RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 FBF1Q8TES7 1133 aa7.9□□□□□ -1.14
LIMCH1-207ENST00000508466 LRRC15Q8TF66 581 aa7.9□□□□□ -1.14
LIMCH1-207ENST00000508466 TAF4BQ92750 862 aa7.9□□□□□ -1.14
LIMCH1-207ENST00000508466 CYTH2Q99418 400 aa7.9□□□□□ -1.14
LIMCH1-207ENST00000508466 MAF1Q9H063 256 aa7.9□□□□□ -1.14
LIMCH1-207ENST00000508466 ADAM7Q9H2U9 754 aa7.9□□□□□ -1.14
LIMCH1-207ENST00000508466 ZBTB3Q9H5J0 574 aa7.9□□□□□ -1.14
LIMCH1-207ENST00000508466 PLCB1Q9NQ66 1216 aa7.9□□□□□ -1.14
LIMCH1-207ENST00000508466 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.9□□□□□ -1.14
LIMCH1-207ENST00000508466 CEP72Q9P209 647 aa7.9□□□□□ -1.14
LIMCH1-207ENST00000508466 BCS1LQ9Y276 419 aa7.9□□□□□ -1.14
LIMCH1-207ENST00000508466 ATF5Q9Y2D1 282 aaPredicted RBP7.9□□□□□ -1.14
LIMCH1-207ENST00000508466 CEP170BQ9Y4F5 1589 aaPredicted RBP7.9□□□□□ -1.14
LIMCH1-207ENST00000508466 RFX7Q2KHR2 1363 aa7.9□□□□□ -1.14
LIMCH1-207ENST00000508466 KIF1BO60333 1816 aa7.9□□□□□ -1.14
LIMCH1-207ENST00000508466 PTPRMP28827 1452 aa7.9□□□□□ -1.14
LIMCH1-207ENST00000508466 RBM47A0AV96 593 aaKnown RBP7.9□□□□□ -1.14
LIMCH1-207ENST00000508466 SPDYE16A6NNV3 312 aaPredicted RBP7.9□□□□□ -1.14
LIMCH1-207ENST00000508466 A6NNZ2 444 aa7.9□□□□□ -1.14
LIMCH1-207ENST00000508466 OR6B1O95007 311 aa7.9□□□□□ -1.14
LIMCH1-207ENST00000508466 ACSL3O95573 720 aa7.9□□□□□ -1.14
LIMCH1-207ENST00000508466 PAX3P23760 479 aa7.9□□□□□ -1.14
LIMCH1-207ENST00000508466 PEX5P50542 639 aa7.9□□□□□ -1.14
LIMCH1-207ENST00000508466 MGAT5Q09328 741 aa7.9□□□□□ -1.14
LIMCH1-207ENST00000508466 SGSM1Q2NKQ1 1148 aa7.9□□□□□ -1.14
LIMCH1-207ENST00000508466 TUBB8Q3ZCM7 444 aa7.9□□□□□ -1.14
LIMCH1-207ENST00000508466 KHDC1Q4VXA5 237 aaKnown RBP7.9□□□□□ -1.14
LIMCH1-207ENST00000508466 CRELD2Q6UXH1 353 aaPredicted RBP7.9□□□□□ -1.14
LIMCH1-207ENST00000508466 RUFY4Q6ZNE9 571 aa7.9□□□□□ -1.14
LIMCH1-207ENST00000508466 DNAJC9Q8WXX5 260 aa7.9□□□□□ -1.14
LIMCH1-207ENST00000508466 CNKSR1Q969H4 720 aa7.9□□□□□ -1.14
LIMCH1-207ENST00000508466 CDK5RAP3Q96JB5 506 aa7.9□□□□□ -1.14
LIMCH1-207ENST00000508466 DUSP9Q99956 384 aaKnown RBP7.9□□□□□ -1.14
LIMCH1-207ENST00000508466 USP20Q9Y2K6 914 aa7.9□□□□□ -1.14
LIMCH1-207ENST00000508466 SH3TC1Q8TE82 1336 aa7.9□□□□□ -1.15
LIMCH1-207ENST00000508466 A0A087X0T9 212 aa7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 CCDC160A6NGH7 325 aa7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 F8VZ95 297 aa7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 FAM228BP0C875 321 aa7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 NEK3P51956 506 aa7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 POLR2FP61218 127 aaKnown RBP7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 KCNMA1Q12791 1236 aa7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 RAPGEF1Q13905 1077 aa7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 RBM26Q5T8P6 1007 aaKnown RBP7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 CAPN12Q6ZSI9 719 aa7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 ANKRD13DQ6ZTN6 518 aa7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 ATG9AQ7Z3C6 839 aa7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 STAG2Q8N3U4 1231 aa7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 ABTB2Q8N961 1025 aa7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 JDP2Q8WYK2 163 aa7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 ARHGEF2Q92974 986 aaKnown RBP7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 RNF25Q96BH1 459 aaPredicted RBP7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 GBP5Q96PP8 586 aa7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 ARMT1Q9H993 441 aa7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 SLTMQ9NWH9 1034 aaKnown RBP eCLIP7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 ASAP1Q9ULH1 1129 aa7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 HEMK1Q9Y5R4 338 aaPredicted RBP7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 NEURL4Q96JN8 1562 aa7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 GFPT2O94808 682 aa7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 HNRNPCP07910 306 aaKnown RBP eCLIP7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 FAM200BP0CF97 657 aa7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 SRGNP10124 158 aa7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 GYS1P13807 737 aa7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 DNM2P50570 870 aa7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 ZNF658Q5TYW1 1059 aaPredicted RBP7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 CEP128Q6ZU80 1094 aa7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 USP38Q8NB14 1042 aa7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 WHAMMQ8TF30 809 aa7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 ATXN2LQ8WWM7 1075 aaKnown RBP7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 ERP27Q96DN0 273 aa7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 RBM17Q96I25 401 aaKnown RBP7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 POP1Q99575 1024 aaKnown RBP7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 ATP7AQ04656 1500 aa7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 USP32Q8NFA0 1604 aa7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 ZC3H13Q5T200 1668 aaKnown RBP7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 WDR91A4D1P6 747 aa7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 C5orf60A6NFR6 353 aa7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 FAM196BA6NMK8 535 aa7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 H7C1D1 291 aa7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 SNX3O60493 162 aa7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 KRT36O76013 467 aa7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 MBD4O95243 580 aa7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 ACTN1P12814 892 aa7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 PDE4DQ08499 809 aa7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 RPS6KA1Q15418 735 aa7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 EXOC3L4Q17RC7 722 aa7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 VWA3BQ502W6 1294 aa7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 TTC38Q5R3I4 469 aa7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 TMC3Q7Z5M5 1100 aa7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 SH3RF1Q7Z6J0 888 aa7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 PIGWQ7Z7B1 504 aa7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 LCA5Q86VQ0 697 aa7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 PURBQ96QR8 312 aaKnown RBP7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 SUDS3Q9H7L9 328 aaPredicted RBP7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 SLCO1B3Q9NPD5 702 aa7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 CLIC5Q9NZA1 410 aa7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 TSKSQ9UJT2 592 aa7.89□□□□□ -1.15
LIMCH1-207ENST00000508466 EDC4Q6P2E9 1401 aaKnown RBP7.88□□□□□ -1.15
LIMCH1-207ENST00000508466 NMT2O60551 498 aa7.88□□□□□ -1.15
LIMCH1-207ENST00000508466 DDX58O95786 925 aaKnown RBP7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms