RNA–Protein interactions for RNA: ENST00000523261.1

NKX3-1-202, Transcript of NK3 homeobox 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NKX3-1, Length 713 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-202ENST00000523261 SORBS3O60504 671 aa16.27■□□□□ 0.2
NKX3-1-202ENST00000523261 CELF3Q5SZQ8 465 aaKnown RBP16.27■□□□□ 0.2
NKX3-1-202ENST00000523261 KIAA2013Q8IYS2 634 aa16.27■□□□□ 0.2
NKX3-1-202ENST00000523261 CMTR2Q8IYT2 770 aaKnown RBP16.27■□□□□ 0.2
NKX3-1-202ENST00000523261 TMEM47Q9BQJ4 181 aa16.27■□□□□ 0.2
NKX3-1-202ENST00000523261 TUT1Q9H6E5 874 aaKnown RBP16.27■□□□□ 0.2
NKX3-1-202ENST00000523261 EHMT1Q9H9B1 1298 aa16.27■□□□□ 0.2
NKX3-1-202ENST00000523261 DLL3Q9NYJ7 618 aa16.27■□□□□ 0.2
NKX3-1-202ENST00000523261 GGPS1O95749 300 aa16.26■□□□□ 0.19
NKX3-1-202ENST00000523261 CHRNA1P02708 482 aa16.26■□□□□ 0.19
NKX3-1-202ENST00000523261 NR3C2P08235 984 aa16.26■□□□□ 0.19
NKX3-1-202ENST00000523261 GHRP10912 638 aa16.26■□□□□ 0.19
NKX3-1-202ENST00000523261 PDHBP11177 359 aa16.26■□□□□ 0.19
NKX3-1-202ENST00000523261 TOP1P11387 765 aaKnown RBP16.26■□□□□ 0.19
NKX3-1-202ENST00000523261 EIF2AK2P19525 551 aaKnown RBP16.26■□□□□ 0.19
NKX3-1-202ENST00000523261 CTDSPL2Q05D32 466 aa16.26■□□□□ 0.19
NKX3-1-202ENST00000523261 ZNF543Q08ER8 600 aa16.26■□□□□ 0.19
NKX3-1-202ENST00000523261 DUSP6Q16828 381 aa16.26■□□□□ 0.19
NKX3-1-202ENST00000523261 SIRT2Q8IXJ6 389 aa16.26■□□□□ 0.19
NKX3-1-202ENST00000523261 CRIPAKQ8N1N5 446 aa16.26■□□□□ 0.19
NKX3-1-202ENST00000523261 SETD4Q9NVD3 440 aa16.26■□□□□ 0.19
NKX3-1-202ENST00000523261 NR2E1Q9Y466 385 aa16.26■□□□□ 0.19
NKX3-1-202ENST00000523261 FSD2A1L4K1 749 aa16.25■□□□□ 0.19
NKX3-1-202ENST00000523261 RANBP6O60518 1105 aaKnown RBP16.25■□□□□ 0.19
NKX3-1-202ENST00000523261 LMNAP02545 664 aaKnown RBP16.25■□□□□ 0.19
NKX3-1-202ENST00000523261 ZFYP08048 801 aaPredicted RBP16.25■□□□□ 0.19
NKX3-1-202ENST00000523261 KCNC3Q14003 757 aa16.25■□□□□ 0.19
NKX3-1-202ENST00000523261 LPIN1Q14693 890 aa16.25■□□□□ 0.19
NKX3-1-202ENST00000523261 ANGPT1Q15389 498 aa16.25■□□□□ 0.19
NKX3-1-202ENST00000523261 ARHGEF16Q5VV41 709 aa16.25■□□□□ 0.19
NKX3-1-202ENST00000523261 CWF19L1Q69YN2 538 aaKnown RBP16.25■□□□□ 0.19
NKX3-1-202ENST00000523261 ANKRD54Q6NXT1 300 aa16.25■□□□□ 0.19
NKX3-1-202ENST00000523261 SYCE2Q6PIF2 218 aa16.25■□□□□ 0.19
NKX3-1-202ENST00000523261 TMEM184AQ6ZMB5 413 aa16.25■□□□□ 0.19
NKX3-1-202ENST00000523261 LINC01599Q8WXQ3 324 aa16.25■□□□□ 0.19
NKX3-1-202ENST00000523261 SEC62Q99442 399 aaKnown RBP16.25■□□□□ 0.19
NKX3-1-202ENST00000523261 CDCA3Q99618 268 aaPredicted RBP16.25■□□□□ 0.19
NKX3-1-202ENST00000523261 MFSD1Q9H3U5 465 aa16.25■□□□□ 0.19
NKX3-1-202ENST00000523261 C2CD4DB7Z1M9 353 aa16.24■□□□□ 0.19
NKX3-1-202ENST00000523261 LGALS2P05162 132 aa16.24■□□□□ 0.19
NKX3-1-202ENST00000523261 ARP10275 920 aa16.24■□□□□ 0.19
NKX3-1-202ENST00000523261 ADAM17P78536 824 aa16.24■□□□□ 0.19
NKX3-1-202ENST00000523261 SP2Q02086 613 aa16.24■□□□□ 0.19
NKX3-1-202ENST00000523261 CCDC105Q8IYK2 499 aa16.24■□□□□ 0.19
NKX3-1-202ENST00000523261 KCNG4Q8TDN1 519 aa16.24■□□□□ 0.19
NKX3-1-202ENST00000523261 MICAL1Q8TDZ2 1067 aa16.24■□□□□ 0.19
NKX3-1-202ENST00000523261 APOL5Q9BWW9 433 aa16.24■□□□□ 0.19
NKX3-1-202ENST00000523261 SEMA4AQ9H3S1 761 aa16.24■□□□□ 0.19
NKX3-1-202ENST00000523261 PXMP2Q9NR77 195 aa16.24■□□□□ 0.19
NKX3-1-202ENST00000523261 TSHZ2Q9NRE2 1034 aa16.24■□□□□ 0.19
NKX3-1-202ENST00000523261 ABCB11O95342 1321 aa16.23■□□□□ 0.19
NKX3-1-202ENST00000523261 USP24Q9UPU5 2620 aa16.23■□□□□ 0.19
NKX3-1-202ENST00000523261 PI15O43692 258 aa16.23■□□□□ 0.19
NKX3-1-202ENST00000523261 PPFIA3O75145 1194 aa16.23■□□□□ 0.19
NKX3-1-202ENST00000523261 HMMRO75330 724 aa16.23■□□□□ 0.19
NKX3-1-202ENST00000523261 SNHG28P0DPA3 235 aa16.23■□□□□ 0.19
NKX3-1-202ENST00000523261 GNAT1P11488 350 aa16.23■□□□□ 0.19
NKX3-1-202ENST00000523261 UBA1P22314 1058 aaKnown RBP16.23■□□□□ 0.19
NKX3-1-202ENST00000523261 TECP42680 631 aa16.23■□□□□ 0.19
NKX3-1-202ENST00000523261 PAN2Q504Q3 1202 aaKnown RBP16.23■□□□□ 0.19
NKX3-1-202ENST00000523261 KCNV1Q6PIU1 500 aa16.23■□□□□ 0.19
NKX3-1-202ENST00000523261 CDH22Q9UJ99 828 aa16.23■□□□□ 0.19
NKX3-1-202ENST00000523261 SUPT16HQ9Y5B9 1047 aaKnown RBP16.23■□□□□ 0.19
NKX3-1-202ENST00000523261 ATRXP46100 2492 aa16.23■□□□□ 0.19
NKX3-1-202ENST00000523261 FOXP2O15409 715 aa16.22■□□□□ 0.19
NKX3-1-202ENST00000523261 ORC4O43929 436 aa16.22■□□□□ 0.19
NKX3-1-202ENST00000523261 AOC1P19801 751 aa16.22■□□□□ 0.19
NKX3-1-202ENST00000523261 ERVFC1P60507 584 aa16.22■□□□□ 0.19
NKX3-1-202ENST00000523261 UBE3AQ05086 875 aa16.22■□□□□ 0.19
NKX3-1-202ENST00000523261 MGAT3Q09327 533 aa16.22■□□□□ 0.19
NKX3-1-202ENST00000523261 MCF2L2Q86YR7 1114 aa16.22■□□□□ 0.19
NKX3-1-202ENST00000523261 FLCNQ8NFG4 579 aa16.22■□□□□ 0.19
NKX3-1-202ENST00000523261 LMBR1Q8WVP7 490 aa16.22■□□□□ 0.19
NKX3-1-202ENST00000523261 CPVLQ9H3G5 476 aa16.22■□□□□ 0.19
NKX3-1-202ENST00000523261 ECHDC1Q9NTX5 307 aa16.22■□□□□ 0.19
NKX3-1-202ENST00000523261 ASGR2P07307 311 aa16.21■□□□□ 0.19
NKX3-1-202ENST00000523261 SRGAP2BP0DMP2 458 aa16.21■□□□□ 0.19
NKX3-1-202ENST00000523261 FBXO47Q5MNV8 452 aa16.21■□□□□ 0.19
NKX3-1-202ENST00000523261 RTN4RL1Q86UN2 441 aaPredicted RBP16.21■□□□□ 0.19
NKX3-1-202ENST00000523261 NPAS4Q8IUM7 802 aa16.21■□□□□ 0.19
NKX3-1-202ENST00000523261 DTWD2Q8NBA8 298 aa16.21■□□□□ 0.19
NKX3-1-202ENST00000523261 RASGRP4Q8TDF6 673 aa16.21■□□□□ 0.19
NKX3-1-202ENST00000523261 POMKQ9H5K3 350 aa16.21■□□□□ 0.19
NKX3-1-202ENST00000523261 BCAS3Q9H6U6 928 aa16.21■□□□□ 0.19
NKX3-1-202ENST00000523261 ANAPC4Q9UJX5 808 aa16.21■□□□□ 0.19
NKX3-1-202ENST00000523261 CCDC171Q6TFL3 1326 aa16.2■□□□□ 0.18
NKX3-1-202ENST00000523261 FSCN2O14926 492 aa16.2■□□□□ 0.18
NKX3-1-202ENST00000523261 FGRP09769 529 aa16.2■□□□□ 0.18
NKX3-1-202ENST00000523261 TGFB3P10600 412 aa16.2■□□□□ 0.18
NKX3-1-202ENST00000523261 HSPD1P10809 573 aaKnown RBP16.2■□□□□ 0.18
NKX3-1-202ENST00000523261 MYCLP12524 364 aaPredicted RBP16.2■□□□□ 0.18
NKX3-1-202ENST00000523261 NPR3P17342 541 aa16.2■□□□□ 0.18
NKX3-1-202ENST00000523261 HOXB8P17481 243 aaPredicted RBP16.2■□□□□ 0.18
NKX3-1-202ENST00000523261 GATMP50440 423 aa16.2■□□□□ 0.18
NKX3-1-202ENST00000523261 ARHGAP4P98171 946 aa16.2■□□□□ 0.18
NKX3-1-202ENST00000523261 CDC37Q16543 378 aaPredicted RBP16.2■□□□□ 0.18
NKX3-1-202ENST00000523261 RUFY4Q6ZNE9 571 aa16.2■□□□□ 0.18
NKX3-1-202ENST00000523261 GPKOWQ92917 476 aaPredicted RBP eCLIP16.2■□□□□ 0.18
NKX3-1-202ENST00000523261 PDCD2LQ9BRP1 358 aa16.2■□□□□ 0.18
NKX3-1-202ENST00000523261 USP26Q9BXU7 913 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms