RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 N4BP1O75113 896 aaKnown RBP10.04□□□□□ -0.8
LIMCH1-202ENST00000381753 SCG2P13521 617 aa10.04□□□□□ -0.8
LIMCH1-202ENST00000381753 PPARGP37231 505 aaPredicted RBP10.04□□□□□ -0.8
LIMCH1-202ENST00000381753 SCARA5Q6ZMJ2 495 aa10.04□□□□□ -0.8
LIMCH1-202ENST00000381753 DCP1BQ8IZD4 617 aaKnown RBP10.04□□□□□ -0.8
LIMCH1-202ENST00000381753 GMEB2Q9UKD1 530 aa10.04□□□□□ -0.8
LIMCH1-202ENST00000381753 UTYO14607 1347 aa10.04□□□□□ -0.8
LIMCH1-202ENST00000381753 APOEP02649 317 aa10.04□□□□□ -0.8
LIMCH1-202ENST00000381753 TYRO3Q06418 890 aa10.04□□□□□ -0.8
LIMCH1-202ENST00000381753 BAATQ14032 418 aaPredicted RBP10.04□□□□□ -0.8
LIMCH1-202ENST00000381753 PPP1R7Q15435 360 aa10.04□□□□□ -0.8
LIMCH1-202ENST00000381753 ZNF827Q17R98 1081 aa10.04□□□□□ -0.8
LIMCH1-202ENST00000381753 DENND2CQ68D51 928 aa10.04□□□□□ -0.8
LIMCH1-202ENST00000381753 IL31Q6EBC2 164 aa10.04□□□□□ -0.8
LIMCH1-202ENST00000381753 CYFIP1Q7L576 1253 aa10.04□□□□□ -0.8
LIMCH1-202ENST00000381753 AKT1S1Q96B36 256 aa10.04□□□□□ -0.8
LIMCH1-202ENST00000381753 GINM1Q9NU53 330 aa10.04□□□□□ -0.8
LIMCH1-202ENST00000381753 SLC9A2Q9UBY0 812 aa10.04□□□□□ -0.8
LIMCH1-202ENST00000381753 UTP18Q9Y5J1 556 aaKnown RBP eCLIP10.04□□□□□ -0.8
LIMCH1-202ENST00000381753 KDM6AO15550 1401 aaPredicted RBP10.04□□□□□ -0.8
LIMCH1-202ENST00000381753 ATP5JP18859 108 aa10.03□□□□□ -0.8
LIMCH1-202ENST00000381753 CYLC1P35663 651 aaPredicted RBP10.03□□□□□ -0.8
LIMCH1-202ENST00000381753 TRAPPC10P48553 1259 aa10.03□□□□□ -0.8
LIMCH1-202ENST00000381753 PTGISQ16647 500 aa10.03□□□□□ -0.8
LIMCH1-202ENST00000381753 BRAPQ7Z569 592 aa10.03□□□□□ -0.8
LIMCH1-202ENST00000381753 ANGPTL3Q9Y5C1 460 aa10.03□□□□□ -0.8
LIMCH1-202ENST00000381753 hCG_1984214I3L0E3 225 aa10.03□□□□□ -0.8
LIMCH1-202ENST00000381753 STXBP3O00186 592 aa10.03□□□□□ -0.8
LIMCH1-202ENST00000381753 EIF3JO75822 258 aaKnown RBP10.03□□□□□ -0.8
LIMCH1-202ENST00000381753 ALDH1A2O94788 518 aa10.03□□□□□ -0.8
LIMCH1-202ENST00000381753 EPHB3P54753 998 aa10.03□□□□□ -0.8
LIMCH1-202ENST00000381753 IRX5P78411 483 aaPredicted RBP10.03□□□□□ -0.8
LIMCH1-202ENST00000381753 EIF2B5Q13144 721 aaKnown RBP10.03□□□□□ -0.8
LIMCH1-202ENST00000381753 UBE2SQ16763 222 aa10.03□□□□□ -0.8
LIMCH1-202ENST00000381753 SLFN12LQ6IEE8 588 aa10.03□□□□□ -0.8
LIMCH1-202ENST00000381753 OOSP2Q86WS3 158 aa10.03□□□□□ -0.8
LIMCH1-202ENST00000381753 LCORLQ8N3X6 602 aa10.03□□□□□ -0.8
LIMCH1-202ENST00000381753 ZNF713Q8N859 430 aaPredicted RBP10.03□□□□□ -0.8
LIMCH1-202ENST00000381753 ABCG4Q9H172 646 aa10.03□□□□□ -0.8
LIMCH1-202ENST00000381753 GABBR1Q9UBS5 961 aa10.03□□□□□ -0.8
LIMCH1-202ENST00000381753 PCDHB8Q9UN66 801 aa10.03□□□□□ -0.8
LIMCH1-202ENST00000381753 KCNJ14Q9UNX9 436 aa10.03□□□□□ -0.8
LIMCH1-202ENST00000381753 MRPS17Q9Y2R5 130 aaKnown RBP10.03□□□□□ -0.8
LIMCH1-202ENST00000381753 POTEB3A0JP26 581 aa10.03□□□□□ -0.8
LIMCH1-202ENST00000381753 STX17P56962 302 aa10.03□□□□□ -0.8
LIMCH1-202ENST00000381753 ITIH3Q06033 890 aa10.03□□□□□ -0.8
LIMCH1-202ENST00000381753 POTEBQ6S5H4 581 aa10.03□□□□□ -0.8
LIMCH1-202ENST00000381753 CCDC84Q86UT8 332 aaPredicted RBP10.03□□□□□ -0.8
LIMCH1-202ENST00000381753 ESYT1Q9BSJ8 1104 aa10.03□□□□□ -0.8
LIMCH1-202ENST00000381753 FAN1Q9Y2M0 1017 aa10.03□□□□□ -0.8
LIMCH1-202ENST00000381753 SRGNP10124 158 aa10.03□□□□□ -0.8
LIMCH1-202ENST00000381753 HSP90AA4PQ58FG1 418 aa10.03□□□□□ -0.8
LIMCH1-202ENST00000381753 EPHA10Q5JZY3 1008 aa10.03□□□□□ -0.8
LIMCH1-202ENST00000381753 HHIPL2Q6UWX4 724 aa10.03□□□□□ -0.8
LIMCH1-202ENST00000381753 APPL2Q8NEU8 664 aa10.03□□□□□ -0.8
LIMCH1-202ENST00000381753 DPF2Q92785 391 aa10.03□□□□□ -0.8
LIMCH1-202ENST00000381753 ZNF560Q96MR9 790 aa10.03□□□□□ -0.8
LIMCH1-202ENST00000381753 TLE6Q9H808 572 aa10.03□□□□□ -0.8
LIMCH1-202ENST00000381753 SLC25A13Q9UJS0 675 aa10.03□□□□□ -0.8
LIMCH1-202ENST00000381753 CARNS1A5YM72 827 aa10.02□□□□□ -0.8
LIMCH1-202ENST00000381753 CLDN3O15551 220 aa10.02□□□□□ -0.8
LIMCH1-202ENST00000381753 CAMTA2O94983 1202 aa10.02□□□□□ -0.8
LIMCH1-202ENST00000381753 SPATA17Q96L03 361 aa10.02□□□□□ -0.8
LIMCH1-202ENST00000381753 TJP2Q9UDY2 1190 aa10.02□□□□□ -0.8
LIMCH1-202ENST00000381753 MEI4A8MW99 385 aa10.02□□□□□ -0.81
LIMCH1-202ENST00000381753 MED7O43513 233 aa10.02□□□□□ -0.81
LIMCH1-202ENST00000381753 ZWINTO95229 277 aa10.02□□□□□ -0.81
LIMCH1-202ENST00000381753 HSPA4P34932 840 aa10.02□□□□□ -0.81
LIMCH1-202ENST00000381753 CFAP157Q5JU67 520 aa10.02□□□□□ -0.81
LIMCH1-202ENST00000381753 HAUS1Q96CS2 278 aa10.02□□□□□ -0.81
LIMCH1-202ENST00000381753 SPON2Q9BUD6 331 aa10.02□□□□□ -0.81
LIMCH1-202ENST00000381753 OLA1Q9NTK5 396 aaKnown RBP10.02□□□□□ -0.81
LIMCH1-202ENST00000381753 SLC38A7Q9NVC3 462 aa10.02□□□□□ -0.81
LIMCH1-202ENST00000381753 NCKAP1Q9Y2A7 1128 aa10.02□□□□□ -0.81
LIMCH1-202ENST00000381753 CPDO75976 1380 aa10.02□□□□□ -0.81
LIMCH1-202ENST00000381753 MAGEB2O15479 319 aa10.02□□□□□ -0.81
LIMCH1-202ENST00000381753 RNF8O76064 485 aa10.02□□□□□ -0.81
LIMCH1-202ENST00000381753 UBXN1Q04323 297 aa10.02□□□□□ -0.81
LIMCH1-202ENST00000381753 PTPN12Q05209 780 aaKnown RBP10.02□□□□□ -0.81
LIMCH1-202ENST00000381753 VWA3BQ502W6 1294 aa10.02□□□□□ -0.81
LIMCH1-202ENST00000381753 CDC42EP5Q6NZY7 148 aa10.02□□□□□ -0.81
LIMCH1-202ENST00000381753 HDDC3Q8N4P3 179 aa10.02□□□□□ -0.81
LIMCH1-202ENST00000381753 NOC4LQ9BVI4 516 aaKnown RBP10.02□□□□□ -0.81
LIMCH1-202ENST00000381753 JADE2Q9NQC1 790 aa10.02□□□□□ -0.81
LIMCH1-202ENST00000381753 CDK12Q9NYV4 1490 aaPredicted RBP10.02□□□□□ -0.81
LIMCH1-202ENST00000381753 PGK2P07205 417 aa10.02□□□□□ -0.81
LIMCH1-202ENST00000381753 NASPP49321 788 aaPredicted RBP10.02□□□□□ -0.81
LIMCH1-202ENST00000381753 PPATQ06203 517 aa10.02□□□□□ -0.81
LIMCH1-202ENST00000381753 PLD1Q13393 1074 aa10.02□□□□□ -0.81
LIMCH1-202ENST00000381753 UAP1Q16222 522 aaPredicted RBP10.02□□□□□ -0.81
LIMCH1-202ENST00000381753 ANO4Q32M45 955 aa10.02□□□□□ -0.81
LIMCH1-202ENST00000381753 KRT40Q6A162 431 aa10.02□□□□□ -0.81
LIMCH1-202ENST00000381753 PBXIP1Q96AQ6 731 aa10.02□□□□□ -0.81
LIMCH1-202ENST00000381753 IFT122Q9HBG6 1241 aa10.02□□□□□ -0.81
LIMCH1-202ENST00000381753 NCOA5Q9HCD5 579 aaKnown RBP10.02□□□□□ -0.81
LIMCH1-202ENST00000381753 GCC2Q8IWJ2 1684 aa10.02□□□□□ -0.81
LIMCH1-202ENST00000381753 STRNO43815 780 aa10.02□□□□□ -0.81
LIMCH1-202ENST00000381753 CA4P22748 312 aa10.02□□□□□ -0.81
LIMCH1-202ENST00000381753 KIAA1755Q5JYT7 1200 aa10.02□□□□□ -0.81
LIMCH1-202ENST00000381753 DDX42Q86XP3 938 aaKnown RBP eCLIP10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 166.1 ms