RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 GTPBP6O43824 516 aaPredicted RBP34.24■■■■□ 3.07
CTCF-203ENST00000566078 FBXO16Q8IX29 292 aaPredicted RBP34.24■■■■□ 3.07
CTCF-203ENST00000566078 DIS3Q9Y2L1 958 aaKnown RBP34.24■■■■□ 3.07
CTCF-203ENST00000566078 SAMM50Q9Y512 469 aa34.24■■■■□ 3.07
CTCF-203ENST00000566078 VEGFBP49765 207 aa34.23■■■■□ 3.07
CTCF-203ENST00000566078 DPYDQ12882 1025 aa34.23■■■■□ 3.07
CTCF-203ENST00000566078 SMARCE1Q969G3 411 aa34.23■■■■□ 3.07
CTCF-203ENST00000566078 MAML3Q96JK9 1138 aa34.23■■■■□ 3.07
CTCF-203ENST00000566078 HSD17B14Q9BPX1 270 aa34.23■■■■□ 3.07
CTCF-203ENST00000566078 BLZF1Q9H2G9 400 aa34.23■■■■□ 3.07
CTCF-203ENST00000566078 JPH1Q9HDC5 661 aaPredicted RBP34.23■■■■□ 3.07
CTCF-203ENST00000566078 SLC5A4Q9NY91 659 aa34.23■■■■□ 3.07
CTCF-203ENST00000566078 A0A087WWV3 80 aa34.22■■■■□ 3.07
CTCF-203ENST00000566078 SMC2O95347 1197 aa34.22■■■■□ 3.07
CTCF-203ENST00000566078 CCNE2O96020 404 aa34.22■■■■□ 3.07
CTCF-203ENST00000566078 JAK3P52333 1124 aa34.22■■■■□ 3.07
CTCF-203ENST00000566078 SP2Q02086 613 aa34.22■■■■□ 3.07
CTCF-203ENST00000566078 CTTNQ14247 550 aaKnown RBP34.22■■■■□ 3.07
CTCF-203ENST00000566078 MCM6Q14566 821 aa34.22■■■■□ 3.07
CTCF-203ENST00000566078 NEK9Q8TD19 979 aa34.22■■■■□ 3.07
CTCF-203ENST00000566078 BIN1O00499 593 aa34.22■■■■□ 3.07
CTCF-203ENST00000566078 UBA1P22314 1058 aaKnown RBP34.22■■■■□ 3.07
CTCF-203ENST00000566078 MAP2K5Q13163 448 aa34.22■■■■□ 3.07
CTCF-203ENST00000566078 CUL4BQ13620 913 aa34.22■■■■□ 3.07
CTCF-203ENST00000566078 DHX8Q14562 1220 aaKnown RBP34.22■■■■□ 3.07
CTCF-203ENST00000566078 STX1AQ16623 288 aa34.22■■■■□ 3.07
CTCF-203ENST00000566078 ZNF746Q6NUN9 644 aaPredicted RBP34.22■■■■□ 3.07
CTCF-203ENST00000566078 SV2BQ7L1I2 683 aa34.22■■■■□ 3.07
CTCF-203ENST00000566078 BCAS3Q9H6U6 928 aa34.22■■■■□ 3.07
CTCF-203ENST00000566078 WDR64B1ANS9 1081 aa34.21■■■■□ 3.07
CTCF-203ENST00000566078 E9PMD0 336 aa34.21■■■■□ 3.07
CTCF-203ENST00000566078 TNPO2O14787 897 aaKnown RBP34.21■■■■□ 3.07
CTCF-203ENST00000566078 SORBS3O60504 671 aa34.21■■■■□ 3.07
CTCF-203ENST00000566078 SLITRK3O94933 977 aa34.21■■■■□ 3.07
CTCF-203ENST00000566078 SFNP31947 248 aa34.21■■■■□ 3.07
CTCF-203ENST00000566078 TPH2Q8IWU9 490 aa34.21■■■■□ 3.07
CTCF-203ENST00000566078 NPLOC4Q8TAT6 608 aa34.21■■■■□ 3.07
CTCF-203ENST00000566078 SENP7Q9BQF6 1050 aa34.21■■■■□ 3.07
CTCF-203ENST00000566078 SLC9A2Q9UBY0 812 aa34.21■■■■□ 3.07
CTCF-203ENST00000566078 NT5DC1Q5TFE4 455 aa34.2■■■■□ 3.07
CTCF-203ENST00000566078 BANK1Q8NDB2 785 aa34.2■■■■□ 3.07
CTCF-203ENST00000566078 ARID2Q68CP9 1835 aa34.2■■■■□ 3.07
CTCF-203ENST00000566078 MAP2K2P36507 400 aa34.19■■■■□ 3.06
CTCF-203ENST00000566078 MAMDC4Q6UXC1 1216 aa34.19■■■■□ 3.06
CTCF-203ENST00000566078 LXNQ9BS40 222 aa34.19■■■■□ 3.06
CTCF-203ENST00000566078 GOLGA6L3A6NEY3 463 aa34.19■■■■□ 3.06
CTCF-203ENST00000566078 MYL1P05976 194 aa34.19■■■■□ 3.06
CTCF-203ENST00000566078 TGFB3P10600 412 aa34.19■■■■□ 3.06
CTCF-203ENST00000566078 AMPD3Q01432 767 aa34.19■■■■□ 3.06
CTCF-203ENST00000566078 KCNV1Q6PIU1 500 aa34.19■■■■□ 3.06
CTCF-203ENST00000566078 CYFIP1Q7L576 1253 aa34.19■■■■□ 3.06
CTCF-203ENST00000566078 GIMAP8Q8ND71 665 aaPredicted RBP34.19■■■■□ 3.06
CTCF-203ENST00000566078 RDM1Q8NG50 284 aa34.19■■■■□ 3.06
CTCF-203ENST00000566078 SPATA20Q8TB22 786 aa34.19■■■■□ 3.06
CTCF-203ENST00000566078 CDKN2AIPQ9NXV6 580 aaPredicted RBP34.19■■■■□ 3.06
CTCF-203ENST00000566078 MAN1B1Q9UKM7 699 aa34.19■■■■□ 3.06
CTCF-203ENST00000566078 TBC1D8O95759 1140 aa34.18■■■■□ 3.06
CTCF-203ENST00000566078 MUTP22033 750 aa34.18■■■■□ 3.06
CTCF-203ENST00000566078 SARSP49591 514 aaKnown RBP34.18■■■■□ 3.06
CTCF-203ENST00000566078 PSMC6P62333 389 aa34.18■■■■□ 3.06
CTCF-203ENST00000566078 SP4Q02446 784 aa34.18■■■■□ 3.06
CTCF-203ENST00000566078 ANO6Q4KMQ2 910 aa34.18■■■■□ 3.06
CTCF-203ENST00000566078 ISM2Q6H9L7 571 aa34.18■■■■□ 3.06
CTCF-203ENST00000566078 SMAP1Q8IYB5 467 aaPredicted RBP34.18■■■■□ 3.06
CTCF-203ENST00000566078 VTA1Q9NP79 307 aa34.18■■■■□ 3.06
CTCF-203ENST00000566078 ANO10Q9NW15 660 aa34.18■■■■□ 3.06
CTCF-203ENST00000566078 DNM3Q9UQ16 869 aa34.18■■■■□ 3.06
CTCF-203ENST00000566078 ARIH2O95376 493 aa34.17■■■■□ 3.06
CTCF-203ENST00000566078 P4HBP07237 508 aaKnown RBP34.17■■■■□ 3.06
CTCF-203ENST00000566078 PLA2G4BP0C869 781 aa34.17■■■■□ 3.06
CTCF-203ENST00000566078 CTGFP29279 349 aa34.17■■■■□ 3.06
CTCF-203ENST00000566078 NLRP12P59046 1061 aa34.17■■■■□ 3.06
CTCF-203ENST00000566078 NEDD9Q14511 834 aa34.17■■■■□ 3.06
CTCF-203ENST00000566078 KCTD17Q8N5Z5 321 aa34.17■■■■□ 3.06
CTCF-203ENST00000566078 SOCS4Q8WXH5 440 aa34.17■■■■□ 3.06
CTCF-203ENST00000566078 TINF2Q9BSI4 451 aa34.17■■■■□ 3.06
CTCF-203ENST00000566078 CASP8AP2Q9UKL3 1982 aa34.17■■■■□ 3.06
CTCF-203ENST00000566078 SYNGAP1Q96PV0 1343 aa34.16■■■■□ 3.06
CTCF-203ENST00000566078 FSD2A1L4K1 749 aa34.16■■■■□ 3.06
CTCF-203ENST00000566078 SSBP05455 408 aaKnown RBP eCLIP34.16■■■■□ 3.06
CTCF-203ENST00000566078 LY6KQ17RY6 165 aa34.16■■■■□ 3.06
CTCF-203ENST00000566078 USP6NLQ92738 828 aa34.16■■■■□ 3.06
CTCF-203ENST00000566078 C7orf25Q9BPX7 421 aa34.16■■■■□ 3.06
CTCF-203ENST00000566078 WRAP73Q9P2S5 460 aaPredicted RBP34.16■■■■□ 3.06
CTCF-203ENST00000566078 DDX41Q9UJV9 622 aaKnown RBP34.16■■■■□ 3.06
CTCF-203ENST00000566078 RGS2P41220 211 aa34.15■■■■□ 3.06
CTCF-203ENST00000566078 FCGRTP55899 365 aa34.15■■■■□ 3.06
CTCF-203ENST00000566078 ACTR2P61160 394 aa34.15■■■■□ 3.06
CTCF-203ENST00000566078 GSDMAQ96QA5 445 aa34.15■■■■□ 3.06
CTCF-203ENST00000566078 TRIM9Q9C026 710 aa34.15■■■■□ 3.06
CTCF-203ENST00000566078 DNAJC25Q9H1X3 360 aa34.15■■■■□ 3.06
CTCF-203ENST00000566078 PCDHA10Q9Y5I2 948 aa34.15■■■■□ 3.06
CTCF-203ENST00000566078 MYH11P35749 1972 aa34.15■■■■□ 3.06
CTCF-203ENST00000566078 GGPS1O95749 300 aa34.15■■■■□ 3.06
CTCF-203ENST00000566078 HOXC6P09630 235 aa34.15■■■■□ 3.06
CTCF-203ENST00000566078 LACTBP83111 547 aaPredicted RBP34.15■■■■□ 3.06
CTCF-203ENST00000566078 SCFD2Q8WU76 684 aa34.15■■■■□ 3.06
CTCF-203ENST00000566078 LRRC27Q9C0I9 530 aa34.15■■■■□ 3.06
CTCF-203ENST00000566078 RBSNQ9H1K0 784 aa34.15■■■■□ 3.06
CTCF-203ENST00000566078 PDGFCQ9NRA1 345 aa34.15■■■■□ 3.06
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms