RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 PCDHA4Q9UN74 947 aa18.45■□□□□ 0.54
TRIM28-206ENST00000595974 TELO2Q9Y4R8 837 aa18.45■□□□□ 0.54
TRIM28-206ENST00000595974 EMSYQ7Z589 1322 aa18.45■□□□□ 0.54
TRIM28-206ENST00000595974 IGLV3-22A0A075B6J6 115 aa18.44■□□□□ 0.54
TRIM28-206ENST00000595974 GSTTP1A0A1W2PQM5 241 aa18.44■□□□□ 0.54
TRIM28-206ENST00000595974 C17orf102A2RUQ5 167 aa18.44■□□□□ 0.54
TRIM28-206ENST00000595974 FAM86B1E9PN63 330 aa18.44■□□□□ 0.54
TRIM28-206ENST00000595974 FAM86B2P0C5J1 330 aa18.44■□□□□ 0.54
TRIM28-206ENST00000595974 XBP1P17861 261 aa18.44■□□□□ 0.54
TRIM28-206ENST00000595974 SMAD3P84022 425 aaKnown RBP18.44■□□□□ 0.54
TRIM28-206ENST00000595974 ME3Q16798 604 aa18.44■□□□□ 0.54
TRIM28-206ENST00000595974 RASIP1Q5U651 963 aa18.44■□□□□ 0.54
TRIM28-206ENST00000595974 DHX38Q92620 1227 aaKnown RBP18.44■□□□□ 0.54
TRIM28-206ENST00000595974 AIFM3Q96NN9 605 aa18.44■□□□□ 0.54
TRIM28-206ENST00000595974 GBF1Q92538 1859 aa18.43■□□□□ 0.54
TRIM28-206ENST00000595974 PARNO95453 639 aaKnown RBP18.43■□□□□ 0.54
TRIM28-206ENST00000595974 LARGE1O95461 756 aa18.43■□□□□ 0.54
TRIM28-206ENST00000595974 FGBP02675 491 aa18.43■□□□□ 0.54
TRIM28-206ENST00000595974 IQCF3P0C7M6 154 aa18.43■□□□□ 0.54
TRIM28-206ENST00000595974 GNAT1P11488 350 aa18.43■□□□□ 0.54
TRIM28-206ENST00000595974 CIITAP33076 1130 aa18.43■□□□□ 0.54
TRIM28-206ENST00000595974 ITGB3BPQ13352 177 aaPredicted RBP18.43■□□□□ 0.54
TRIM28-206ENST00000595974 SERINC5Q86VE9 423 aa18.43■□□□□ 0.54
TRIM28-206ENST00000595974 BLIDQ8IZY5 108 aa18.43■□□□□ 0.54
TRIM28-206ENST00000595974 HERVK_113Q902F9 699 aa18.43■□□□□ 0.54
TRIM28-206ENST00000595974 WASF1Q92558 559 aa18.43■□□□□ 0.54
TRIM28-206ENST00000595974 SMARCAD1Q9H4L7 1026 aa18.43■□□□□ 0.54
TRIM28-206ENST00000595974 ERAP1Q9NZ08 941 aa18.43■□□□□ 0.54
TRIM28-206ENST00000595974 LGR5O75473 907 aa18.42■□□□□ 0.54
TRIM28-206ENST00000595974 CTDNEP1O95476 244 aa18.42■□□□□ 0.54
TRIM28-206ENST00000595974 SELPP16109 830 aa18.42■□□□□ 0.54
TRIM28-206ENST00000595974 ACTR2P61160 394 aa18.42■□□□□ 0.54
TRIM28-206ENST00000595974 ZNF200P98182 395 aaPredicted RBP18.42■□□□□ 0.54
TRIM28-206ENST00000595974 HIC1Q14526 733 aa18.42■□□□□ 0.54
TRIM28-206ENST00000595974 NPY5RQ15761 445 aa18.42■□□□□ 0.54
TRIM28-206ENST00000595974 LRRC8DQ7L1W4 858 aa18.42■□□□□ 0.54
TRIM28-206ENST00000595974 GLG1Q92896 1179 aa18.42■□□□□ 0.54
TRIM28-206ENST00000595974 ATP6V0A1Q93050 837 aa18.42■□□□□ 0.54
TRIM28-206ENST00000595974 RNPEPQ9H4A4 650 aa18.42■□□□□ 0.54
TRIM28-206ENST00000595974 ORC3Q9UBD5 711 aaPredicted RBP18.42■□□□□ 0.54
TRIM28-206ENST00000595974 M0R2N6 131 aa18.41■□□□□ 0.54
TRIM28-206ENST00000595974 IPO5O00410 1097 aaKnown RBP18.41■□□□□ 0.54
TRIM28-206ENST00000595974 CKBP12277 381 aa18.41■□□□□ 0.54
TRIM28-206ENST00000595974 RBM25P49756 843 aaKnown RBP18.41■□□□□ 0.54
TRIM28-206ENST00000595974 USP11P51784 963 aa18.41■□□□□ 0.54
TRIM28-206ENST00000595974 TRIM71Q2Q1W2 868 aaKnown RBP18.41■□□□□ 0.54
TRIM28-206ENST00000595974 FAM109BQ6ICB4 259 aaPredicted RBP18.41■□□□□ 0.54
TRIM28-206ENST00000595974 NECAB1Q8N987 351 aa18.41■□□□□ 0.54
TRIM28-206ENST00000595974 VWCEQ96DN2 955 aa18.41■□□□□ 0.54
TRIM28-206ENST00000595974 PHF20Q9BVI0 1012 aa18.41■□□□□ 0.54
TRIM28-206ENST00000595974 AZI2Q9H6S1 392 aa18.41■□□□□ 0.54
TRIM28-206ENST00000595974 NRCAMQ92823 1304 aa18.41■□□□□ 0.54
TRIM28-206ENST00000595974 HSFX4A0A1B0GTS1 333 aaPredicted RBP18.4■□□□□ 0.54
TRIM28-206ENST00000595974 HSFX3A0A1B0GWH4 333 aaPredicted RBP18.4■□□□□ 0.54
TRIM28-206ENST00000595974 ACTN1P12814 892 aa18.4■□□□□ 0.54
TRIM28-206ENST00000595974 PRR16Q569H4 304 aa18.4■□□□□ 0.54
TRIM28-206ENST00000595974 OTOP2Q7RTS6 562 aa18.4■□□□□ 0.54
TRIM28-206ENST00000595974 KRT25Q7Z3Z0 450 aa18.4■□□□□ 0.54
TRIM28-206ENST00000595974 DEFB128Q7Z7B8 93 aa18.4■□□□□ 0.54
TRIM28-206ENST00000595974 NSUN7Q8NE18 718 aaKnown RBP18.4■□□□□ 0.54
TRIM28-206ENST00000595974 TBCKQ8TEA7 893 aa18.4■□□□□ 0.54
TRIM28-206ENST00000595974 LMBR1Q8WVP7 490 aa18.4■□□□□ 0.54
TRIM28-206ENST00000595974 WNT8BQ93098 351 aa18.4■□□□□ 0.54
TRIM28-206ENST00000595974 PCYT2Q99447 389 aa18.4■□□□□ 0.54
TRIM28-206ENST00000595974 ZNF577Q9BSK1 485 aa18.4■□□□□ 0.54
TRIM28-206ENST00000595974 TBC1D22BQ9NU19 505 aa18.4■□□□□ 0.54
TRIM28-206ENST00000595974 SETD4Q9NVD3 440 aa18.4■□□□□ 0.54
TRIM28-206ENST00000595974 TCEAL9Q9UHQ7 104 aa18.4■□□□□ 0.54
TRIM28-206ENST00000595974 DHX15O43143 795 aaKnown RBP18.39■□□□□ 0.53
TRIM28-206ENST00000595974 TREHO43280 583 aa18.39■□□□□ 0.53
TRIM28-206ENST00000595974 CAND2O75155 1236 aa18.39■□□□□ 0.53
TRIM28-206ENST00000595974 ATG7O95352 703 aa18.39■□□□□ 0.53
TRIM28-206ENST00000595974 MARK3P27448 753 aa18.39■□□□□ 0.53
TRIM28-206ENST00000595974 ADAM17P78536 824 aa18.39■□□□□ 0.53
TRIM28-206ENST00000595974 PPFIA1Q13136 1202 aa18.39■□□□□ 0.53
TRIM28-206ENST00000595974 NONOQ15233 471 aaKnown RBP eCLIP18.39■□□□□ 0.53
TRIM28-206ENST00000595974 PLPPR4Q7Z2D5 763 aa18.39■□□□□ 0.53
TRIM28-206ENST00000595974 DEFB123Q8N688 67 aa18.39■□□□□ 0.53
TRIM28-206ENST00000595974 LENG9Q96B70 501 aa18.39■□□□□ 0.53
TRIM28-206ENST00000595974 KIF2CQ99661 725 aa18.39■□□□□ 0.53
TRIM28-206ENST00000595974 UPF2Q9HAU5 1272 aaKnown RBP18.39■□□□□ 0.53
TRIM28-206ENST00000595974 KCNJ14Q9UNX9 436 aa18.39■□□□□ 0.53
TRIM28-206ENST00000595974 LIMCH1Q9UPQ0 1083 aa18.39■□□□□ 0.53
TRIM28-206ENST00000595974 MYO9BQ13459 2157 aa18.39■□□□□ 0.53
TRIM28-206ENST00000595974 MICAL3Q7RTP6 2002 aa18.39■□□□□ 0.53
TRIM28-206ENST00000595974 TMEM265A0A087WTH1 108 aa18.38■□□□□ 0.53
TRIM28-206ENST00000595974 DDX39AO00148 427 aaKnown RBP18.38■□□□□ 0.53
TRIM28-206ENST00000595974 CCNE2O96020 404 aa18.38■□□□□ 0.53
TRIM28-206ENST00000595974 SLC26A2P50443 739 aa18.38■□□□□ 0.53
TRIM28-206ENST00000595974 ZNF618Q5T7W0 954 aa18.38■□□□□ 0.53
TRIM28-206ENST00000595974 ZNF697Q5TEC3 545 aa18.38■□□□□ 0.53
TRIM28-206ENST00000595974 ZNF746Q6NUN9 644 aaPredicted RBP18.38■□□□□ 0.53
TRIM28-206ENST00000595974 MOXD1Q6UVY6 613 aa18.38■□□□□ 0.53
TRIM28-206ENST00000595974 TNPO1Q92973 898 aaKnown RBP18.38■□□□□ 0.53
TRIM28-206ENST00000595974 FTOQ9C0B1 505 aaKnown RBP eCLIP18.38■□□□□ 0.53
TRIM28-206ENST00000595974 CXXC1Q9P0U4 656 aaPredicted RBP18.38■□□□□ 0.53
TRIM28-206ENST00000595974 SIP14410 1827 aa18.37■□□□□ 0.53
TRIM28-206ENST00000595974 PTPRSQ13332 1948 aa18.37■□□□□ 0.53
TRIM28-206ENST00000595974 IGKV6D-21A0A0A0MT36 114 aa18.37■□□□□ 0.53
TRIM28-206ENST00000595974 ZBBXA8MT70 800 aa18.37■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 139.2 ms