.59
LIG1-220ENST00000601091 RPS6KA4O75676 772 aa11.35□□□□□ -0.59
LIG1-220ENST00000601091 FLOT1O75955 427 aa11.35□□□□□ -0.59
LIG1-220ENST00000601091 SF3A3Q12874 501 aaKnown RBP eCLIP11.35□□□□□ -0.592e-6■■■■□ 21
LIG1-220ENST00000601091 CRYMQ14894 314 aa11.35□□□□□ -0.59
LIG1-220ENST00000601091 LONRF1Q17RB8 773 aa11.35□□□□□ -0.59
LIG1-220ENST00000601091 INTS5Q6P9B9 1019 aaKnown RBP11.35□□□□□ -0.59
LIG1-220ENST00000601091 NDUFAB1O14561 156 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms