RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 SIP14410 1827 aa10.49□□□□□ -0.73
VPS35-206ENST00000565228 TRIOBPQ9H2D6 2365 aa10.48□□□□□ -0.73
VPS35-206ENST00000565228 LAMA2P24043 3122 aaKnown RBP10.48□□□□□ -0.73
VPS35-206ENST00000565228 IGKV6D-21A0A0A0MT36 114 aa10.48□□□□□ -0.73
VPS35-206ENST00000565228 EML1O00423 815 aa10.48□□□□□ -0.73
VPS35-206ENST00000565228 LGR5O75473 907 aa10.48□□□□□ -0.73
VPS35-206ENST00000565228 STBD1O95210 358 aa10.48□□□□□ -0.73
VPS35-206ENST00000565228 CYP2C9P11712 490 aa10.48□□□□□ -0.73
VPS35-206ENST00000565228 KRT2P35908 639 aa10.48□□□□□ -0.73
VPS35-206ENST00000565228 TCF7P36402 384 aaPredicted RBP10.48□□□□□ -0.73
VPS35-206ENST00000565228 USP11P51784 963 aa10.48□□□□□ -0.73
VPS35-206ENST00000565228 ACTR2P61160 394 aa10.48□□□□□ -0.73
VPS35-206ENST00000565228 NEDD9Q14511 834 aa10.48□□□□□ -0.73
VPS35-206ENST00000565228 MFSD10Q14728 455 aa10.48□□□□□ -0.73
VPS35-206ENST00000565228 NONOQ15233 471 aaKnown RBP eCLIP10.48□□□□□ -0.73
VPS35-206ENST00000565228 UGCGQ16739 394 aa10.48□□□□□ -0.73
VPS35-206ENST00000565228 TCTN1Q2MV58 587 aa10.48□□□□□ -0.73
VPS35-206ENST00000565228 Q4G0T1 1027 aa10.48□□□□□ -0.73
VPS35-206ENST00000565228 UTP14CQ5TAP6 766 aaKnown RBP10.48□□□□□ -0.73
VPS35-206ENST00000565228 GALNT17Q6IS24 598 aa10.48□□□□□ -0.73
VPS35-206ENST00000565228 KCNV1Q6PIU1 500 aa10.48□□□□□ -0.73
VPS35-206ENST00000565228 TRAF7Q6Q0C0 670 aa10.48□□□□□ -0.73
VPS35-206ENST00000565228 ABHD15Q6UXT9 468 aa10.48□□□□□ -0.73
VPS35-206ENST00000565228 KRT25Q7Z3Z0 450 aa10.48□□□□□ -0.73
VPS35-206ENST00000565228 CCDC60Q8IWA6 550 aaPredicted RBP10.48□□□□□ -0.73
VPS35-206ENST00000565228 BICD2Q8TD16 824 aa10.48□□□□□ -0.73
VPS35-206ENST00000565228 SLC5A5Q92911 643 aa10.48□□□□□ -0.73
VPS35-206ENST00000565228 SNX21Q969T3 373 aa10.48□□□□□ -0.73
VPS35-206ENST00000565228 C8orf76Q96K31 380 aa10.48□□□□□ -0.73
VPS35-206ENST00000565228 WNT8AQ9H1J5 351 aa10.48□□□□□ -0.73
VPS35-206ENST00000565228 KCNMB3Q9NPA1 279 aa10.48□□□□□ -0.73
VPS35-206ENST00000565228 POLR3EQ9NVU0 708 aa10.48□□□□□ -0.73
VPS35-206ENST00000565228 NFASCO94856 1347 aa10.48□□□□□ -0.73
VPS35-206ENST00000565228 MYH9P35579 1960 aaKnown RBP10.48□□□□□ -0.73
VPS35-206ENST00000565228 KAT6AQ92794 2004 aa10.47□□□□□ -0.73
VPS35-206ENST00000565228 EVPLQ92817 2033 aa10.47□□□□□ -0.73
VPS35-206ENST00000565228 IPO5O00410 1097 aaKnown RBP10.47□□□□□ -0.73
VPS35-206ENST00000565228 KIAA0355O15063 1070 aa10.47□□□□□ -0.73
VPS35-206ENST00000565228 MAFGO15525 162 aa10.47□□□□□ -0.73
VPS35-206ENST00000565228 PPFIA4O75335 1185 aa10.47□□□□□ -0.73
VPS35-206ENST00000565228 PSMD10O75832 226 aa10.47□□□□□ -0.73
VPS35-206ENST00000565228 MAGEA10P43363 369 aaPredicted RBP10.47□□□□□ -0.73
VPS35-206ENST00000565228 CHMP4BP1P59074 171 aa10.47□□□□□ -0.73
VPS35-206ENST00000565228 ADAM17P78536 824 aa10.47□□□□□ -0.73
VPS35-206ENST00000565228 SPIRE1Q08AE8 756 aa10.47□□□□□ -0.73
VPS35-206ENST00000565228 DGKDQ16760 1214 aa10.47□□□□□ -0.73
VPS35-206ENST00000565228 KIAA0753Q2KHM9 967 aa10.47□□□□□ -0.73
VPS35-206ENST00000565228 TRIM71Q2Q1W2 868 aaKnown RBP10.47□□□□□ -0.73
VPS35-206ENST00000565228 LETM2Q2VYF4 491 aa10.47□□□□□ -0.73
VPS35-206ENST00000565228 C16orf59Q7L2K0 433 aa10.47□□□□□ -0.73
VPS35-206ENST00000565228 FAM177A1Q8N128 213 aaPredicted RBP10.47□□□□□ -0.73
VPS35-206ENST00000565228 C4orf32Q8N8J7 132 aa10.47□□□□□ -0.73
VPS35-206ENST00000565228 WASF1Q92558 559 aa10.47□□□□□ -0.73
VPS35-206ENST00000565228 VTI1AQ96AJ9 217 aa10.47□□□□□ -0.73
VPS35-206ENST00000565228 TOX2Q96NM4 488 aa10.47□□□□□ -0.73
VPS35-206ENST00000565228 GDF15Q99988 308 aa10.47□□□□□ -0.73
VPS35-206ENST00000565228 ZNF577Q9BSK1 485 aa10.47□□□□□ -0.73
VPS35-206ENST00000565228 UNC45AQ9H3U1 944 aa10.47□□□□□ -0.73
VPS35-206ENST00000565228 JPH1Q9HDC5 661 aaPredicted RBP10.47□□□□□ -0.73
VPS35-206ENST00000565228 SLC9A2Q9UBY0 812 aa10.47□□□□□ -0.73
VPS35-206ENST00000565228 VAV3Q9UKW4 847 aa10.47□□□□□ -0.73
VPS35-206ENST00000565228 COLQQ9Y215 455 aaPredicted RBP10.47□□□□□ -0.73
VPS35-206ENST00000565228 CCDC194A0A1B0GVG4 234 aa10.46□□□□□ -0.73
VPS35-206ENST00000565228 ZBTB42B2RXF5 422 aa10.46□□□□□ -0.73
VPS35-206ENST00000565228 K7ELQ4 463 aaPredicted RBP10.46□□□□□ -0.73
VPS35-206ENST00000565228 ZNF862O60290 1169 aa10.46□□□□□ -0.73
VPS35-206ENST00000565228 CABYRO75952 493 aa10.46□□□□□ -0.73
VPS35-206ENST00000565228 CLTBP09497 229 aa10.46□□□□□ -0.73
VPS35-206ENST00000565228 U2AF2P26368 475 aaKnown RBP eCLIP10.46□□□□□ -0.73
VPS35-206ENST00000565228 MARK3P27448 753 aa10.46□□□□□ -0.73
VPS35-206ENST00000565228 CYP2C18P33260 490 aa10.46□□□□□ -0.73
VPS35-206ENST00000565228 ZNF76P36508 570 aa10.46□□□□□ -0.73
VPS35-206ENST00000565228 MCM2P49736 904 aa10.46□□□□□ -0.73
VPS35-206ENST00000565228 HMGN5P82970 282 aaKnown RBP10.46□□□□□ -0.73
VPS35-206ENST00000565228 MDM2Q00987 491 aaPredicted RBP10.46□□□□□ -0.73
VPS35-206ENST00000565228 MARCH8Q5T0T0 291 aa10.46□□□□□ -0.73
VPS35-206ENST00000565228 NFRKBQ6P4R8 1299 aa10.46□□□□□ -0.73
VPS35-206ENST00000565228 MOXD1Q6UVY6 613 aa10.46□□□□□ -0.73
VPS35-206ENST00000565228 NEK8Q86SG6 692 aa10.46□□□□□ -0.73
VPS35-206ENST00000565228 SESTD1Q86VW0 696 aa10.46□□□□□ -0.73
VPS35-206ENST00000565228 TRAPPC12Q8WVT3 735 aa10.46□□□□□ -0.73
VPS35-206ENST00000565228 SEPT1Q8WYJ6 367 aa10.46□□□□□ -0.73
VPS35-206ENST00000565228 BADQ92934 168 aa10.46□□□□□ -0.73
VPS35-206ENST00000565228 NOC4LQ9BVI4 516 aaKnown RBP10.46□□□□□ -0.73
VPS35-206ENST00000565228 EHMT1Q9H9B1 1298 aa10.46□□□□□ -0.73
VPS35-206ENST00000565228 PRDM5Q9NQX1 630 aaPredicted RBP10.46□□□□□ -0.73
VPS35-206ENST00000565228 WRAP73Q9P2S5 460 aaPredicted RBP10.46□□□□□ -0.73
VPS35-206ENST00000565228 DDX25Q9UHL0 483 aaKnown RBP10.46□□□□□ -0.73
VPS35-206ENST00000565228 GTF2IRD1Q9UHL9 959 aa10.46□□□□□ -0.73
VPS35-206ENST00000565228 LOXHD1Q8IVV2 1947 aa10.46□□□□□ -0.74
VPS35-206ENST00000565228 PTPRSQ13332 1948 aa10.45□□□□□ -0.74
VPS35-206ENST00000565228 TANC1Q9C0D5 1861 aa10.45□□□□□ -0.74
VPS35-206ENST00000565228 TMEM150BA6NC51 233 aa10.45□□□□□ -0.74
VPS35-206ENST00000565228 H3BRB1 525 aa10.45□□□□□ -0.74
VPS35-206ENST00000565228 TREHO43280 583 aa10.45□□□□□ -0.74
VPS35-206ENST00000565228 ZEB2O60315 1214 aa10.45□□□□□ -0.74
VPS35-206ENST00000565228 CCNT1O60563 726 aaKnown RBP10.45□□□□□ -0.74
VPS35-206ENST00000565228 SUPT20HL2P0C7V6 817 aa10.45□□□□□ -0.74
VPS35-206ENST00000565228 ATXN8OSP0DMR3 200 aa10.45□□□□□ -0.74
VPS35-206ENST00000565228 SMIM10L2AP0DMW4 78 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms