RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 CREBRFQ8IUR6 639 aa18.72■□□□□ 0.59
LDLR-206ENST00000557958 DNAJC19Q96DA6 116 aa18.72■□□□□ 0.59
LDLR-206ENST00000557958 RIT2Q99578 217 aa18.72■□□□□ 0.59
LDLR-206ENST00000557958 EIF2AK1Q9BQI3 630 aaKnown RBP18.72■□□□□ 0.59
LDLR-206ENST00000557958 MXRA8Q9BRK3 442 aa18.72■□□□□ 0.59
LDLR-206ENST00000557958 ASCC2Q9H1I8 757 aaPredicted RBP18.72■□□□□ 0.59
LDLR-206ENST00000557958 CCL15-CCL14A0A0B4J2E2 113 aa18.71■□□□□ 0.59
LDLR-206ENST00000557958 COBLO75128 1261 aa18.71■□□□□ 0.59
LDLR-206ENST00000557958 OSBPP22059 807 aa18.71■□□□□ 0.59
LDLR-206ENST00000557958 ZNF157P51786 506 aaPredicted RBP18.71■□□□□ 0.59
LDLR-206ENST00000557958 PMS1P54277 932 aaKnown RBP18.71■□□□□ 0.59
LDLR-206ENST00000557958 UBXN2AP68543 259 aa18.71■□□□□ 0.59
LDLR-206ENST00000557958 CCL15Q16663 113 aa18.71■□□□□ 0.59
LDLR-206ENST00000557958 FAM26FQ5R3K3 315 aa18.71■□□□□ 0.59
LDLR-206ENST00000557958 CENPPQ6IPU0 288 aa18.71■□□□□ 0.59
LDLR-206ENST00000557958 NSMFQ6X4W1 530 aa18.71■□□□□ 0.59
LDLR-206ENST00000557958 OTOP1Q7RTM1 612 aa18.71■□□□□ 0.59
LDLR-206ENST00000557958 TEKT3Q9BXF9 490 aa18.71■□□□□ 0.59
LDLR-206ENST00000557958 MYPNQ86TC9 1320 aa18.71■□□□□ 0.59
LDLR-206ENST00000557958 AKR1B15C9JRZ8 316 aaPredicted RBP18.71■□□□□ 0.59
LDLR-206ENST00000557958 KIF3CO14782 793 aa18.71■□□□□ 0.59
LDLR-206ENST00000557958 SPATA31C1P0DKV0 1188 aa18.71■□□□□ 0.59
LDLR-206ENST00000557958 CETPP11597 493 aa18.71■□□□□ 0.59
LDLR-206ENST00000557958 CYP11B2P19099 503 aa18.71■□□□□ 0.59
LDLR-206ENST00000557958 PBX1P40424 430 aa18.71■□□□□ 0.59
LDLR-206ENST00000557958 GTF2A2P52657 109 aa18.71■□□□□ 0.59
LDLR-206ENST00000557958 SLC12A3P55017 1021 aa18.71■□□□□ 0.59
LDLR-206ENST00000557958 PABPC4Q13310 644 aaKnown RBP eCLIP18.71■□□□□ 0.59
LDLR-206ENST00000557958 PCNX4Q63HM2 1172 aa18.71■□□□□ 0.59
LDLR-206ENST00000557958 CNGA4Q8IV77 575 aa18.71■□□□□ 0.59
LDLR-206ENST00000557958 MYOCDQ8IZQ8 938 aa18.71■□□□□ 0.59
LDLR-206ENST00000557958 SYT2Q8N9I0 419 aaPredicted RBP18.71■□□□□ 0.59
LDLR-206ENST00000557958 MAF1Q9H063 256 aa18.71■□□□□ 0.59
LDLR-206ENST00000557958 RNF146Q9NTX7 359 aa18.71■□□□□ 0.59
LDLR-206ENST00000557958 TAB2Q9NYJ8 693 aa18.71■□□□□ 0.59
LDLR-206ENST00000557958 ADAMTS5Q9UNA0 930 aa18.71■□□□□ 0.59
LDLR-206ENST00000557958 SMCHD1A6NHR9 2005 aa18.71■□□□□ 0.59
LDLR-206ENST00000557958 IPO5O00410 1097 aaKnown RBP18.7■□□□□ 0.58
LDLR-206ENST00000557958 ARHGAP6O43182 974 aa18.7■□□□□ 0.58
LDLR-206ENST00000557958 TEX33O43247 280 aa18.7■□□□□ 0.58
LDLR-206ENST00000557958 STX10O60499 249 aa18.7■□□□□ 0.58
LDLR-206ENST00000557958 MOGSQ13724 837 aa18.7■□□□□ 0.58
LDLR-206ENST00000557958 SPRYD7Q5W111 196 aa18.7■□□□□ 0.58
LDLR-206ENST00000557958 ANKRD40Q6AI12 368 aa18.7■□□□□ 0.58
LDLR-206ENST00000557958 GPAT2Q6NUI2 795 aa18.7■□□□□ 0.58
LDLR-206ENST00000557958 REPS2Q8NFH8 660 aa18.7■□□□□ 0.58
LDLR-206ENST00000557958 NEK9Q8TD19 979 aa18.7■□□□□ 0.58
LDLR-206ENST00000557958 PRIMPOLQ96LW4 560 aa18.7■□□□□ 0.58
LDLR-206ENST00000557958 DUSP9Q99956 384 aaKnown RBP18.7■□□□□ 0.58
LDLR-206ENST00000557958 VPS16Q9H269 839 aa18.7■□□□□ 0.58
LDLR-206ENST00000557958 TMX1Q9H3N1 280 aa18.7■□□□□ 0.58
LDLR-206ENST00000557958 R3HCC1Q9Y3T6 440 aaKnown RBP18.7■□□□□ 0.58
LDLR-206ENST00000557958 FRMPD4Q14CM0 1322 aa18.69■□□□□ 0.58
LDLR-206ENST00000557958 LGALS16A8MUM7 142 aa18.69■□□□□ 0.58
LDLR-206ENST00000557958 KIF2AO00139 706 aaPredicted RBP18.69■□□□□ 0.58
LDLR-206ENST00000557958 EYA4O95677 639 aa18.69■□□□□ 0.58
LDLR-206ENST00000557958 HERVK_113P62684 666 aa18.69■□□□□ 0.58
LDLR-206ENST00000557958 RNF207Q6ZRF8 634 aa18.69■□□□□ 0.58
LDLR-206ENST00000557958 CCAR2Q8N163 923 aaKnown RBP18.69■□□□□ 0.58
LDLR-206ENST00000557958 SMC1BQ8NDV3 1235 aa18.69■□□□□ 0.58
LDLR-206ENST00000557958 SYTL5Q8TDW5 730 aaPredicted RBP18.69■□□□□ 0.58
LDLR-206ENST00000557958 CCDC51Q96ER9 411 aa18.69■□□□□ 0.58
LDLR-206ENST00000557958 PANX2Q96RD6 677 aa18.69■□□□□ 0.58
LDLR-206ENST00000557958 BAG1Q99933 345 aaPredicted RBP18.69■□□□□ 0.58
LDLR-206ENST00000557958 NAA15Q9BXJ9 866 aaKnown RBP18.69■□□□□ 0.58
LDLR-206ENST00000557958 TEX13BQ9BXU2 312 aa18.69■□□□□ 0.58
LDLR-206ENST00000557958 ZNF214Q9UL59 606 aaPredicted RBP18.69■□□□□ 0.58
LDLR-206ENST00000557958 RBBP6Q7Z6E9 1792 aaKnown RBP18.69■□□□□ 0.58
LDLR-206ENST00000557958 CYP2C8P10632 490 aa18.69■□□□□ 0.58
LDLR-206ENST00000557958 UBXN1Q04323 297 aa18.69■□□□□ 0.58
LDLR-206ENST00000557958 GRM1Q13255 1194 aa18.69■□□□□ 0.58
LDLR-206ENST00000557958 TKFCQ3LXA3 575 aa18.69■□□□□ 0.58
LDLR-206ENST00000557958 HERC4Q5GLZ8 1057 aaPredicted RBP18.69■□□□□ 0.58
LDLR-206ENST00000557958 XRRA1Q6P2D8 792 aa18.69■□□□□ 0.58
LDLR-206ENST00000557958 IRF2BP1Q8IU81 584 aa18.69■□□□□ 0.58
LDLR-206ENST00000557958 ZFP91Q96JP5 570 aaPredicted RBP18.69■□□□□ 0.58
LDLR-206ENST00000557958 BTBD7Q9P203 1132 aa18.69■□□□□ 0.58
LDLR-206ENST00000557958 ABT1Q9ULW3 272 aaKnown RBP18.69■□□□□ 0.58
LDLR-206ENST00000557958 A0A1W2PQC6 194 aa18.68■□□□□ 0.58
LDLR-206ENST00000557958 FRMD3A2A2Y4 597 aa18.68■□□□□ 0.58
LDLR-206ENST00000557958 ATP2A1O14983 1001 aa18.68■□□□□ 0.58
LDLR-206ENST00000557958 DNM2P50570 870 aa18.68■□□□□ 0.58
LDLR-206ENST00000557958 RPS6P62753 249 aaKnown RBP18.68■□□□□ 0.58
LDLR-206ENST00000557958 CYP4A11Q02928 519 aa18.68■□□□□ 0.58
LDLR-206ENST00000557958 TC2NQ8N9U0 490 aa18.68■□□□□ 0.58
LDLR-206ENST00000557958 HPS3Q969F9 1004 aa18.68■□□□□ 0.58
LDLR-206ENST00000557958 MS4A4AQ96JQ5 239 aa18.68■□□□□ 0.58
LDLR-206ENST00000557958 CNOT6LQ96LI5 555 aaKnown RBP18.68■□□□□ 0.58
LDLR-206ENST00000557958 HSD17B14Q9BPX1 270 aa18.68■□□□□ 0.58
LDLR-206ENST00000557958 BTBD19C9JJ37 291 aa18.67■□□□□ 0.58
LDLR-206ENST00000557958 PDHXO00330 501 aa18.67■□□□□ 0.58
LDLR-206ENST00000557958 EML1O00423 815 aa18.67■□□□□ 0.58
LDLR-206ENST00000557958 PES1O00541 588 aaKnown RBP18.67■□□□□ 0.58
LDLR-206ENST00000557958 CHMP2AO43633 222 aa18.67■□□□□ 0.58
LDLR-206ENST00000557958 TBCAO75347 108 aaKnown RBP18.67■□□□□ 0.58
LDLR-206ENST00000557958 TUBB4AP04350 444 aa18.67■□□□□ 0.58
LDLR-206ENST00000557958 MTIF2P46199 727 aaKnown RBP18.67■□□□□ 0.58
LDLR-206ENST00000557958 EPHA7Q15375 998 aa18.67■□□□□ 0.58
LDLR-206ENST00000557958 LBX2Q6XYB7 198 aa18.67■□□□□ 0.58
LDLR-206ENST00000557958 C16orf45Q96MC5 204 aaPredicted RBP18.67■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms